├── .Rbuildignore ├── .github ├── CODEOWNERS ├── ISSUE_TEMPLATE │ ├── 01_bug_report.yml │ ├── 02_feature_request.yml │ ├── 03_docs_update.yml │ └── 06_general_issue.yml ├── pull_request_template.md └── workflows │ ├── common.yml │ └── stale-bot.yaml ├── .gitignore ├── .lintr.R ├── .lycheeignore ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── admiraldev-package.R ├── admiraldev_environment.R ├── assertions.R ├── compat_friendly_type.R ├── dataset_vignette.R ├── demo_fun.R ├── dev_utilities.R ├── expect_dfs_equal.R ├── get.R ├── global.R ├── is.R ├── joins.R ├── lifecycle_admiral.R ├── process_set_values_to.R ├── quo.R ├── quote.R ├── roclet_rdx.R ├── tmp_vars.R ├── warnings.R └── what.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── admiraldev.Rproj ├── inst ├── WORDLIST ├── lintr │ └── linters.R ├── templates │ └── ad_adxx.R └── www │ └── style.css ├── man ├── add_suffix_to_vars.Rd ├── admiraldev-package.Rd ├── arg_name.Rd ├── assert_atomic_vector.Rd ├── assert_character_scalar.Rd ├── assert_character_vector.Rd ├── assert_data_frame.Rd ├── assert_date_var.Rd ├── assert_date_vector.Rd ├── assert_expr.Rd ├── assert_expr_list.Rd ├── assert_filter_cond.Rd ├── assert_function.Rd ├── assert_integer_scalar.Rd ├── assert_list_element.Rd ├── assert_list_of.Rd ├── assert_logical_scalar.Rd ├── assert_named.Rd ├── assert_numeric_vector.Rd ├── assert_one_to_one.Rd ├── assert_param_does_not_exist.Rd ├── assert_s3_class.Rd ├── assert_same_type.Rd ├── assert_symbol.Rd ├── assert_unit.Rd ├── assert_vars.Rd ├── assert_varval_list.Rd ├── backquote.Rd ├── capture_message.Rd ├── capture_output.Rd ├── contains_vars.Rd ├── convert_dtm_to_dtc.Rd ├── dataset_vignette.Rd ├── demo_fun.Rd ├── deprecate_inform.Rd ├── dquote.Rd ├── enumerate.Rd ├── execute_example.Rd ├── expect_dfs_equal.Rd ├── expr_c.Rd ├── extract_vars.Rd ├── figures │ ├── admiral_contribution_model.png │ ├── gsk_logo.png │ ├── lifecycle-deprecated.svg │ ├── logo.png │ └── roche_logo.png ├── filter_if.Rd ├── friendly_type_of.Rd ├── get_constant_vars.Rd ├── get_dataset.Rd ├── get_duplicates.Rd ├── get_new_tmp_var.Rd ├── get_param_tag.Rd ├── get_source_vars.Rd ├── grapes-notin-grapes.Rd ├── grapes-or-grapes.Rd ├── is_auto.Rd ├── is_order_vars.Rd ├── is_valid_dtc.Rd ├── joins.Rd ├── parse_code.Rd ├── process_set_values_to.Rd ├── rdx_roclet.Rd ├── remove_tmp_vars.Rd ├── replace_symbol_in_expr.Rd ├── replace_values_by_names.Rd ├── roxygen │ ├── meta.R │ └── rdx_meta.R ├── squote.Rd ├── suppress_warning.Rd ├── transform_examplesx.Rd ├── transform_param.Rd ├── valid_time_units.Rd ├── vars2chr.Rd ├── warn_if_incomplete_dtc.Rd ├── warn_if_inconsistent_list.Rd ├── warn_if_invalid_dtc.Rd ├── warn_if_vars_exist.Rd └── what_is_it.Rd ├── pkgdown └── favicon │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ └── favicon.ico ├── staged_dependencies.yaml ├── tests ├── testthat.R └── testthat │ ├── _snaps │ ├── assertions.md │ ├── dev_utilities.md │ ├── lifecycle_admiral.md │ ├── process_set_values_to.md │ ├── roclet_rdx │ │ ├── test_class.Rd │ │ └── test_fun.Rd │ ├── tmp_vars.md │ └── warnings.md │ ├── fixtures │ ├── test_class.R │ └── test_fun.R │ ├── test-assertions.R │ ├── test-compat_friendly_type.R │ ├── test-dataset_vignette.R │ ├── test-dev_utilities.R │ ├── test-get.R │ ├── test-is.R │ ├── test-lifecycle_admiral.R │ ├── test-process_set_values_to.R │ ├── test-quo.R │ ├── test-quote.R │ ├── test-roclet_rdx.R │ ├── test-test_helpers.R │ ├── test-tmp_vars.R │ ├── test-warnings.R │ └── test-what.R └── vignettes ├── .gitignore ├── admiraldev.Rmd ├── custom_roclet_example.png ├── dummy_issue.png ├── git_usage.Rmd ├── github_committ.png ├── github_conflicts.png ├── github_create_pr.png ├── github_done.png ├── github_feature_branch.png ├── github_linked_issues.png ├── github_linked_issues_dark.png ├── github_sprint_done.png ├── package_extensions.Rmd ├── pr_review_actions.png ├── pr_review_checkbox.png ├── pr_review_checklist.png ├── pr_review_guidance.Rmd ├── programming_strategy.Rmd ├── project_board.png ├── rcmd_issues.Rmd ├── release_strategy.Rmd ├── test_data_guidance.Rmd ├── unit_test_format_tests.png ├── unit_test_guidance.Rmd ├── unit_test_guidance.png ├── unit_test_toc.png ├── writing_custom_examples.Rmd └── writing_vignettes.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/CODEOWNERS: -------------------------------------------------------------------------------- 1 | .github/workflows/* @cicdguy 2 | -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/01_bug_report.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/.github/ISSUE_TEMPLATE/01_bug_report.yml -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/02_feature_request.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/.github/ISSUE_TEMPLATE/02_feature_request.yml -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/03_docs_update.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/.github/ISSUE_TEMPLATE/03_docs_update.yml -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/06_general_issue.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/.github/ISSUE_TEMPLATE/06_general_issue.yml -------------------------------------------------------------------------------- /.github/pull_request_template.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/.github/pull_request_template.md -------------------------------------------------------------------------------- /.github/workflows/common.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/.github/workflows/common.yml -------------------------------------------------------------------------------- /.github/workflows/stale-bot.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/.github/workflows/stale-bot.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/.gitignore -------------------------------------------------------------------------------- /.lintr.