├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ └── pkgdown.yaml ├── .gitignore ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── analytiskontodimas_2004.R ├── ashrafi1_2018.R ├── ashrafi2_2018.R ├── ashrafi3_2018.R ├── ashrafi4_2018.R ├── ashrafi5_2018.R ├── atkin_2005.R ├── beta_2012.R ├── betatypesimplified_2008.R ├── boatman_2017.R ├── briere1.R ├── briere1simplified_1999.R ├── briere2_1999.R ├── briere2simplified_1999.R ├── briereextended_2021.R ├── briereextendedsimplified_2021.R ├── calc_params.R ├── data.R ├── delong_2017.R ├── deutsch_2008.R ├── eubank_1973.R ├── flextpc_2024.R ├── flinn_1991.R ├── gaussian_1987.R ├── gaussianmodified_2006.R ├── get_breadth.R ├── get_ctmax.R ├── get_ctmin.R ├── get_e.R ├── get_eh.R ├── get_lower_lims.R ├── get_model_names.R ├── get_q10.R ├── get_rmax.R ├── get_skewness.R ├── get_start_vals.R ├── get_thermalsafetymargin.R ├── get_thermaltolerance.R ├── get_topt.R ├── get_tpc_as_formula.R ├── get_upper_lims.R ├── hinshelwood_1947.R ├── janisch1_1925.R ├── janisch2_1925.R ├── joehnk_2008.R ├── johnsonlewin_1946.R ├── kamykowski_1985.R ├── lactin2_1995.R ├── lobry_1991.R ├── mitchell_2009.R ├── oneill_1972.R ├── pawar_2018.R ├── quadratic_2008.R ├── quickfit_tpc.R ├── quickfit_tpc_multi.R ├── ratkowsky_1983.R ├── rezende_2019.R ├── rosso_1993.R ├── sharpeschoolfull_1981.R ├── sharpeschoolhigh_1981.R ├── sharpeschoollow_1981.R ├── spain_1982.R ├── stinner_1974.R ├── taylorsexton_1972.R ├── thomas_2012.R ├── thomas_2017.R ├── tomlinsonphillips_2015.R ├── warrendreyer_2006.R └── weibull_1995.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── cran-comments.md ├── data ├── bacteria_tpc.rda └── chlorella_tpc.rda ├── hex_sticker.R ├── man ├── analytiskontodimas_2004.Rd ├── ashrafi1_2018.Rd ├── ashrafi2_2018.Rd ├── ashrafi3_2018.Rd ├── ashrafi4_2018.Rd ├── ashrafi5_2018.Rd ├── atkin_2005.Rd ├── bacteria_tpc.Rd ├── beta_2012.Rd ├── betatypesimplified_2008.Rd ├── boatman_2017.Rd ├── briere1_1999.Rd ├── briere1simplified_1999.Rd ├── briere2_1999.Rd ├── briere2simplified_1999.Rd ├── briereextended_2021.Rd ├── briereextendedsimplified_2021.Rd ├── calc_params.Rd ├── chlorella_tpc.Rd ├── delong_2017.Rd ├── deutsch_2008.Rd ├── eubank_1973.Rd ├── figures │ ├── logo.png │ ├── rTPC_hex_sticker.png │ ├── rTPC_pipeline.png │ └── rTPC_pipeline_extensions.png ├── flextpc_2024.Rd ├── flinn_1991.Rd ├── gaussian_1987.Rd ├── gaussianmodified_2006.Rd ├── get_breadth.Rd ├── get_ctmax.Rd ├── get_ctmin.Rd ├── get_e.Rd ├── get_eh.Rd ├── get_lower_lims.Rd ├── get_model_names.Rd ├── get_q10.Rd ├── get_rmax.Rd ├── get_skewness.Rd ├── get_start_vals.Rd ├── get_thermalsafetymargin.Rd ├── get_thermaltolerance.Rd ├── get_topt.Rd ├── get_tpc_as_formula.Rd ├── get_upper_lims.Rd ├── hinshelwood_1947.Rd ├── janisch1_1925.Rd ├── janisch2_1925.Rd ├── joehnk_2008.Rd ├── johnsonlewin_1946.Rd ├── kamykowski_1985.Rd ├── lactin2_1995.Rd ├── lobry_1991.Rd ├── mitchell_2009.Rd ├── oneill_1972.Rd ├── pawar_2018.Rd ├── quadratic_2008.Rd ├── quickfit_tpc.Rd ├── quickfit_tpc_multi.Rd ├── ratkowsky_1983.Rd ├── rezende_2019.Rd ├── rosso_1993.Rd ├── sharpeschoolfull_1981.Rd ├── sharpeschoolhigh_1981.Rd ├── sharpeschoollow_1981.Rd ├── spain_1982.Rd ├── stinner_1974.Rd ├── taylorsexton_1972.Rd ├── thomas_2012.Rd ├── thomas_2017.Rd ├── tomlinsonphillips_2015.Rd ├── warrendreyer_2006.Rd └── weibull_1995.Rd ├── pkgdown ├── extra.css └── favicon │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ └── favicon.ico ├── rTPC.Rproj ├── test.R ├── tests ├── testthat.R └── testthat │ ├── test-analytiskontodimas_2004.R │ ├── test-ashrafi1_2018.R │ ├── test-ashrafi2_2018.R │ ├── test-ashrafi3_2018.R │ ├── test-ashrafi4_2018.R │ ├── test-ashrafi5_2018.R │ ├── test-atkin_2005.R │ ├── test-beta_2012.R │ ├── test-betatypesimplified_2008.R │ ├── test-boatman_2017.R │ ├── test-briere1.R │ ├── test-briere1simplified_1999.R │ ├── test-briere2_1999.R │ ├── test-briere2simplified_1999.R │ ├── test-briereextended_2021.R │ ├── test-briereextendedsimplified_2021.R │ ├── test-delong_2017.R │ ├── test-eubank_1973.R │ ├── test-flextpc_2024.R │ ├── test-flinn_1991.R │ ├── test-gaussian_1987.R │ ├── test-gaussianmodified_2006.R │ ├── test-hinshelwood_1947.R │ ├── test-janisch1_1925.R │ ├── test-janisch2_1925.R │ ├── test-joehnk_2008.R │ ├── test-johnsonlewin_1946.R │ ├── test-kamykowski_1985.R │ ├── test-lactin2_1995.R │ ├── test-mitchell_2009.R │ ├── test-oneill_1972.R │ ├── test-pawar_2018.R │ ├── test-quadratic_2008.R │ ├── test-ratkowsky_1983.R │ ├── test-rezende_2019.R │ ├── test-rosso_1993.R │ ├── test-sharpeschoolfull_1981.R │ ├── test-sharpeschoolhigh_1981.R │ ├── test-sharpeschoollow_1981.R │ ├── test-spain_1982.R │ ├── test-startingvalues.R │ ├── test-stinner_1974.R │ ├── test-taylorsexton_1972.R │ ├── test-thomas_2012.R │ ├── test-thomas_2017.R │ ├── test-tomlinsonphillips_2015.R │ ├── test-warrendreyer_2006.R │ └── test-weibull_1995.R └── vignettes ├── .gitignore ├── adding_models.Rmd ├── bootstrapping_many_curves.Rmd ├── bootstrapping_models.Rmd ├── fit_many_curves.Rmd ├── fit_many_models.Rmd ├── model_averaging_selection.Rmd ├── model_weighting.Rmd ├── quickfit_parallel.Rmd ├── rTPC.Rmd └── weighted_bootstrapping.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/workflows/R-CMD-check.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/.github/workflows/R-CMD-check.yaml -------------------------------------------------------------------------------- /.github/workflows/pkgdown.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/.github/workflows/pkgdown.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/LICENSE.md -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/NAMESPACE -------------------------------------------------------------------------------- /NEWS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/NEWS.md -------------------------------------------------------------------------------- /R/analytiskontodimas_2004.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/analytiskontodimas_2004.R -------------------------------------------------------------------------------- /R/ashrafi1_2018.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/ashrafi1_2018.R -------------------------------------------------------------------------------- /R/ashrafi2_2018.