├── .gitignore ├── README.md ├── b.py ├── data2 ├── src-test.txt ├── src-train.txt ├── src-val.txt ├── tgt-test.txt ├── tgt-train.txt └── tgt-val.txt ├── docs ├── Makefile ├── generate.sh ├── requirements.txt └── source │ ├── CONTRIBUTING.md │ ├── FAQ.md │ ├── Library.ipynb │ ├── Library.md │ ├── Summarization.md │ ├── conf.py │ ├── examples.rst │ ├── extended.md │ ├── im2text.md │ ├── index.md │ ├── index.rst │ ├── main.md │ ├── modules.rst │ ├── onmt.io.rst │ ├── onmt.modules.rst │ ├── onmt.rst │ ├── onmt.translation.rst │ ├── options │ ├── preprocess.md │ ├── train.md │ └── translate.md │ ├── quickstart.md │ ├── ref.rst │ ├── refs.bib │ └── speech2text.md ├── eval.sh ├── experiments └── readme.txt ├── onmt ├── GAT.py ├── GATGATE.py ├── GCN.py ├── MPNNs │ ├── MPNN.py │ ├── MPNNv2.py │ ├── MPNNv3.py │ ├── MessageFunction.py │ ├── ReadoutFunction.py │ ├── UpdateFunction.py │ ├── __init__.py │ └── nnet.py ├── MYGCN.py ├── __init__.py ├── decoders │ ├── __init__.py │ ├── cnn_decoder.py │ ├── decoder.py │ ├── ensemble.py │ └── transformer.py ├── encoders │ ├── __init__.py │ ├── audio_encoder.py │ ├── cnn_encoder.py │ ├── encoder.py │ ├── image_encoder.py │ ├── mean_encoder.py │ ├── rnn_encoder.py │ └── transformer.py ├── inputters │ ├── __init__.py │ ├── audio_dataset.py │ ├── dataset_base.py │ ├── image_dataset.py │ ├── inputter.py │ └── text_dataset.py ├── model_builder.py ├── models │ ├── __init__.py │ ├── model.py │ ├── model_saver.py │ ├── sru.py │ └── stacked_rnn.py ├── modules │ ├── __init__.py │ ├── average_attn.py │ ├── conv_multi_step_attention.py │ ├── copy_generator.py │ ├── embeddings.py │ ├── gate.py │ ├── global_attention.py │ ├── multi_headed_attn.py │ ├── position_ffn.py │ ├── sparse_activations.py │ ├── sparse_losses.py │ ├── structured_attention.py │ ├── util_class.py │ └── weight_norm.py ├── myutils.py ├── opts.py ├── tests │ ├── __init__.py │ ├── output_hyp.txt │ ├── pull_request_chk.sh │ ├── rebuild_test_models.sh │ ├── test_attention.py │ ├── test_models.py │ ├── test_models.sh │ ├── test_preprocess.py │ └── test_simple.py ├── train_single.py ├── trainer.py ├── translate │ ├── __init__.py │ ├── beam.py │ ├── penalties.py │ ├── translation.py │ ├── translation_server.py │ └── translator.py └── utils │ ├── __init__.py │ ├── cnn_factory.py │ ├── distributed.py │ ├── logging.py │ ├── loss.py │ ├── masking.py │ ├── misc.py │ ├── optimizers.py │ ├── report_manager.py │ ├── rnn_factory.py │ └── statistics.py ├── pre.sh ├── preprocess.py ├── replace_torchtext ├── batch.py ├── field.py └── iterator.py ├── score_predictions.py ├── server.py ├── setup.py ├── tools ├── README.md ├── apply_bpe.py ├── average_models.py ├── bpe_pipeline.sh ├── detokenize.perl ├── embeddings_to_torch.py ├── extract_embeddings.py ├── learn_bpe.py ├── make_rxn_vocab_mask.py ├── multi-bleu-detok.perl ├── nonbreaking_prefixes │ ├── README.txt │ ├── nonbreaking_prefix.ca │ ├── nonbreaking_prefix.cs │ ├── nonbreaking_prefix.de │ ├── nonbreaking_prefix.el │ ├── nonbreaking_prefix.en │ ├── nonbreaking_prefix.es │ ├── nonbreaking_prefix.fi │ ├── nonbreaking_prefix.fr │ ├── nonbreaking_prefix.ga │ ├── nonbreaking_prefix.hu │ ├── nonbreaking_prefix.is │ ├── nonbreaking_prefix.it │ ├── nonbreaking_prefix.lt │ ├── nonbreaking_prefix.lv │ ├── nonbreaking_prefix.nl │ ├── nonbreaking_prefix.pl │ ├── nonbreaking_prefix.ro │ ├── nonbreaking_prefix.ru │ ├── nonbreaking_prefix.sk │ ├── nonbreaking_prefix.sl │ ├── nonbreaking_prefix.sv │ ├── nonbreaking_prefix.ta │ ├── nonbreaking_prefix.yue │ └── nonbreaking_prefix.zh ├── release_model.py ├── test_rouge.py └── tokenizer.perl ├── train.py ├── train.sh ├── traintest.sh ├── trans.sh └── translate.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/README.md -------------------------------------------------------------------------------- /b.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/b.py -------------------------------------------------------------------------------- /data2/src-test.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/data2/src-test.txt -------------------------------------------------------------------------------- /data2/src-train.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/data2/src-train.txt -------------------------------------------------------------------------------- /data2/src-val.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/data2/src-val.txt -------------------------------------------------------------------------------- /data2/tgt-test.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/data2/tgt-test.txt -------------------------------------------------------------------------------- /data2/tgt-train.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/data2/tgt-train.txt -------------------------------------------------------------------------------- /data2/tgt-val.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/data2/tgt-val.txt -------------------------------------------------------------------------------- /docs/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/Makefile -------------------------------------------------------------------------------- /docs/generate.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/generate.sh -------------------------------------------------------------------------------- /docs/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/requirements.txt -------------------------------------------------------------------------------- /docs/source/CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/CONTRIBUTING.md -------------------------------------------------------------------------------- /docs/source/FAQ.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/FAQ.md -------------------------------------------------------------------------------- /docs/source/Library.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/Library.ipynb -------------------------------------------------------------------------------- /docs/source/Library.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/Library.md -------------------------------------------------------------------------------- /docs/source/Summarization.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/Summarization.md -------------------------------------------------------------------------------- /docs/source/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/conf.py -------------------------------------------------------------------------------- /docs/source/examples.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/examples.rst -------------------------------------------------------------------------------- /docs/source/extended.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/extended.md -------------------------------------------------------------------------------- /docs/source/im2text.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/im2text.md -------------------------------------------------------------------------------- /docs/source/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/index.md -------------------------------------------------------------------------------- /docs/source/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/index.rst -------------------------------------------------------------------------------- /docs/source/main.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/main.md -------------------------------------------------------------------------------- /docs/source/modules.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/modules.rst -------------------------------------------------------------------------------- /docs/source/onmt.io.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/onmt.io.rst -------------------------------------------------------------------------------- /docs/source/onmt.modules.