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/.lintr.R -------------------------------------------------------------------------------- /.lycheeignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/.lycheeignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/LICENSE.md -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/NAMESPACE -------------------------------------------------------------------------------- /NEWS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/NEWS.md -------------------------------------------------------------------------------- /R/admiraldev-package.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/admiraldev-package.R -------------------------------------------------------------------------------- /R/admiraldev_environment.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/admiraldev_environment.R -------------------------------------------------------------------------------- /R/assertions.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/assertions.R -------------------------------------------------------------------------------- /R/compat_friendly_type.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/compat_friendly_type.R -------------------------------------------------------------------------------- /R/dataset_vignette.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/dataset_vignette.R -------------------------------------------------------------------------------- /R/demo_fun.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/demo_fun.R -------------------------------------------------------------------------------- /R/dev_utilities.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/dev_utilities.R -------------------------------------------------------------------------------- /R/expect_dfs_equal.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/expect_dfs_equal.R -------------------------------------------------------------------------------- /R/get.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/get.R -------------------------------------------------------------------------------- /R/global.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/global.R -------------------------------------------------------------------------------- /R/is.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/is.R -------------------------------------------------------------------------------- /R/joins.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/joins.R -------------------------------------------------------------------------------- /R/lifecycle_admiral.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/lifecycle_admiral.R -------------------------------------------------------------------------------- /R/process_set_values_to.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/process_set_values_to.R -------------------------------------------------------------------------------- /R/quo.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/quo.R -------------------------------------------------------------------------------- /R/quote.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/quote.R -------------------------------------------------------------------------------- /R/roclet_rdx.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/roclet_rdx.R -------------------------------------------------------------------------------- /R/tmp_vars.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/tmp_vars.R -------------------------------------------------------------------------------- /R/warnings.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/warnings.R -------------------------------------------------------------------------------- /R/what.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/R/what.R -------------------------------------------------------------------------------- /README.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/README.Rmd -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/README.md -------------------------------------------------------------------------------- /_pkgdown.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/_pkgdown.yml -------------------------------------------------------------------------------- /admiraldev.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/admiraldev.Rproj -------------------------------------------------------------------------------- /inst/WORDLIST: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/inst/WORDLIST -------------------------------------------------------------------------------- /inst/lintr/linters.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/inst/lintr/linters.R -------------------------------------------------------------------------------- /inst/templates/ad_adxx.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/inst/templates/ad_adxx.R -------------------------------------------------------------------------------- /inst/www/style.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/inst/www/style.css -------------------------------------------------------------------------------- /man/add_suffix_to_vars.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/add_suffix_to_vars.Rd -------------------------------------------------------------------------------- /man/admiraldev-package.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/admiraldev-package.Rd -------------------------------------------------------------------------------- /man/arg_name.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/arg_name.Rd -------------------------------------------------------------------------------- /man/assert_atomic_vector.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_atomic_vector.Rd -------------------------------------------------------------------------------- /man/assert_character_scalar.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_character_scalar.Rd -------------------------------------------------------------------------------- /man/assert_character_vector.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_character_vector.Rd -------------------------------------------------------------------------------- /man/assert_data_frame.