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/ashrafi2_2018.R -------------------------------------------------------------------------------- /R/ashrafi3_2018.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/ashrafi3_2018.R -------------------------------------------------------------------------------- /R/ashrafi4_2018.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/ashrafi4_2018.R -------------------------------------------------------------------------------- /R/ashrafi5_2018.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/ashrafi5_2018.R -------------------------------------------------------------------------------- /R/atkin_2005.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/atkin_2005.R -------------------------------------------------------------------------------- /R/beta_2012.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/beta_2012.R -------------------------------------------------------------------------------- /R/betatypesimplified_2008.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/betatypesimplified_2008.R -------------------------------------------------------------------------------- /R/boatman_2017.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/boatman_2017.R -------------------------------------------------------------------------------- /R/briere1.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/briere1.R -------------------------------------------------------------------------------- /R/briere1simplified_1999.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/briere1simplified_1999.R -------------------------------------------------------------------------------- /R/briere2_1999.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/briere2_1999.R -------------------------------------------------------------------------------- /R/briere2simplified_1999.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/briere2simplified_1999.R -------------------------------------------------------------------------------- /R/briereextended_2021.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/briereextended_2021.R -------------------------------------------------------------------------------- /R/briereextendedsimplified_2021.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/briereextendedsimplified_2021.R -------------------------------------------------------------------------------- /R/calc_params.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/calc_params.R -------------------------------------------------------------------------------- /R/data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/data.R -------------------------------------------------------------------------------- /R/delong_2017.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/delong_2017.R -------------------------------------------------------------------------------- /R/deutsch_2008.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/deutsch_2008.R -------------------------------------------------------------------------------- /R/eubank_1973.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/eubank_1973.R -------------------------------------------------------------------------------- /R/flextpc_2024.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/flextpc_2024.R -------------------------------------------------------------------------------- /R/flinn_1991.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/flinn_1991.R -------------------------------------------------------------------------------- /R/gaussian_1987.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/gaussian_1987.R -------------------------------------------------------------------------------- /R/gaussianmodified_2006.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/gaussianmodified_2006.R -------------------------------------------------------------------------------- /R/get_breadth.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_breadth.R -------------------------------------------------------------------------------- /R/get_ctmax.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_ctmax.R -------------------------------------------------------------------------------- /R/get_ctmin.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_ctmin.R -------------------------------------------------------------------------------- /R/get_e.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_e.R -------------------------------------------------------------------------------- /R/get_eh.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_eh.R -------------------------------------------------------------------------------- /R/get_lower_lims.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_lower_lims.R -------------------------------------------------------------------------------- /R/get_model_names.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_model_names.R -------------------------------------------------------------------------------- /R/get_q10.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_q10.R -------------------------------------------------------------------------------- /R/get_rmax.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_rmax.R -------------------------------------------------------------------------------- /R/get_skewness.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_skewness.R -------------------------------------------------------------------------------- /R/get_start_vals.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_start_vals.R -------------------------------------------------------------------------------- /R/get_thermalsafetymargin.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_thermalsafetymargin.R -------------------------------------------------------------------------------- /R/get_thermaltolerance.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_thermaltolerance.R -------------------------------------------------------------------------------- /R/get_topt.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_topt.R -------------------------------------------------------------------------------- /R/get_tpc_as_formula.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_tpc_as_formula.R -------------------------------------------------------------------------------- /R/get_upper_lims.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/get_upper_lims.R -------------------------------------------------------------------------------- /R/hinshelwood_1947.