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/onmt.modules.rst -------------------------------------------------------------------------------- /docs/source/onmt.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/onmt.rst -------------------------------------------------------------------------------- /docs/source/onmt.translation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/onmt.translation.rst -------------------------------------------------------------------------------- /docs/source/options/preprocess.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/options/preprocess.md -------------------------------------------------------------------------------- /docs/source/options/train.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/options/train.md -------------------------------------------------------------------------------- /docs/source/options/translate.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/options/translate.md -------------------------------------------------------------------------------- /docs/source/quickstart.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/quickstart.md -------------------------------------------------------------------------------- /docs/source/ref.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/ref.rst -------------------------------------------------------------------------------- /docs/source/refs.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/refs.bib -------------------------------------------------------------------------------- /docs/source/speech2text.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/docs/source/speech2text.md -------------------------------------------------------------------------------- /eval.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/eval.sh -------------------------------------------------------------------------------- /experiments/readme.txt: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /onmt/GAT.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/GAT.py -------------------------------------------------------------------------------- /onmt/GATGATE.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/GATGATE.py -------------------------------------------------------------------------------- /onmt/GCN.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/GCN.py -------------------------------------------------------------------------------- /onmt/MPNNs/MPNN.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/MPNNs/MPNN.py -------------------------------------------------------------------------------- /onmt/MPNNs/MPNNv2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/MPNNs/MPNNv2.py -------------------------------------------------------------------------------- /onmt/MPNNs/MPNNv3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/MPNNs/MPNNv3.py -------------------------------------------------------------------------------- /onmt/MPNNs/MessageFunction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/MPNNs/MessageFunction.py -------------------------------------------------------------------------------- /onmt/MPNNs/ReadoutFunction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/MPNNs/ReadoutFunction.py -------------------------------------------------------------------------------- /onmt/MPNNs/UpdateFunction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/MPNNs/UpdateFunction.py -------------------------------------------------------------------------------- /onmt/MPNNs/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /onmt/MPNNs/nnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/MPNNs/nnet.py -------------------------------------------------------------------------------- /onmt/MYGCN.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/MYGCN.py -------------------------------------------------------------------------------- /onmt/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/__init__.py -------------------------------------------------------------------------------- /onmt/decoders/__init__.py: -------------------------------------------------------------------------------- 1 | """Module defining decoders.""" 2 | -------------------------------------------------------------------------------- /onmt/decoders/cnn_decoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/decoders/cnn_decoder.py -------------------------------------------------------------------------------- /onmt/decoders/decoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/decoders/decoder.py -------------------------------------------------------------------------------- /onmt/decoders/ensemble.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/decoders/ensemble.py -------------------------------------------------------------------------------- /onmt/decoders/transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/decoders/transformer.py -------------------------------------------------------------------------------- /onmt/encoders/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/encoders/__init__.py -------------------------------------------------------------------------------- /onmt/encoders/audio_encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/encoders/audio_encoder.py -------------------------------------------------------------------------------- /onmt/encoders/cnn_encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/encoders/cnn_encoder.py -------------------------------------------------------------------------------- /onmt/encoders/encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/encoders/encoder.py -------------------------------------------------------------------------------- /onmt/encoders/image_encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/encoders/image_encoder.py -------------------------------------------------------------------------------- /onmt/encoders/mean_encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/encoders/mean_encoder.py -------------------------------------------------------------------------------- /onmt/encoders/rnn_encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/encoders/rnn_encoder.py -------------------------------------------------------------------------------- /onmt/encoders/transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/encoders/transformer.py -------------------------------------------------------------------------------- /onmt/inputters/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/inputters/__init__.py -------------------------------------------------------------------------------- /onmt/inputters/audio_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/inputters/audio_dataset.py -------------------------------------------------------------------------------- /onmt/inputters/dataset_base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/inputters/dataset_base.py -------------------------------------------------------------------------------- /onmt/inputters/image_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/inputters/image_dataset.py -------------------------------------------------------------------------------- /onmt/inputters/inputter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/inputters/inputter.py -------------------------------------------------------------------------------- /onmt/inputters/text_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/inputters/text_dataset.py -------------------------------------------------------------------------------- /onmt/model_builder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/model_builder.py -------------------------------------------------------------------------------- /onmt/models/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/models/__init__.py -------------------------------------------------------------------------------- /onmt/models/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/models/model.py -------------------------------------------------------------------------------- /onmt/models/model_saver.