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_data_frame.Rd -------------------------------------------------------------------------------- /man/assert_date_var.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_date_var.Rd -------------------------------------------------------------------------------- /man/assert_date_vector.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_date_vector.Rd -------------------------------------------------------------------------------- /man/assert_expr.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_expr.Rd -------------------------------------------------------------------------------- /man/assert_expr_list.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_expr_list.Rd -------------------------------------------------------------------------------- /man/assert_filter_cond.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_filter_cond.Rd -------------------------------------------------------------------------------- /man/assert_function.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_function.Rd -------------------------------------------------------------------------------- /man/assert_integer_scalar.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_integer_scalar.Rd -------------------------------------------------------------------------------- /man/assert_list_element.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_list_element.Rd -------------------------------------------------------------------------------- /man/assert_list_of.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_list_of.Rd -------------------------------------------------------------------------------- /man/assert_logical_scalar.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_logical_scalar.Rd -------------------------------------------------------------------------------- /man/assert_named.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_named.Rd -------------------------------------------------------------------------------- /man/assert_numeric_vector.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_numeric_vector.Rd -------------------------------------------------------------------------------- /man/assert_one_to_one.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_one_to_one.Rd -------------------------------------------------------------------------------- /man/assert_param_does_not_exist.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_param_does_not_exist.Rd -------------------------------------------------------------------------------- /man/assert_s3_class.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_s3_class.Rd -------------------------------------------------------------------------------- /man/assert_same_type.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_same_type.Rd -------------------------------------------------------------------------------- /man/assert_symbol.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_symbol.Rd -------------------------------------------------------------------------------- /man/assert_unit.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_unit.Rd -------------------------------------------------------------------------------- /man/assert_vars.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_vars.Rd -------------------------------------------------------------------------------- /man/assert_varval_list.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/assert_varval_list.Rd -------------------------------------------------------------------------------- /man/backquote.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/backquote.Rd -------------------------------------------------------------------------------- /man/capture_message.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/capture_message.Rd -------------------------------------------------------------------------------- /man/capture_output.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/capture_output.Rd -------------------------------------------------------------------------------- /man/contains_vars.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/contains_vars.Rd -------------------------------------------------------------------------------- /man/convert_dtm_to_dtc.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/convert_dtm_to_dtc.Rd -------------------------------------------------------------------------------- /man/dataset_vignette.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/dataset_vignette.Rd -------------------------------------------------------------------------------- /man/demo_fun.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/demo_fun.Rd -------------------------------------------------------------------------------- /man/deprecate_inform.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/deprecate_inform.Rd -------------------------------------------------------------------------------- /man/dquote.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/dquote.Rd -------------------------------------------------------------------------------- /man/enumerate.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/enumerate.Rd -------------------------------------------------------------------------------- /man/execute_example.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/execute_example.Rd -------------------------------------------------------------------------------- /man/expect_dfs_equal.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/expect_dfs_equal.Rd -------------------------------------------------------------------------------- /man/expr_c.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/expr_c.Rd -------------------------------------------------------------------------------- /man/extract_vars.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/extract_vars.Rd -------------------------------------------------------------------------------- /man/figures/admiral_contribution_model.