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/hinshelwood_1947.R -------------------------------------------------------------------------------- /R/janisch1_1925.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/janisch1_1925.R -------------------------------------------------------------------------------- /R/janisch2_1925.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/janisch2_1925.R -------------------------------------------------------------------------------- /R/joehnk_2008.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/joehnk_2008.R -------------------------------------------------------------------------------- /R/johnsonlewin_1946.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/johnsonlewin_1946.R -------------------------------------------------------------------------------- /R/kamykowski_1985.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/kamykowski_1985.R -------------------------------------------------------------------------------- /R/lactin2_1995.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/lactin2_1995.R -------------------------------------------------------------------------------- /R/lobry_1991.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/lobry_1991.R -------------------------------------------------------------------------------- /R/mitchell_2009.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/mitchell_2009.R -------------------------------------------------------------------------------- /R/oneill_1972.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/oneill_1972.R -------------------------------------------------------------------------------- /R/pawar_2018.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/pawar_2018.R -------------------------------------------------------------------------------- /R/quadratic_2008.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/quadratic_2008.R -------------------------------------------------------------------------------- /R/quickfit_tpc.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/quickfit_tpc.R -------------------------------------------------------------------------------- /R/quickfit_tpc_multi.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/quickfit_tpc_multi.R -------------------------------------------------------------------------------- /R/ratkowsky_1983.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/ratkowsky_1983.R -------------------------------------------------------------------------------- /R/rezende_2019.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/rezende_2019.R -------------------------------------------------------------------------------- /R/rosso_1993.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/rosso_1993.R -------------------------------------------------------------------------------- /R/sharpeschoolfull_1981.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/sharpeschoolfull_1981.R -------------------------------------------------------------------------------- /R/sharpeschoolhigh_1981.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/sharpeschoolhigh_1981.R -------------------------------------------------------------------------------- /R/sharpeschoollow_1981.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/sharpeschoollow_1981.R -------------------------------------------------------------------------------- /R/spain_1982.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/spain_1982.R -------------------------------------------------------------------------------- /R/stinner_1974.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/stinner_1974.R -------------------------------------------------------------------------------- /R/taylorsexton_1972.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/taylorsexton_1972.R -------------------------------------------------------------------------------- /R/thomas_2012.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/thomas_2012.R -------------------------------------------------------------------------------- /R/thomas_2017.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/thomas_2017.R -------------------------------------------------------------------------------- /R/tomlinsonphillips_2015.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/tomlinsonphillips_2015.R -------------------------------------------------------------------------------- /R/warrendreyer_2006.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/warrendreyer_2006.R -------------------------------------------------------------------------------- /R/weibull_1995.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/R/weibull_1995.R -------------------------------------------------------------------------------- /README.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/README.Rmd -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/README.md -------------------------------------------------------------------------------- /_pkgdown.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/_pkgdown.yml -------------------------------------------------------------------------------- /cran-comments.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/cran-comments.md -------------------------------------------------------------------------------- /data/bacteria_tpc.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/data/bacteria_tpc.rda -------------------------------------------------------------------------------- /data/chlorella_tpc.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/data/chlorella_tpc.rda -------------------------------------------------------------------------------- /hex_sticker.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/hex_sticker.R -------------------------------------------------------------------------------- /man/analytiskontodimas_2004.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/analytiskontodimas_2004.Rd -------------------------------------------------------------------------------- /man/ashrafi1_2018.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/ashrafi1_2018.Rd -------------------------------------------------------------------------------- /man/ashrafi2_2018.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/ashrafi2_2018.Rd -------------------------------------------------------------------------------- /man/ashrafi3_2018.