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/models/model_saver.py -------------------------------------------------------------------------------- /onmt/models/sru.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/models/sru.py -------------------------------------------------------------------------------- /onmt/models/stacked_rnn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/models/stacked_rnn.py -------------------------------------------------------------------------------- /onmt/modules/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/__init__.py -------------------------------------------------------------------------------- /onmt/modules/average_attn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/average_attn.py -------------------------------------------------------------------------------- /onmt/modules/conv_multi_step_attention.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/conv_multi_step_attention.py -------------------------------------------------------------------------------- /onmt/modules/copy_generator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/copy_generator.py -------------------------------------------------------------------------------- /onmt/modules/embeddings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/embeddings.py -------------------------------------------------------------------------------- /onmt/modules/gate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/gate.py -------------------------------------------------------------------------------- /onmt/modules/global_attention.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/global_attention.py -------------------------------------------------------------------------------- /onmt/modules/multi_headed_attn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/multi_headed_attn.py -------------------------------------------------------------------------------- /onmt/modules/position_ffn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/position_ffn.py -------------------------------------------------------------------------------- /onmt/modules/sparse_activations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/sparse_activations.py -------------------------------------------------------------------------------- /onmt/modules/sparse_losses.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/sparse_losses.py -------------------------------------------------------------------------------- /onmt/modules/structured_attention.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/structured_attention.py -------------------------------------------------------------------------------- /onmt/modules/util_class.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/util_class.py -------------------------------------------------------------------------------- /onmt/modules/weight_norm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/modules/weight_norm.py -------------------------------------------------------------------------------- /onmt/myutils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/myutils.py -------------------------------------------------------------------------------- /onmt/opts.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/opts.py -------------------------------------------------------------------------------- /onmt/tests/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /onmt/tests/output_hyp.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/tests/output_hyp.txt -------------------------------------------------------------------------------- /onmt/tests/pull_request_chk.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/tests/pull_request_chk.sh -------------------------------------------------------------------------------- /onmt/tests/rebuild_test_models.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/tests/rebuild_test_models.sh -------------------------------------------------------------------------------- /onmt/tests/test_attention.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/tests/test_attention.py -------------------------------------------------------------------------------- /onmt/tests/test_models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/tests/test_models.py -------------------------------------------------------------------------------- /onmt/tests/test_models.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/tests/test_models.sh -------------------------------------------------------------------------------- /onmt/tests/test_preprocess.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/tests/test_preprocess.py -------------------------------------------------------------------------------- /onmt/tests/test_simple.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/tests/test_simple.py -------------------------------------------------------------------------------- /onmt/train_single.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/train_single.py -------------------------------------------------------------------------------- /onmt/trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/trainer.py -------------------------------------------------------------------------------- /onmt/translate/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/translate/__init__.py -------------------------------------------------------------------------------- /onmt/translate/beam.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/translate/beam.py -------------------------------------------------------------------------------- /onmt/translate/penalties.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/translate/penalties.py -------------------------------------------------------------------------------- /onmt/translate/translation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/translate/translation.py -------------------------------------------------------------------------------- /onmt/translate/translation_server.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/translate/translation_server.py -------------------------------------------------------------------------------- /onmt/translate/translator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/translate/translator.py -------------------------------------------------------------------------------- /onmt/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/utils/__init__.py -------------------------------------------------------------------------------- /onmt/utils/cnn_factory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/utils/cnn_factory.py -------------------------------------------------------------------------------- /onmt/utils/distributed.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/utils/distributed.py -------------------------------------------------------------------------------- /onmt/utils/logging.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/utils/logging.py -------------------------------------------------------------------------------- /onmt/utils/loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/utils/loss.py -------------------------------------------------------------------------------- /onmt/utils/masking.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/utils/masking.py -------------------------------------------------------------------------------- /onmt/utils/misc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/utils/misc.py -------------------------------------------------------------------------------- /onmt/utils/optimizers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/utils/optimizers.py -------------------------------------------------------------------------------- /onmt/utils/report_manager.