├── Dockerfile ├── LICENSE.txt ├── README.md ├── TUTORIAL_SRA.md ├── Tutorial ├── AD5_R1.fastq.gz ├── AD5_R2.fastq.gz ├── README.md ├── hifi_reads.fq.gz └── reference.fasta ├── bin ├── MITGARD-LR.py ├── MITGARD.py ├── RearrangementCheck.py ├── msa2consensus.py └── sam2msa.py ├── install_MITGARD.sh ├── install_NCBITaxa.py ├── installing_dependencies.md ├── mitgard_env.yml └── mitgard_logo.png /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pedronachtigall/MITGARD/HEAD/Dockerfile -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pedronachtigall/MITGARD/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 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