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/ashrafi3_2018.Rd -------------------------------------------------------------------------------- /man/ashrafi4_2018.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/ashrafi4_2018.Rd -------------------------------------------------------------------------------- /man/ashrafi5_2018.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/ashrafi5_2018.Rd -------------------------------------------------------------------------------- /man/atkin_2005.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/atkin_2005.Rd -------------------------------------------------------------------------------- /man/bacteria_tpc.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/bacteria_tpc.Rd -------------------------------------------------------------------------------- /man/beta_2012.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/beta_2012.Rd -------------------------------------------------------------------------------- /man/betatypesimplified_2008.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/betatypesimplified_2008.Rd -------------------------------------------------------------------------------- /man/boatman_2017.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/boatman_2017.Rd -------------------------------------------------------------------------------- /man/briere1_1999.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/briere1_1999.Rd -------------------------------------------------------------------------------- /man/briere1simplified_1999.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/briere1simplified_1999.Rd -------------------------------------------------------------------------------- /man/briere2_1999.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/briere2_1999.Rd -------------------------------------------------------------------------------- /man/briere2simplified_1999.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/briere2simplified_1999.Rd -------------------------------------------------------------------------------- /man/briereextended_2021.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/briereextended_2021.Rd -------------------------------------------------------------------------------- /man/briereextendedsimplified_2021.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/briereextendedsimplified_2021.Rd -------------------------------------------------------------------------------- /man/calc_params.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/calc_params.Rd -------------------------------------------------------------------------------- /man/chlorella_tpc.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/chlorella_tpc.Rd -------------------------------------------------------------------------------- /man/delong_2017.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/delong_2017.Rd -------------------------------------------------------------------------------- /man/deutsch_2008.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/deutsch_2008.Rd -------------------------------------------------------------------------------- /man/eubank_1973.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/eubank_1973.Rd -------------------------------------------------------------------------------- /man/figures/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/figures/logo.png -------------------------------------------------------------------------------- /man/figures/rTPC_hex_sticker.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/figures/rTPC_hex_sticker.png -------------------------------------------------------------------------------- /man/figures/rTPC_pipeline.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/figures/rTPC_pipeline.png -------------------------------------------------------------------------------- /man/figures/rTPC_pipeline_extensions.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/figures/rTPC_pipeline_extensions.png -------------------------------------------------------------------------------- /man/flextpc_2024.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/flextpc_2024.Rd -------------------------------------------------------------------------------- /man/flinn_1991.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/flinn_1991.Rd -------------------------------------------------------------------------------- /man/gaussian_1987.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/gaussian_1987.Rd -------------------------------------------------------------------------------- /man/gaussianmodified_2006.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/gaussianmodified_2006.Rd -------------------------------------------------------------------------------- /man/get_breadth.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_breadth.Rd -------------------------------------------------------------------------------- /man/get_ctmax.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_ctmax.Rd -------------------------------------------------------------------------------- /man/get_ctmin.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_ctmin.Rd -------------------------------------------------------------------------------- /man/get_e.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_e.Rd -------------------------------------------------------------------------------- /man/get_eh.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_eh.Rd -------------------------------------------------------------------------------- /man/get_lower_lims.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_lower_lims.Rd -------------------------------------------------------------------------------- /man/get_model_names.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_model_names.Rd -------------------------------------------------------------------------------- /man/get_q10.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_q10.Rd -------------------------------------------------------------------------------- /man/get_rmax.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_rmax.Rd -------------------------------------------------------------------------------- /man/get_skewness.