├── dev_tools ├── GraphicInterface.R └── package_dev.R ├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS ├── R ├── EpiDynamics-package.R ├── MultiStrainPartialImmunity.R ├── PlotMods.R ├── SEIR.R ├── SEIR4AgeClasses.R ├── SEIRnStages.R ├── SIR.R ├── SIR2AgeClasses.R ├── SIR2TypesImports.R ├── SIRAdditiveNoise.R ├── SIRBirthDeath.R ├── SIRCarrierState.R ├── SIRDemogStoch.R ├── SIRInducedMortality.R ├── SIRInducedMortality2.R ├── SIRPartialImmunity.R ├── SIRScaledAdditiveNoise.R ├── SIRSinusoidalBirth.R ├── SIRSinusoidalForcing.R ├── SIRTauLeap.R ├── SIRTermTimeForcing.R ├── SIRVector.R ├── SIS.R ├── SIS2RiskGroups.R ├── SISDemogStoch.R ├── SISinusoidalTransmBrith.R └── SISnRiskGroups.R ├── README.md └── man ├── EpiDynamics-package.Rd ├── MultiStrainPartialImmunity.Rd ├── PlotMods.Rd ├── SEIR.Rd ├── SEIR4AgeClasses.Rd ├── SEIRnStages.Rd ├── SIR.Rd ├── SIR2TypesImports.Rd ├── SIRAdditiveNoise.Rd ├── SIRBirthDeath.Rd ├── SIRCarrierState.Rd ├── 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