├── .gitignore ├── ProgrammingHomework1 ├── ERR037900_1.first1000.fastq ├── homework1.py ├── lambda_virus.fa └── phix.fa ├── ProgrammingHomework2 ├── 1110.txt.utf-8 ├── bm_preproc.py ├── chr1.GRCh38.excerpt.fasta ├── homework2.py └── kmer_index.py ├── ProgrammingHomework3 ├── 0440_approx__editdist3.pdf ├── ERR266411_1.for_asm.fastq ├── chr1.GRCh38.excerpt.fasta └── homework3.py ├── ProgrammingHomework4 ├── ads1_week4_reads.fq └── homework4.py └── README.md /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pejvan/Algorithms-for-DNA-Sequencing/HEAD/.gitignore -------------------------------------------------------------------------------- /ProgrammingHomework1/ERR037900_1.first1000.fastq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pejvan/Algorithms-for-DNA-Sequencing/HEAD/ProgrammingHomework1/ERR037900_1.first1000.fastq 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