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_skewness.Rd -------------------------------------------------------------------------------- /man/get_start_vals.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_start_vals.Rd -------------------------------------------------------------------------------- /man/get_thermalsafetymargin.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_thermalsafetymargin.Rd -------------------------------------------------------------------------------- /man/get_thermaltolerance.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_thermaltolerance.Rd -------------------------------------------------------------------------------- /man/get_topt.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_topt.Rd -------------------------------------------------------------------------------- /man/get_tpc_as_formula.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_tpc_as_formula.Rd -------------------------------------------------------------------------------- /man/get_upper_lims.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/get_upper_lims.Rd -------------------------------------------------------------------------------- /man/hinshelwood_1947.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/hinshelwood_1947.Rd -------------------------------------------------------------------------------- /man/janisch1_1925.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/janisch1_1925.Rd -------------------------------------------------------------------------------- /man/janisch2_1925.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/janisch2_1925.Rd -------------------------------------------------------------------------------- /man/joehnk_2008.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/joehnk_2008.Rd -------------------------------------------------------------------------------- /man/johnsonlewin_1946.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/johnsonlewin_1946.Rd -------------------------------------------------------------------------------- /man/kamykowski_1985.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/kamykowski_1985.Rd -------------------------------------------------------------------------------- /man/lactin2_1995.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/lactin2_1995.Rd -------------------------------------------------------------------------------- /man/lobry_1991.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/lobry_1991.Rd -------------------------------------------------------------------------------- /man/mitchell_2009.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/mitchell_2009.Rd -------------------------------------------------------------------------------- /man/oneill_1972.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/oneill_1972.Rd -------------------------------------------------------------------------------- /man/pawar_2018.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/pawar_2018.Rd -------------------------------------------------------------------------------- /man/quadratic_2008.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/quadratic_2008.Rd -------------------------------------------------------------------------------- /man/quickfit_tpc.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/quickfit_tpc.Rd -------------------------------------------------------------------------------- /man/quickfit_tpc_multi.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/quickfit_tpc_multi.Rd -------------------------------------------------------------------------------- /man/ratkowsky_1983.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/ratkowsky_1983.Rd -------------------------------------------------------------------------------- /man/rezende_2019.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/rezende_2019.Rd -------------------------------------------------------------------------------- /man/rosso_1993.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/rosso_1993.Rd -------------------------------------------------------------------------------- /man/sharpeschoolfull_1981.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/sharpeschoolfull_1981.Rd -------------------------------------------------------------------------------- /man/sharpeschoolhigh_1981.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/sharpeschoolhigh_1981.Rd -------------------------------------------------------------------------------- /man/sharpeschoollow_1981.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/sharpeschoollow_1981.Rd -------------------------------------------------------------------------------- /man/spain_1982.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/spain_1982.Rd -------------------------------------------------------------------------------- /man/stinner_1974.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/stinner_1974.Rd -------------------------------------------------------------------------------- /man/taylorsexton_1972.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/taylorsexton_1972.Rd -------------------------------------------------------------------------------- /man/thomas_2012.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/thomas_2012.Rd -------------------------------------------------------------------------------- /man/thomas_2017.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/thomas_2017.Rd -------------------------------------------------------------------------------- /man/tomlinsonphillips_2015.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/tomlinsonphillips_2015.Rd -------------------------------------------------------------------------------- /man/warrendreyer_2006.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/warrendreyer_2006.Rd -------------------------------------------------------------------------------- /man/weibull_1995.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/man/weibull_1995.Rd -------------------------------------------------------------------------------- /pkgdown/extra.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/pkgdown/extra.css -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-120x120.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/pkgdown/favicon/apple-touch-icon-120x120.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-152x152.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/pkgdown/favicon/apple-touch-icon-152x152.