├── .gitignore ├── DWT_IDWT ├── DWT_IDWT_Functions.py ├── DWT_IDWT_layer.py └── __init__.py ├── LICENSE ├── README.md ├── assets └── wdm.png ├── environment.yml ├── eval ├── activations │ └── activations.txt ├── eval_environment.yml ├── fid.py ├── model.py ├── models │ └── resnet.py ├── ms_ssim.py └── pretrained │ └── pretrained.txt ├── guided_diffusion ├── __init__.py ├── bratsloader.py ├── dist_util.py ├── gaussian_diffusion.py ├── lidcloader.py ├── logger.py ├── losses.py ├── nn.py ├── resample.py ├── respace.py ├── script_util.py ├── train_util.py ├── unet.py └── wunet.py ├── run.sh ├── scripts ├── generation_sample.py └── generation_train.py └── utils └── preproc_lidc-idri.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/.gitignore -------------------------------------------------------------------------------- /DWT_IDWT/DWT_IDWT_Functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/DWT_IDWT/DWT_IDWT_Functions.py -------------------------------------------------------------------------------- /DWT_IDWT/DWT_IDWT_layer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/DWT_IDWT/DWT_IDWT_layer.py -------------------------------------------------------------------------------- /DWT_IDWT/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/README.md -------------------------------------------------------------------------------- /assets/wdm.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/assets/wdm.png -------------------------------------------------------------------------------- /environment.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/environment.yml -------------------------------------------------------------------------------- /eval/activations/activations.txt: -------------------------------------------------------------------------------- 1 | Path to store intermediate activations for computing FID scores. 2 | -------------------------------------------------------------------------------- /eval/eval_environment.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/eval/eval_environment.yml -------------------------------------------------------------------------------- /eval/fid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/eval/fid.py -------------------------------------------------------------------------------- /eval/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/eval/model.py -------------------------------------------------------------------------------- /eval/models/resnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/eval/models/resnet.py -------------------------------------------------------------------------------- /eval/ms_ssim.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/eval/ms_ssim.py -------------------------------------------------------------------------------- /eval/pretrained/pretrained.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/eval/pretrained/pretrained.txt -------------------------------------------------------------------------------- /guided_diffusion/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/__init__.py -------------------------------------------------------------------------------- /guided_diffusion/bratsloader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/bratsloader.py -------------------------------------------------------------------------------- /guided_diffusion/dist_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/dist_util.py -------------------------------------------------------------------------------- /guided_diffusion/gaussian_diffusion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/gaussian_diffusion.py -------------------------------------------------------------------------------- /guided_diffusion/lidcloader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/lidcloader.py -------------------------------------------------------------------------------- /guided_diffusion/logger.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/logger.py -------------------------------------------------------------------------------- /guided_diffusion/losses.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/losses.py -------------------------------------------------------------------------------- /guided_diffusion/nn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/nn.py -------------------------------------------------------------------------------- /guided_diffusion/resample.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/resample.py -------------------------------------------------------------------------------- /guided_diffusion/respace.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/respace.py -------------------------------------------------------------------------------- /guided_diffusion/script_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/script_util.py -------------------------------------------------------------------------------- /guided_diffusion/train_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/train_util.py -------------------------------------------------------------------------------- /guided_diffusion/unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/unet.py -------------------------------------------------------------------------------- /guided_diffusion/wunet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/guided_diffusion/wunet.py -------------------------------------------------------------------------------- /run.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/run.sh -------------------------------------------------------------------------------- /scripts/generation_sample.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/scripts/generation_sample.py -------------------------------------------------------------------------------- /scripts/generation_train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/scripts/generation_train.py -------------------------------------------------------------------------------- /utils/preproc_lidc-idri.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pfriedri/wdm-3d/HEAD/utils/preproc_lidc-idri.py --------------------------------------------------------------------------------