├── CancerCellCRCTransformer ├── README.md ├── config.yaml ├── evaluations_user_study.xlsx ├── experimental_results.xlsx ├── train_num_samples.py ├── trained_models │ ├── BRAF_CRC_model.pth │ ├── KRAS_CRC_model.pth │ └── MSI_high_CRC_model.pth └── visualizations │ ├── 2023-07_graphical-abstract.jpg │ ├── UserStudy.ipynb │ ├── Visualize_results.ipynb │ └── model.png ├── Evaluation.ipynb ├── LICENSE ├── README.md ├── Visualizations.ipynb ├── classifier.py ├── config.yaml ├── data.py ├── data_config.yaml ├── environment.yaml ├── main.py ├── models └── aggregators │ ├── __init__.py │ ├── aggregator.py │ ├── attentionmil.py │ ├── lamil.py │ ├── model_utils.py │ ├── perceiver.py │ ├── test_aggregators.py │ ├── transformer.py │ └── transmil.py ├── options.py ├── test.py ├── test_k-fold.py ├── train_k-fold.py ├── tune.py └── utils.py /CancerCellCRCTransformer/README.md: -------------------------------------------------------------------------------- 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