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-180x180.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/pkgdown/favicon/apple-touch-icon-180x180.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-60x60.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/pkgdown/favicon/apple-touch-icon-60x60.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-76x76.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/pkgdown/favicon/apple-touch-icon-76x76.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/pkgdown/favicon/apple-touch-icon.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon-16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/pkgdown/favicon/favicon-16x16.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon-32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/pkgdown/favicon/favicon-32x32.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/pkgdown/favicon/favicon.ico -------------------------------------------------------------------------------- /rTPC.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/rTPC.Rproj -------------------------------------------------------------------------------- /test.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/test.R -------------------------------------------------------------------------------- /tests/testthat.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat.R -------------------------------------------------------------------------------- /tests/testthat/test-analytiskontodimas_2004.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-analytiskontodimas_2004.R -------------------------------------------------------------------------------- /tests/testthat/test-ashrafi1_2018.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-ashrafi1_2018.R -------------------------------------------------------------------------------- /tests/testthat/test-ashrafi2_2018.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-ashrafi2_2018.R -------------------------------------------------------------------------------- /tests/testthat/test-ashrafi3_2018.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-ashrafi3_2018.R -------------------------------------------------------------------------------- /tests/testthat/test-ashrafi4_2018.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-ashrafi4_2018.R -------------------------------------------------------------------------------- /tests/testthat/test-ashrafi5_2018.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-ashrafi5_2018.R -------------------------------------------------------------------------------- /tests/testthat/test-atkin_2005.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-atkin_2005.R -------------------------------------------------------------------------------- /tests/testthat/test-beta_2012.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-beta_2012.R -------------------------------------------------------------------------------- /tests/testthat/test-betatypesimplified_2008.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-betatypesimplified_2008.R -------------------------------------------------------------------------------- /tests/testthat/test-boatman_2017.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-boatman_2017.R -------------------------------------------------------------------------------- /tests/testthat/test-briere1.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-briere1.R -------------------------------------------------------------------------------- /tests/testthat/test-briere1simplified_1999.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-briere1simplified_1999.R -------------------------------------------------------------------------------- /tests/testthat/test-briere2_1999.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-briere2_1999.R -------------------------------------------------------------------------------- /tests/testthat/test-briere2simplified_1999.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-briere2simplified_1999.R -------------------------------------------------------------------------------- /tests/testthat/test-briereextended_2021.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-briereextended_2021.R -------------------------------------------------------------------------------- /tests/testthat/test-briereextendedsimplified_2021.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-briereextendedsimplified_2021.R -------------------------------------------------------------------------------- /tests/testthat/test-delong_2017.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-delong_2017.R -------------------------------------------------------------------------------- /tests/testthat/test-eubank_1973.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-eubank_1973.R -------------------------------------------------------------------------------- /tests/testthat/test-flextpc_2024.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-flextpc_2024.R -------------------------------------------------------------------------------- /tests/testthat/test-flinn_1991.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-flinn_1991.R -------------------------------------------------------------------------------- /tests/testthat/test-gaussian_1987.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-gaussian_1987.R -------------------------------------------------------------------------------- /tests/testthat/test-gaussianmodified_2006.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-gaussianmodified_2006.R -------------------------------------------------------------------------------- /tests/testthat/test-hinshelwood_1947.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-hinshelwood_1947.R -------------------------------------------------------------------------------- /tests/testthat/test-janisch1_1925.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-janisch1_1925.R -------------------------------------------------------------------------------- /tests/testthat/test-janisch2_1925.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-janisch2_1925.R -------------------------------------------------------------------------------- /tests/testthat/test-joehnk_2008.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-joehnk_2008.R -------------------------------------------------------------------------------- /tests/testthat/test-johnsonlewin_1946.