├── LICENSE ├── MANIFEST.in ├── NLP_exercises_ZP.ipynb ├── README.md ├── alloy2vec ├── postprocessing │ ├── README │ └── contextSimilarity │ │ └── parallel_version │ │ ├── alloyDesign-para.py │ │ ├── elements.py │ │ ├── elements_wv.csv │ │ ├── elements_wvmodel_2003_12-15-20.csv │ │ ├── elements_wvmodel_2004_12-15-20.csv │ │ ├── elements_wvmodel_2011_12-15-20.csv │ │ ├── elements_wvmodel_2016_12-15-20.csv │ │ └── sub-text-mining.sh ├── processing │ ├── __init__.py │ ├── data │ │ ├── PeriodicTableJSON.json │ │ ├── analogies.txt │ │ ├── clean_corpus.py │ │ ├── cleanedcorpus_pei │ │ ├── copora_dois │ │ ├── corpus_by_year │ │ │ └── combine.sh │ │ ├── corpus_example │ │ ├── corpus_example2 │ │ ├── corpus_pei │ │ ├── my_process.py │ │ ├── my_test_process.py │ │ ├── seperate-abstracts.py │ │ └── sub-text-mining.sh │ ├── process.py │ ├── process.py-original │ ├── raw-data-processing │ │ ├── fun_read_process_abstract.py │ │ ├── legacy │ │ │ └── process_json-original.py │ │ ├── main_read_process_abstract.py │ │ ├── materials_journals_only │ │ │ ├── fun_read_process_abstract.py │ │ │ ├── main_read_process_abstract.py │ │ │ ├── read_process_json_abstract_original.py │ │ │ └── sub-text-mining.sh │ │ ├── materials_short.dat │ │ ├── read_process_json_abstract_original.py │ │ ├── specify-task.sh │ │ └── sub-text-mining.sh │ └── tests │ │ ├── my_test_process.py │ │ └── test_process.py ├── train-topic-model │ ├── run-LDA.py │ └── sub-LDA.sh └── training │ ├── READEME │ ├── README │ ├── __init__.py │ ├── check_analogy.py │ ├── check_trained_model.py │ ├── cosine_similarity.png │ ├── data │ ├── PeriodicTableJSON.json │ ├── analogies.txt │ └── corpus_example │ ├── get_tsv_projector_visualizer.py │ ├── helpers │ ├── __init__.py │ └── utils.py │ ├── my_process.py │ ├── phrase2vec.py │ ├── plot_bar.py │ ├── run-text-mining-command.sh │ ├── singularity-gensim.sh │ ├── slurm-14935475.out │ ├── slurm-14935476.out │ └── sub-phrase2vec.sh ├── command-lauch-env ├── 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