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/utils/report_manager.py -------------------------------------------------------------------------------- /onmt/utils/rnn_factory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/utils/rnn_factory.py -------------------------------------------------------------------------------- /onmt/utils/statistics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/onmt/utils/statistics.py -------------------------------------------------------------------------------- /pre.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/pre.sh -------------------------------------------------------------------------------- /preprocess.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/preprocess.py -------------------------------------------------------------------------------- /replace_torchtext/batch.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/replace_torchtext/batch.py -------------------------------------------------------------------------------- /replace_torchtext/field.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/replace_torchtext/field.py -------------------------------------------------------------------------------- /replace_torchtext/iterator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/replace_torchtext/iterator.py -------------------------------------------------------------------------------- /score_predictions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/score_predictions.py -------------------------------------------------------------------------------- /server.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/server.py -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/setup.py -------------------------------------------------------------------------------- /tools/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/README.md -------------------------------------------------------------------------------- /tools/apply_bpe.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/apply_bpe.py -------------------------------------------------------------------------------- /tools/average_models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/average_models.py -------------------------------------------------------------------------------- /tools/bpe_pipeline.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/bpe_pipeline.sh -------------------------------------------------------------------------------- /tools/detokenize.perl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/detokenize.perl -------------------------------------------------------------------------------- /tools/embeddings_to_torch.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/embeddings_to_torch.py -------------------------------------------------------------------------------- /tools/extract_embeddings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/extract_embeddings.py -------------------------------------------------------------------------------- /tools/learn_bpe.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/learn_bpe.py -------------------------------------------------------------------------------- /tools/make_rxn_vocab_mask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/make_rxn_vocab_mask.py -------------------------------------------------------------------------------- /tools/multi-bleu-detok.perl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/multi-bleu-detok.perl -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/README.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/README.txt -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.ca: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.ca -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.cs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.cs -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.de: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.de -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.el: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.el -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.en: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.en -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.es: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.es -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.fi: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.fi -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.fr: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.fr -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.ga: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.ga -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.hu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.hu -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.is: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.is -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.it: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.it -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.lt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.lt -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.lv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.lv -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.nl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.nl -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.pl -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.ro: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.ro -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.ru: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.ru -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.sk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.sk -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.sl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.sl -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.sv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.sv -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.ta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.ta -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.yue: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.yue -------------------------------------------------------------------------------- /tools/nonbreaking_prefixes/nonbreaking_prefix.zh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/nonbreaking_prefixes/nonbreaking_prefix.zh -------------------------------------------------------------------------------- /tools/release_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/release_model.py -------------------------------------------------------------------------------- /tools/test_rouge.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/test_rouge.py -------------------------------------------------------------------------------- /tools/tokenizer.perl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/tools/tokenizer.perl -------------------------------------------------------------------------------- /train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/train.py -------------------------------------------------------------------------------- /train.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/train.sh -------------------------------------------------------------------------------- /traintest.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/traintest.sh -------------------------------------------------------------------------------- /trans.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/trans.sh -------------------------------------------------------------------------------- /translate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/papercodekl/MolecularGET/HEAD/translate.py --------------------------------------------------------------------------------