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-johnsonlewin_1946.R -------------------------------------------------------------------------------- /tests/testthat/test-kamykowski_1985.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-kamykowski_1985.R -------------------------------------------------------------------------------- /tests/testthat/test-lactin2_1995.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-lactin2_1995.R -------------------------------------------------------------------------------- /tests/testthat/test-mitchell_2009.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-mitchell_2009.R -------------------------------------------------------------------------------- /tests/testthat/test-oneill_1972.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-oneill_1972.R -------------------------------------------------------------------------------- /tests/testthat/test-pawar_2018.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-pawar_2018.R -------------------------------------------------------------------------------- /tests/testthat/test-quadratic_2008.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-quadratic_2008.R -------------------------------------------------------------------------------- /tests/testthat/test-ratkowsky_1983.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-ratkowsky_1983.R -------------------------------------------------------------------------------- /tests/testthat/test-rezende_2019.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-rezende_2019.R -------------------------------------------------------------------------------- /tests/testthat/test-rosso_1993.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-rosso_1993.R -------------------------------------------------------------------------------- /tests/testthat/test-sharpeschoolfull_1981.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-sharpeschoolfull_1981.R -------------------------------------------------------------------------------- /tests/testthat/test-sharpeschoolhigh_1981.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-sharpeschoolhigh_1981.R -------------------------------------------------------------------------------- /tests/testthat/test-sharpeschoollow_1981.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-sharpeschoollow_1981.R -------------------------------------------------------------------------------- /tests/testthat/test-spain_1982.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-spain_1982.R -------------------------------------------------------------------------------- /tests/testthat/test-startingvalues.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-startingvalues.R -------------------------------------------------------------------------------- /tests/testthat/test-stinner_1974.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-stinner_1974.R -------------------------------------------------------------------------------- /tests/testthat/test-taylorsexton_1972.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-taylorsexton_1972.R -------------------------------------------------------------------------------- /tests/testthat/test-thomas_2012.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-thomas_2012.R -------------------------------------------------------------------------------- /tests/testthat/test-thomas_2017.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-thomas_2017.R -------------------------------------------------------------------------------- /tests/testthat/test-tomlinsonphillips_2015.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-tomlinsonphillips_2015.R -------------------------------------------------------------------------------- /tests/testthat/test-warrendreyer_2006.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-warrendreyer_2006.R -------------------------------------------------------------------------------- /tests/testthat/test-weibull_1995.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/tests/testthat/test-weibull_1995.R -------------------------------------------------------------------------------- /vignettes/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | *.R 3 | -------------------------------------------------------------------------------- /vignettes/adding_models.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/vignettes/adding_models.Rmd -------------------------------------------------------------------------------- /vignettes/bootstrapping_many_curves.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/vignettes/bootstrapping_many_curves.Rmd -------------------------------------------------------------------------------- /vignettes/bootstrapping_models.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/vignettes/bootstrapping_models.Rmd -------------------------------------------------------------------------------- /vignettes/fit_many_curves.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/vignettes/fit_many_curves.Rmd -------------------------------------------------------------------------------- /vignettes/fit_many_models.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/vignettes/fit_many_models.Rmd -------------------------------------------------------------------------------- /vignettes/model_averaging_selection.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/vignettes/model_averaging_selection.Rmd -------------------------------------------------------------------------------- /vignettes/model_weighting.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/vignettes/model_weighting.Rmd -------------------------------------------------------------------------------- /vignettes/quickfit_parallel.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/vignettes/quickfit_parallel.Rmd -------------------------------------------------------------------------------- /vignettes/rTPC.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/vignettes/rTPC.Rmd -------------------------------------------------------------------------------- /vignettes/weighted_bootstrapping.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/padpadpadpad/rTPC/HEAD/vignettes/weighted_bootstrapping.Rmd --------------------------------------------------------------------------------