├── .gitignore ├── LICENSE ├── Makefile ├── README.md ├── concordex ├── __init__.py ├── neighbors │ ├── __init__.py │ └── _neighborhood.py ├── tests │ └── test_label_utils.py ├── tools │ ├── __init__.py │ └── _concordex.py └── utils │ └── _labels.py ├── examples ├── concordex_py_pbmc_demo.ipynb ├── concordex_py_starmap_demo.ipynb └── data │ └── starmap_processed.h5ad ├── pyproject.toml ├── requirements.txt └── setup.cfg /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/README.md -------------------------------------------------------------------------------- /concordex/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/concordex/__init__.py -------------------------------------------------------------------------------- /concordex/neighbors/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/concordex/neighbors/__init__.py -------------------------------------------------------------------------------- /concordex/neighbors/_neighborhood.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/concordex/neighbors/_neighborhood.py -------------------------------------------------------------------------------- /concordex/tests/test_label_utils.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /concordex/tools/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/concordex/tools/__init__.py -------------------------------------------------------------------------------- /concordex/tools/_concordex.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/concordex/tools/_concordex.py -------------------------------------------------------------------------------- /concordex/utils/_labels.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/concordex/utils/_labels.py -------------------------------------------------------------------------------- /examples/concordex_py_pbmc_demo.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/examples/concordex_py_pbmc_demo.ipynb -------------------------------------------------------------------------------- /examples/concordex_py_starmap_demo.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/examples/concordex_py_starmap_demo.ipynb -------------------------------------------------------------------------------- /examples/data/starmap_processed.h5ad: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/examples/data/starmap_processed.h5ad -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/pyproject.toml -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pachterlab/concordex/HEAD/setup.cfg --------------------------------------------------------------------------------