├── .github └── workflows │ └── github-actions.yaml ├── LICENSE ├── MANIFEST.in ├── README.md ├── mob_suite ├── __init__.py ├── blast │ ├── __init__.py │ └── __init__.pyc ├── classes │ └── __init__.py ├── conda │ └── meta.yaml ├── config.json ├── constants.py ├── databases │ ├── __init__.py │ ├── host_range_literature_plasmidDB.csv │ ├── host_range_literature_plasmidDB.txt │ ├── host_range_ncbirefseq_plasmidDB.csv │ └── host_range_ncbirefseq_plasmidDB.txt ├── docker │ └── Dockerfile ├── example │ ├── AB040415.fasta │ ├── SRR3703080_illumina_unicycler.fasta │ └── assembly_no_biomarkers.fasta ├── mob_cluster.py ├── mob_init.py ├── mob_recon.py ├── mob_typer.py ├── singularity │ └── recipe.singularity ├── tests │ ├── TestData │ │ ├── AB011548.fasta │ │ ├── AB040415.fasta │ │ ├── AY603981.fasta │ │ ├── IncF │ │ │ ├── ET11_Ecoli_plasmid_529.fasta │ │ │ ├── ET4_Ecoli_plasmid_969.fasta │ │ │ └── ET5_Ecoli_plasmid_973.fasta │ │ ├── IncP │ │ │ └── KP975076.fasta │ │ ├── IncX │ │ │ └── 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