├── .gitignore ├── .travis.yml ├── LICENSE ├── README.md ├── pepsickle ├── __init__.py ├── __main__.py ├── in-vitro-models │ ├── in-vitro_human │ │ └── model.joblib │ └── in-vitro_mammal │ │ └── model.joblib ├── model_functions.py ├── sequence_featurization_tools.py └── trained_model_dict.pickle ├── pepsickle_conda_build.yml ├── requirements.txt ├── setup.cfg ├── setup.py └── tests ├── P43357.fasta └── test___init__.py /.gitignore: -------------------------------------------------------------------------------- 1 | /pepsickle.egg-info/ 2 | /dist/ 3 | /MANIFEST.in 4 | -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/.travis.yml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/README.md -------------------------------------------------------------------------------- /pepsickle/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/pepsickle/__init__.py -------------------------------------------------------------------------------- /pepsickle/__main__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/pepsickle/__main__.py -------------------------------------------------------------------------------- /pepsickle/in-vitro-models/in-vitro_human/model.joblib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/pepsickle/in-vitro-models/in-vitro_human/model.joblib -------------------------------------------------------------------------------- /pepsickle/in-vitro-models/in-vitro_mammal/model.joblib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/pepsickle/in-vitro-models/in-vitro_mammal/model.joblib -------------------------------------------------------------------------------- /pepsickle/model_functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/pepsickle/model_functions.py -------------------------------------------------------------------------------- /pepsickle/sequence_featurization_tools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/pepsickle/sequence_featurization_tools.py -------------------------------------------------------------------------------- /pepsickle/trained_model_dict.pickle: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/pepsickle/trained_model_dict.pickle -------------------------------------------------------------------------------- /pepsickle_conda_build.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/pepsickle_conda_build.yml -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- 1 | [metadata] 2 | description-file = README.md 3 | -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/setup.py -------------------------------------------------------------------------------- /tests/P43357.fasta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/tests/P43357.fasta -------------------------------------------------------------------------------- /tests/test___init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pdxgx/pepsickle/HEAD/tests/test___init__.py --------------------------------------------------------------------------------