├── .idea ├── SpineParseNet.iml ├── encodings.xml ├── inspectionProfiles │ └── Project_Default.xml ├── misc.xml ├── modules.xml ├── vcs.xml └── workspace.xml ├── Figures └── Spine_parsing.gif ├── README.md ├── __pycache__ └── evaluate.cpython-36.pyc ├── augment ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-36.pyc │ ├── transforms.cpython-36.pyc │ └── transforms_2d.cpython-36.pyc ├── transformer-test.ipynb ├── transforms.py └── transforms_2d.py ├── cal_mean_std.py ├── coarse_semantic_feature.py ├── datasets ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-36.pyc │ └── coarse_h5.cpython-36.pyc ├── coarse_create_h5.py ├── coarse_h5.py ├── fine_create_h5.py ├── fine_h5.py └── high_resolution_create_h5.py ├── evaluate.py ├── evaluate_accuracy.py ├── evaluate_all_metrics.py ├── evaluate_all_metrics_coarse_fine.py ├── evaluate_coarse.py ├── evaluate_fine.py ├── main.sh ├── networks ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-36.pyc │ ├── buildingblocks.cpython-36.pyc │ ├── buildingblocks_2d.cpython-36.pyc │ ├── config.cpython-36.pyc │ ├── deeplab_xception_3d.cpython-36.pyc │ ├── deeplab_xception_gcn_3d.cpython-36.pyc │ ├── deeplab_xception_gcn_skipconnection_2d.cpython-36.pyc │ ├── deeplab_xception_gcn_skipconnection_3d.cpython-36.pyc │ ├── deeplab_xception_gcn_skipconnection_3d_modelparallel.cpython-36.pyc │ ├── deeplab_xception_skipconnection_2d.cpython-36.pyc │ ├── deeplab_xception_skipconnection_3d.cpython-36.pyc │ ├── deeplab_xception_skipconnection_3d_modelparallel.cpython-36.pyc │ ├── gcn.cpython-36.pyc │ ├── global_reasoning_unit.cpython-36.pyc │ ├── graph.cpython-36.pyc │ ├── losses.cpython-36.pyc │ ├── metrics.cpython-36.pyc │ ├── model.cpython-36.pyc │ ├── trainer.cpython-36.pyc │ ├── unet_2d.cpython-36.pyc │ └── utils.cpython-36.pyc ├── buildingblocks.py ├── buildingblocks_2d.py ├── config.py ├── deeplab_xception_2d.py ├── deeplab_xception_3d.py ├── deeplab_xception_gcn_3d.py ├── deeplab_xception_gcn_skipconnection_2d.py ├── deeplab_xception_gcn_skipconnection_3d.py ├── deeplab_xception_gcn_skipconnection_3d_modelparallel.py ├── deeplab_xception_skipconnection_2d.py ├── deeplab_xception_skipconnection_3d.py ├── deeplab_xception_skipconnection_3d_modelparallel.py ├── gcn.py ├── global_reasoning_unit.py ├── graph.py ├── losses.py ├── metrics.py ├── model.py ├── trainer.py ├── trainer_2d.py ├── unet_2d.py └── utils.py ├── overall_evaluate.py ├── test_coarse.py ├── test_coarse_fine.py ├── test_fine.py ├── test_model_parallel.py ├── train_coarse.py ├── train_fine.py └── train_model_parallel.py /.idea/SpineParseNet.iml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pangshumao/SpineParseNet/HEAD/.idea/SpineParseNet.iml -------------------------------------------------------------------------------- /.idea/encodings.xml: -------------------------------------------------------------------------------- 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