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/figures/admiral_contribution_model.png -------------------------------------------------------------------------------- /man/figures/gsk_logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/figures/gsk_logo.png -------------------------------------------------------------------------------- /man/figures/lifecycle-deprecated.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/figures/lifecycle-deprecated.svg -------------------------------------------------------------------------------- /man/figures/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/figures/logo.png -------------------------------------------------------------------------------- /man/figures/roche_logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/figures/roche_logo.png -------------------------------------------------------------------------------- /man/filter_if.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/filter_if.Rd -------------------------------------------------------------------------------- /man/friendly_type_of.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/friendly_type_of.Rd -------------------------------------------------------------------------------- /man/get_constant_vars.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/get_constant_vars.Rd -------------------------------------------------------------------------------- /man/get_dataset.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/get_dataset.Rd -------------------------------------------------------------------------------- /man/get_duplicates.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/get_duplicates.Rd -------------------------------------------------------------------------------- /man/get_new_tmp_var.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/get_new_tmp_var.Rd -------------------------------------------------------------------------------- /man/get_param_tag.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/get_param_tag.Rd -------------------------------------------------------------------------------- /man/get_source_vars.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/get_source_vars.Rd -------------------------------------------------------------------------------- /man/grapes-notin-grapes.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/grapes-notin-grapes.Rd -------------------------------------------------------------------------------- /man/grapes-or-grapes.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/grapes-or-grapes.Rd -------------------------------------------------------------------------------- /man/is_auto.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/is_auto.Rd -------------------------------------------------------------------------------- /man/is_order_vars.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/is_order_vars.Rd -------------------------------------------------------------------------------- /man/is_valid_dtc.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/is_valid_dtc.Rd -------------------------------------------------------------------------------- /man/joins.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/joins.Rd -------------------------------------------------------------------------------- /man/parse_code.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/parse_code.Rd -------------------------------------------------------------------------------- /man/process_set_values_to.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/process_set_values_to.Rd -------------------------------------------------------------------------------- /man/rdx_roclet.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/rdx_roclet.Rd -------------------------------------------------------------------------------- /man/remove_tmp_vars.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/remove_tmp_vars.Rd -------------------------------------------------------------------------------- /man/replace_symbol_in_expr.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/replace_symbol_in_expr.Rd -------------------------------------------------------------------------------- /man/replace_values_by_names.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/replace_values_by_names.Rd -------------------------------------------------------------------------------- /man/roxygen/meta.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/roxygen/meta.R -------------------------------------------------------------------------------- /man/roxygen/rdx_meta.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/roxygen/rdx_meta.R -------------------------------------------------------------------------------- /man/squote.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/squote.Rd -------------------------------------------------------------------------------- /man/suppress_warning.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/suppress_warning.Rd -------------------------------------------------------------------------------- /man/transform_examplesx.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/transform_examplesx.Rd -------------------------------------------------------------------------------- /man/transform_param.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/transform_param.Rd -------------------------------------------------------------------------------- /man/valid_time_units.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/valid_time_units.Rd -------------------------------------------------------------------------------- /man/vars2chr.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/vars2chr.Rd -------------------------------------------------------------------------------- /man/warn_if_incomplete_dtc.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/warn_if_incomplete_dtc.Rd -------------------------------------------------------------------------------- /man/warn_if_inconsistent_list.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/warn_if_inconsistent_list.Rd -------------------------------------------------------------------------------- /man/warn_if_invalid_dtc.