├── README.md ├── collect.sh ├── evaluation ├── vcf_evaluation.sh └── vcf_preprocess.sh ├── hap.names ├── haps.list ├── untangle.sh ├── vcf_extract.sh ├── vcf_extract_phased.sh └── workflows └── confident_variants.md /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pangenome/HPRCyear1v2genbank/HEAD/README.md -------------------------------------------------------------------------------- /collect.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pangenome/HPRCyear1v2genbank/HEAD/collect.sh -------------------------------------------------------------------------------- /evaluation/vcf_evaluation.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pangenome/HPRCyear1v2genbank/HEAD/evaluation/vcf_evaluation.sh -------------------------------------------------------------------------------- /evaluation/vcf_preprocess.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pangenome/HPRCyear1v2genbank/HEAD/evaluation/vcf_preprocess.sh -------------------------------------------------------------------------------- /hap.names: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pangenome/HPRCyear1v2genbank/HEAD/hap.names -------------------------------------------------------------------------------- /haps.list: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pangenome/HPRCyear1v2genbank/HEAD/haps.list -------------------------------------------------------------------------------- /untangle.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pangenome/HPRCyear1v2genbank/HEAD/untangle.sh -------------------------------------------------------------------------------- /vcf_extract.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pangenome/HPRCyear1v2genbank/HEAD/vcf_extract.sh -------------------------------------------------------------------------------- /vcf_extract_phased.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pangenome/HPRCyear1v2genbank/HEAD/vcf_extract_phased.sh -------------------------------------------------------------------------------- /workflows/confident_variants.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pangenome/HPRCyear1v2genbank/HEAD/workflows/confident_variants.md --------------------------------------------------------------------------------