├── LICENSE ├── README.md ├── bin ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-35.pyc │ ├── __init__.cpython-36.pyc │ ├── infer.cpython-35.pyc │ ├── infer.cpython-36.pyc │ ├── train.cpython-35.pyc │ └── train.cpython-36.pyc ├── data │ ├── cnn_daily_mail_summarization │ │ ├── process_data.sh │ │ └── process_story.py │ ├── toy.sh │ └── wmt16_en_de.sh ├── infer.py ├── tools │ ├── beam_search_viz │ │ ├── tree.css │ │ └── tree.js │ ├── generate_beam_viz.py │ ├── generate_char_vocab.py │ ├── generate_toy_data.py │ ├── generate_vocab.py │ ├── multi-bleu.perl │ ├── profile.py │ ├── top_k_seq2seq.py │ ├── tree.css │ └── tree.js └── train.py ├── circle.yml ├── docs ├── concepts.md ├── contributing.md ├── data.md ├── decoders.md ├── encoders.md ├── extra.css ├── getting_started.md ├── help.md ├── image_captioning.md ├── images │ ├── nmt_tutorial_bleu.png │ └── nmt_tutorial_ppl.png ├── index.md ├── inference.md ├── license.md ├── models.md ├── nmt.md ├── results.md ├── summarization.md ├── tools.md └── training.md ├── evaluation ├── .ipynb_checkpoints │ └── reaction_evaluation-checkpoint.ipynb ├── beam_10_test_results ├── beam_1_test_results ├── beam_20_test_results ├── beam_3_test_results ├── beam_50_test_results ├── beam_5_test_results └── reaction_evaluation.ipynb ├── example_configs ├── nmt_large_jul_5_2017_1.yml ├── text_metrics_bpe.yml └── train_seq2seq_jul_5_2017_1.yml ├── google_seq2seq_infer_jul_5_2017_1_beam_10.sh ├── google_seq2seq_infer_jul_5_2017_1_beam_20.sh ├── google_seq2seq_infer_jul_5_2017_1_beam_3.sh ├── google_seq2seq_infer_jul_5_2017_1_beam_5.sh ├── google_seq2seq_infer_jul_5_2017_1_beam_50.sh ├── google_seq2seq_infer_jul_5_2017_1_nobeam.sh ├── google_seq2seq_train_jul_5_2017_1.sh ├── mkdocs.yml ├── model_working_directory └── readme ├── predictions └── readme ├── processed_data ├── test_sources ├── test_targets ├── train_sources ├── train_targets ├── valid_sources ├── valid_targets └── vocab ├── pylintrc ├── seq2seq.egg-info ├── PKG-INFO ├── SOURCES.txt ├── dependency_links.txt ├── requires.txt └── top_level.txt ├── seq2seq ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-35.pyc │ ├── configurable.cpython-35.pyc │ ├── graph_module.cpython-35.pyc │ ├── graph_utils.cpython-35.pyc │ └── losses.cpython-35.pyc ├── configurable.py ├── contrib │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-35.pyc │ │ └── rnn_cell.cpython-35.pyc │ ├── rnn_cell.py │ └── seq2seq │ │ ├── __init__.py │ │ ├── __pycache__ │ │ ├── __init__.cpython-35.pyc │ │ ├── decoder.cpython-35.pyc │ │ └── helper.cpython-35.pyc │ │ ├── decoder.py │ │ └── helper.py ├── data │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-35.pyc │ │ ├── input_pipeline.cpython-35.pyc │ │ ├── parallel_data_provider.cpython-35.pyc │ │ ├── postproc.cpython-35.pyc │ │ ├── sequence_example_decoder.cpython-35.pyc │ │ ├── split_tokens_decoder.cpython-35.pyc │ │ └── vocab.cpython-35.pyc │ ├── input_pipeline.py │ ├── parallel_data_provider.py │ ├── postproc.py │ ├── sequence_example_decoder.py │ ├── split_tokens_decoder.py │ └── vocab.py ├── decoders │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-35.pyc │ │ ├── attention.cpython-35.pyc │ │ ├── attention_decoder.cpython-35.pyc │ │ ├── basic_decoder.cpython-35.pyc │ │ ├── beam_search_decoder.cpython-35.pyc │ │ └── rnn_decoder.cpython-35.pyc │ ├── attention.py │ ├── attention_decoder.py │ ├── basic_decoder.py │ ├── beam_search_decoder.py │ └── rnn_decoder.py ├── encoders │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-35.pyc │ │ ├── conv_encoder.cpython-35.pyc │ │ ├── encoder.cpython-35.pyc │ │ ├── image_encoder.cpython-35.pyc │ │ ├── pooling_encoder.cpython-35.pyc │ │ └── rnn_encoder.cpython-35.pyc │ ├── conv_encoder.py │ ├── encoder.py │ ├── image_encoder.py │ ├── pooling_encoder.py │ └── rnn_encoder.py ├── graph_module.py ├── graph_utils.py ├── inference │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-35.pyc │ │ ├── beam_search.cpython-35.pyc │ │ └── inference.cpython-35.pyc │ ├── beam_search.py │ └── inference.py ├── losses.py ├── metrics │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-35.pyc │ │ ├── bleu.cpython-35.pyc │ │ ├── metric_specs.cpython-35.pyc │ │ └── rouge.cpython-35.pyc │ ├── bleu.py │ ├── metric_specs.py │ └── rouge.py ├── models │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-35.pyc │ │ ├── attention_seq2seq.cpython-35.pyc │ │ ├── basic_seq2seq.cpython-35.pyc │ │ ├── bridges.cpython-35.pyc │ │ ├── image2seq.cpython-35.pyc │ │ ├── model_base.cpython-35.pyc │ │ └── seq2seq_model.cpython-35.pyc │ ├── attention_seq2seq.py │ ├── basic_seq2seq.py │ ├── bridges.py │ ├── image2seq.py │ ├── model_base.py │ └── seq2seq_model.py ├── tasks │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-35.pyc │ │ ├── decode_text.cpython-35.pyc │ │ ├── dump_attention.cpython-35.pyc │ │ ├── dump_beams.cpython-35.pyc │ │ └── inference_task.cpython-35.pyc │ ├── decode_text.py │ ├── dump_attention.py │ ├── dump_beams.py │ └── inference_task.py ├── test │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-35.pyc │ │ └── utils.cpython-35.pyc │ ├── attention_test.py │ ├── beam_search_test.py │ ├── bridges_test.py │ ├── conv_encoder_test.py │ ├── data_test.py │ ├── data_test_1.py │ ├── decoder_test.py │ ├── example_config_test.py │ ├── hooks_test.py │ ├── input_pipeline_test.py │ ├── losses_test.py │ ├── metrics_test.py │ ├── models_test.py │ ├── models_test_1.py │ ├── pipeline_test.py │ ├── pooling_encoder_test.py │ ├── rnn_cell_test.py │ ├── rnn_encoder_test.py │ ├── train_utils_test.py │ ├── utils.py │ └── vocab_test.py └── training │ ├── __init__.py │ ├── __pycache__ │ ├── __init__.cpython-35.pyc │ ├── hooks.cpython-35.pyc │ └── utils.cpython-35.pyc │ ├── hooks.py │ └── utils.py ├── setup.py └── tox.ini /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pandegroup/reaction_prediction_seq2seq/HEAD/LICENSE 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