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/warn_if_invalid_dtc.Rd -------------------------------------------------------------------------------- /man/warn_if_vars_exist.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/warn_if_vars_exist.Rd -------------------------------------------------------------------------------- /man/what_is_it.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/man/what_is_it.Rd -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-120x120.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/pkgdown/favicon/apple-touch-icon-120x120.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-152x152.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/pkgdown/favicon/apple-touch-icon-152x152.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-180x180.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/pkgdown/favicon/apple-touch-icon-180x180.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-60x60.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/pkgdown/favicon/apple-touch-icon-60x60.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-76x76.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/pkgdown/favicon/apple-touch-icon-76x76.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/pkgdown/favicon/apple-touch-icon.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon-16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/pkgdown/favicon/favicon-16x16.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon-32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/pkgdown/favicon/favicon-32x32.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/pkgdown/favicon/favicon.ico -------------------------------------------------------------------------------- /staged_dependencies.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/staged_dependencies.yaml -------------------------------------------------------------------------------- /tests/testthat.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat.R -------------------------------------------------------------------------------- /tests/testthat/_snaps/assertions.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/_snaps/assertions.md -------------------------------------------------------------------------------- /tests/testthat/_snaps/dev_utilities.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/_snaps/dev_utilities.md -------------------------------------------------------------------------------- /tests/testthat/_snaps/lifecycle_admiral.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/_snaps/lifecycle_admiral.md -------------------------------------------------------------------------------- /tests/testthat/_snaps/process_set_values_to.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/_snaps/process_set_values_to.md -------------------------------------------------------------------------------- /tests/testthat/_snaps/roclet_rdx/test_class.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/_snaps/roclet_rdx/test_class.Rd -------------------------------------------------------------------------------- /tests/testthat/_snaps/roclet_rdx/test_fun.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/_snaps/roclet_rdx/test_fun.Rd -------------------------------------------------------------------------------- /tests/testthat/_snaps/tmp_vars.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/_snaps/tmp_vars.md -------------------------------------------------------------------------------- /tests/testthat/_snaps/warnings.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/_snaps/warnings.md -------------------------------------------------------------------------------- /tests/testthat/fixtures/test_class.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/fixtures/test_class.R -------------------------------------------------------------------------------- /tests/testthat/fixtures/test_fun.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/fixtures/test_fun.R -------------------------------------------------------------------------------- /tests/testthat/test-assertions.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-assertions.R -------------------------------------------------------------------------------- /tests/testthat/test-compat_friendly_type.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-compat_friendly_type.R -------------------------------------------------------------------------------- /tests/testthat/test-dataset_vignette.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-dataset_vignette.R -------------------------------------------------------------------------------- /tests/testthat/test-dev_utilities.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-dev_utilities.R -------------------------------------------------------------------------------- /tests/testthat/test-get.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-get.R -------------------------------------------------------------------------------- /tests/testthat/test-is.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-is.R -------------------------------------------------------------------------------- /tests/testthat/test-lifecycle_admiral.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-lifecycle_admiral.R -------------------------------------------------------------------------------- /tests/testthat/test-process_set_values_to.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-process_set_values_to.R -------------------------------------------------------------------------------- /tests/testthat/test-quo.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-quo.R -------------------------------------------------------------------------------- /tests/testthat/test-quote.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-quote.R -------------------------------------------------------------------------------- /tests/testthat/test-roclet_rdx.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-roclet_rdx.R -------------------------------------------------------------------------------- /tests/testthat/test-test_helpers.