├── .gitignore ├── .travis.yml ├── LICENSE.rst ├── NOTES.rst ├── README.rst ├── fetch_sample_data.sh ├── reading_sequence_files ├── README.rst ├── check_start_met.py ├── check_stops.py ├── count_fasta.py ├── count_fasta_adv.py ├── print_seq.py ├── record_lengths.py └── total_length.py ├── reading_writing_alignments ├── README.rst ├── count_gaps.py └── sort_gaps.py ├── tests ├── README.rst ├── test_consistency.py └── test_scripts.py ├── using_seqfeatures ├── README.rst ├── bases_in_genes.py ├── extract_cds.py ├── total_feature_lengths.py └── total_gene_lengths.py └── writing_sequence_files ├── README.rst ├── convert_gb_to_fasta.py ├── cut_final_star.py ├── cut_star_dangerous.py ├── filter_wanted_id.py ├── filter_wanted_id_in_order.py ├── length_filter.py └── length_filter_naive.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/peterjc/biopython_workshop/HEAD/.gitignore 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