├── README.md ├── beamerPreamble ├── Makefile ├── b1.Rnw ├── b2.rnw ├── preambleArticle.Rnw ├── preambleHandout.Rnw ├── preambleNotes.Rnw ├── preamblePresent.Rnw └── preambleSlides.Rnw ├── checkInstalled ├── complex_demo ├── nonrecursive │ ├── Makefile │ ├── analysis │ │ ├── Makefile │ │ ├── analyse_simple_csv.R │ │ ├── module.mk │ │ └── summary_simple_csv.R │ ├── data │ │ ├── derived │ │ │ └── .gitignore │ │ └── original │ │ │ └── simple.csv │ ├── readMergeData │ │ ├── Makefile │ │ ├── clean_simple_csv.R │ │ ├── module.mk │ │ ├── read_codebook_simple.R │ │ └── read_simple_csv.R │ ├── reports │ │ ├── Makefile │ │ ├── analyse_report.Rmd │ │ ├── module.mk │ │ └── summary_report.Rmd │ └── root.mk └── recursive │ ├── Makefile │ ├── analysis │ ├── Makefile │ ├── analyse_simple_csv.R │ └── summary_simple_csv.R │ ├── data │ ├── derived │ │ └── .gitignore │ └── original │ │ └── simple.csv │ ├── readMergeData │ ├── Makefile │ ├── clean_simple_csv.R │ └── read_simple_csv.R │ └── reports │ ├── Makefile │ ├── analyse_report.Rmd │ └── summary_report.Rmd ├── cpMakeTemplate ├── find_repeat_def.bash ├── install.txt ├── makeTemplates ├── Makefile ├── Makefile.rsync ├── Makefile.rsync2 ├── Makefile.runR └── install.txt ├── markdown_example ├── Makefile ├── test.Rmd └── test2.Rmd ├── multiple_targets ├── Makefile ├── plots.R └── simple.RData ├── r-rules-functions.mk ├── r-rules.mk ├── simple_demo ├── Makefile ├── linmod.R ├── read.R ├── report1.Rmd ├── report2.Rmd └── simple.csv ├── sweave_knitr ├── 002-minimal.rnw ├── Makefile ├── Makefile.both ├── Makefile.knitr ├── Makefile.sweave ├── exampleSweave.rnw ├── foo.Rnw ├── knitr-minimal.Rnw ├── notes.org └── r-rules.mk ├── target-specific-variables ├── Makefile ├── Makefile.alternate └── minimal.Rmd └── tests ├── Makefile ├── Makefile.system ├── beamer1.Rnw ├── beamer2.rnw ├── knitr-minimal.Rnw ├── test-stitch.R ├── test.Rmd └── test2.rmd /README.md: -------------------------------------------------------------------------------- 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