├── .gitattributes ├── .gitignore ├── LICENSE.txt ├── README.md ├── cpp ├── CMakeLists.txt ├── buildConfig.bat ├── buildConfigRedirect.bat ├── common │ ├── image │ │ ├── ImageItk.cpp │ │ └── ImageItk.h │ ├── maths │ │ ├── Maths.h │ │ ├── Matrix.cpp │ │ ├── Matrix.h │ │ ├── Quaternion.h │ │ └── Vector.h │ ├── medical │ │ ├── Fluoro3draParams.h │ │ ├── HMM2D3D.cpp │ │ ├── HMM2D3D.h │ │ ├── Object2D3D.cpp │ │ ├── Object2D3D.h │ │ ├── Registration2D3D.cpp │ │ ├── Registration2D3D.h │ │ ├── Roadmapping.cpp │ │ ├── Roadmapping.h │ │ ├── ShapeSimilarity2D3D.cpp │ │ └── ShapeSimilarity2D3D.h │ ├── optimization │ │ ├── MultiParameterSearch.cpp │ │ └── MultiParameterSearch.h │ ├── registration │ │ ├── Base2D3DRegistration.cpp │ │ ├── Base2D3DRegistration.h │ │ ├── CallDistanceMetric.h │ │ ├── DefineDistanceMetric.h │ │ ├── MultiParameter2D3DRegistration.cpp │ │ ├── MultiParameter2D3DRegistration.h │ │ ├── Powell2D3DRegistration.cpp │ │ ├── Powell2D3DRegistration.h │ │ ├── ShapeSimilarity.cpp │ │ └── ShapeSimilarity.h │ ├── structure │ │ ├── PtList.cpp │ │ ├── PtList.h │ │ ├── Vessels.cpp │ │ ├── Vessels.h │ │ ├── VesselsStateTransitionProbabilities.cpp │ │ └── VesselsStateTransitionProbabilities.h │ └── util │ │ ├── File.cpp │ │ ├── File.h │ │ ├── LowLevel.cpp │ │ ├── LowLevel.h │ │ ├── Thread.h │ │ ├── Util.cpp │ │ ├── Util.h │ │ ├── UtilTime.cpp │ │ └── UtilTime.h ├── compile.bat ├── compileRedirect.bat ├── src │ └── TACE │ │ ├── Registration.cpp │ │ ├── Registration.h │ │ ├── ResampleAndSmoothPtList.cpp │ │ ├── ResampleAndSmoothPtList.h │ │ ├── ResampleAndSmoothVessels.cpp │ │ ├── ResampleAndSmoothVessels.h │ │ ├── TransformPtList.cpp │ │ ├── TransformPtList.h │ │ ├── TransformVessels.cpp │ │ ├── TransformVessels.h │ │ └── main.cpp └── thirdParties │ ├── bigr │ ├── ResampleAndSmoothXMarkerlist.cpp │ ├── ResampleAndSmoothXMarkerlist.h │ ├── SplineFitter.cpp │ ├── SplineFitter.h │ └── readme.txt │ ├── fastDelegate │ ├── CPOL.htm │ └── FastDelegate.h │ ├── mevislab │ └── mlLinearAlgebraTools.h │ ├── minizip │ ├── MiniZip64_Changes.txt │ ├── MiniZip64_info.txt │ ├── ioapi.c │ ├── ioapi.h │ ├── unzip.c │ └── unzip.h │ └── numpy │ ├── LICENSE.txt │ └── npy_math.h ├── data └── dataset1 │ ├── 3dra │ ├── 3dra_0001_3.0_vesselsStructCenterline.txt │ └── 3dra_0001_info.txt │ ├── dataList.txt │ ├── dataListFromPreviousFusion.txt │ ├── fluoro │ ├── centerlines │ │ ├── 0000_3.0_catheterCenterline.txt │ │ ├── 0001_3.0_catheterCenterline.txt │ │ ├── 0002_3.0_catheterCenterline.txt │ │ ├── 0003_3.0_catheterCenterline.txt │ │ ├── 0004_3.0_catheterCenterline.txt │ │ ├── 0005_3.0_catheterCenterline.txt │ │ ├── 0006_3.0_catheterCenterline.txt │ │ ├── 0007_3.0_catheterCenterline.txt │ │ ├── 0008_3.0_catheterCenterline.txt │ │ ├── 0009_3.0_catheterCenterline.txt │ │ ├── 0010_3.0_catheterCenterline.txt │ │ ├── 0011_3.0_catheterCenterline.txt │ │ ├── 0012_3.0_catheterCenterline.txt │ │ ├── 0013_3.0_catheterCenterline.txt │ │ ├── 0014_3.0_catheterCenterline.txt │ │ ├── 0015_3.0_catheterCenterline.txt │ │ ├── 0016_3.0_catheterCenterline.txt │ │ ├── 0017_3.0_catheterCenterline.txt │ │ ├── 0018_3.0_catheterCenterline.txt │ │ ├── 0019_3.0_catheterCenterline.txt │ │ ├── 0020_3.0_catheterCenterline.txt │ │ ├── 0021_3.0_catheterCenterline.txt │ │ ├── 0022_3.0_catheterCenterline.txt │ │ ├── 0023_3.0_catheterCenterline.txt │ │ ├── 0024_3.0_catheterCenterline.txt │ │ ├── 0025_3.0_catheterCenterline.txt │ │ ├── 0026_3.0_catheterCenterline.txt │ │ ├── 0027_3.0_catheterCenterline.txt │ │ ├── 0028_3.0_catheterCenterline.txt │ │ ├── 0029_3.0_catheterCenterline.txt │ │ ├── 0030_3.0_catheterCenterline.txt │ │ ├── 0031_3.0_catheterCenterline.txt │ │ ├── 0032_3.0_catheterCenterline.txt │ │ ├── 0033_3.0_catheterCenterline.txt │ │ ├── 0034_3.0_catheterCenterline.txt │ │ ├── 0035_3.0_catheterCenterline.txt │ │ ├── 0036_3.0_catheterCenterline.txt │ │ ├── 0037_3.0_catheterCenterline.txt │ │ ├── 0038_3.0_catheterCenterline.txt │ │ ├── 0039_3.0_catheterCenterline.txt │ │ ├── 0040_3.0_catheterCenterline.txt │ │ ├── 0041_3.0_catheterCenterline.txt │ │ ├── 0042_3.0_catheterCenterline.txt │ │ ├── 0043_3.0_catheterCenterline.txt │ │ ├── 0044_3.0_catheterCenterline.txt │ │ ├── 0045_3.0_catheterCenterline.txt │ │ ├── 0046_3.0_catheterCenterline.txt │ │ ├── 0047_3.0_catheterCenterline.txt │ │ ├── 0048_3.0_catheterCenterline.txt │ │ ├── 0049_3.0_catheterCenterline.txt │ │ ├── 0050_3.0_catheterCenterline.txt │ │ ├── 0051_3.0_catheterCenterline.txt │ │ ├── 0052_3.0_catheterCenterline.txt │ │ ├── 0053_3.0_catheterCenterline.txt │ │ ├── 0054_3.0_catheterCenterline.txt │ │ ├── 0055_3.0_catheterCenterline.txt │ │ ├── 0056_3.0_catheterCenterline.txt │ │ ├── 0057_3.0_catheterCenterline.txt │ │ ├── 0058_3.0_catheterCenterline.txt │ │ ├── 0059_3.0_catheterCenterline.txt │ │ ├── 0060_3.0_catheterCenterline.txt │ │ ├── 0061_3.0_catheterCenterline.txt │ │ ├── 0062_3.0_catheterCenterline.txt │ │ ├── 0063_3.0_catheterCenterline.txt │ │ ├── 0064_3.0_catheterCenterline.txt │ │ ├── 0065_3.0_catheterCenterline.txt │ │ ├── 0066_3.0_catheterCenterline.txt │ │ ├── 0067_3.0_catheterCenterline.txt │ │ ├── 0068_3.0_catheterCenterline.txt │ │ ├── 0069_3.0_catheterCenterline.txt │ │ ├── 0070_3.0_catheterCenterline.txt │ │ ├── 0071_3.0_catheterCenterline.txt │ │ ├── 0072_3.0_catheterCenterline.txt │ │ └── 0073_3.0_catheterCenterline.txt │ ├── infoFluoroCarmParameters.txt │ └── infoFluoroTransformations.txt │ └── fusion │ └── 3dra_0001_0000_fusion.txt ├── docs └── images │ ├── hmmWorkflow.jpg │ ├── pdf.png │ └── registrationExample.png ├── examples ├── HMMBruteforce │ ├── HMMBruteforce.bat │ ├── HMMBruteforceRedirect.bat │ └── configHMMBruteforce.txt ├── HMMPowell │ ├── HMMPowell.bat │ ├── HMMPowellRedirect.bat │ └── configHMMPowell.txt ├── shapeSimilarityBruteforce │ ├── ShapeSimilarityBruteforce.bat │ ├── ShapeSimilarityBruteforceRedirect.bat │ └── configShapeSimilarityBruteforce.txt └── shapeSimilarityPowell │ ├── ShapeSimilarityPowell.bat │ ├── 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