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-test_helpers.R -------------------------------------------------------------------------------- /tests/testthat/test-tmp_vars.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-tmp_vars.R -------------------------------------------------------------------------------- /tests/testthat/test-warnings.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-warnings.R -------------------------------------------------------------------------------- /tests/testthat/test-what.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/tests/testthat/test-what.R -------------------------------------------------------------------------------- /vignettes/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | *.R 3 | -------------------------------------------------------------------------------- /vignettes/admiraldev.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/admiraldev.Rmd -------------------------------------------------------------------------------- /vignettes/custom_roclet_example.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/custom_roclet_example.png -------------------------------------------------------------------------------- /vignettes/dummy_issue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/dummy_issue.png -------------------------------------------------------------------------------- /vignettes/git_usage.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/git_usage.Rmd -------------------------------------------------------------------------------- /vignettes/github_committ.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/github_committ.png -------------------------------------------------------------------------------- /vignettes/github_conflicts.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/github_conflicts.png -------------------------------------------------------------------------------- /vignettes/github_create_pr.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/github_create_pr.png -------------------------------------------------------------------------------- /vignettes/github_done.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/github_done.png -------------------------------------------------------------------------------- /vignettes/github_feature_branch.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/github_feature_branch.png -------------------------------------------------------------------------------- /vignettes/github_linked_issues.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/github_linked_issues.png -------------------------------------------------------------------------------- /vignettes/github_linked_issues_dark.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/github_linked_issues_dark.png -------------------------------------------------------------------------------- /vignettes/github_sprint_done.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/github_sprint_done.png -------------------------------------------------------------------------------- /vignettes/package_extensions.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/package_extensions.Rmd -------------------------------------------------------------------------------- /vignettes/pr_review_actions.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/pr_review_actions.png -------------------------------------------------------------------------------- /vignettes/pr_review_checkbox.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/pr_review_checkbox.png -------------------------------------------------------------------------------- /vignettes/pr_review_checklist.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/pr_review_checklist.png -------------------------------------------------------------------------------- /vignettes/pr_review_guidance.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/pr_review_guidance.Rmd -------------------------------------------------------------------------------- /vignettes/programming_strategy.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/programming_strategy.Rmd -------------------------------------------------------------------------------- /vignettes/project_board.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/project_board.png -------------------------------------------------------------------------------- /vignettes/rcmd_issues.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/rcmd_issues.Rmd -------------------------------------------------------------------------------- /vignettes/release_strategy.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/release_strategy.Rmd -------------------------------------------------------------------------------- /vignettes/test_data_guidance.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/test_data_guidance.Rmd -------------------------------------------------------------------------------- /vignettes/unit_test_format_tests.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/unit_test_format_tests.png -------------------------------------------------------------------------------- /vignettes/unit_test_guidance.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/unit_test_guidance.Rmd -------------------------------------------------------------------------------- /vignettes/unit_test_guidance.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/unit_test_guidance.png -------------------------------------------------------------------------------- /vignettes/unit_test_toc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/unit_test_toc.png -------------------------------------------------------------------------------- /vignettes/writing_custom_examples.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/writing_custom_examples.Rmd -------------------------------------------------------------------------------- /vignettes/writing_vignettes.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pharmaverse/admiraldev/HEAD/vignettes/writing_vignettes.Rmd --------------------------------------------------------------------------------