├── .Rbuildignore ├── .devcontainer ├── 4.1 │ └── devcontainer.json ├── 4.2 │ └── devcontainer.json ├── devcontainer.json ├── postCreateCommand.sh └── rstudio-prefs.json ├── .github ├── CODEOWNERS ├── ISSUE_TEMPLATE │ ├── 01_bug_report.yml │ ├── 02_feature_request.yml │ ├── 03_docs_update.yml │ └── 06_general_issue.yml ├── pull_request_template.md └── workflows │ └── common.yml ├── .gitignore ├── .lintr.R ├── .lycheeignore ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── ae.R ├── ae_ophtha.R ├── ag_neuro.R ├── ce_vaccine.R ├── cm.R ├── dm.R ├── dm_metabolic.R ├── dm_neuro.R ├── dm_peds.R ├── dm_vaccine.R ├── ds.R ├── eg.R ├── ex.R ├── ex_ophtha.R ├── ex_vaccine.R ├── face_vaccine.R ├── get_terms.R ├── is_vaccine.R ├── lb.R ├── lb_metabolic.R ├── mh.R ├── nv_neuro.R ├── oe_ophtha.R ├── pc.R ├── pharmaversesdtm-package.R ├── pp.R ├── qs_metabolic.R ├── qs_ophtha.R ├── rs_onco.R ├── rs_onco_ca125.R ├── rs_onco_imwg.R ├── rs_onco_irecist.R ├── rs_onco_pcwg3.R ├── rs_onco_recist.R ├── sc_ophtha.R ├── sdg_db.R ├── smq_db.R ├── suppae.R ├── suppce_vaccine.R ├── suppdm.R ├── suppdm_vaccine.R ├── suppds.R ├── suppex_vaccine.R ├── suppface_vaccine.R ├── suppis_vaccine.R ├── suppnv_neuro.R ├── supprs_onco_ca125.R ├── supprs_onco_imwg.R ├── supptr_onco.R ├── sv.R ├── tr_onco.R ├── tr_onco_recist.R ├── ts.R ├── tu_onco.R ├── tu_onco_recist.R ├── vs.R ├── vs_metabolic.R ├── vs_peds.R └── vs_vaccine.R ├── README.md ├── _pkgdown.yml ├── cran-comments.md ├── data-raw ├── README.md ├── ae.R ├── ae_ophtha.R ├── ag_neuro.R ├── batch_run.sh ├── ce_vaccine.R ├── cm.R ├── create_sdtms_data.R ├── dm.R ├── dm_metabolic.R ├── dm_neuro.R ├── dm_peds.R ├── dm_vaccine.R ├── ds.R ├── eg.R ├── ex.R ├── ex_ophtha.R ├── ex_vaccine.R ├── face_vaccine.R ├── is_vaccine.R ├── lb.R ├── lb_metabolic.R ├── mh.R ├── nv_neuro.R ├── oe_ophtha.R ├── pc.R ├── pp.R ├── qs_metabolic.R ├── qs_ophtha.R ├── query_databases.R ├── rs_onco.R ├── rs_onco_irecist.R ├── rs_onco_pcwg3.R ├── rs_onco_recist.R ├── rs_supprs_onco_ca125.R ├── rs_supprs_onco_imwg.R ├── sc_ophtha.R ├── suppce_vaccine.R ├── suppdm_vaccine.R ├── suppex_vaccine.R ├── suppface_vaccine.R ├── suppis_vaccine.R ├── suppnv_neuro.R ├── sv.R ├── tr_onco.R ├── tr_onco_recist.R ├── ts.R ├── tu_onco.R ├── tu_onco_recist.R ├── vs.R ├── vs_metabolic.R ├── vs_peds.R └── vs_vaccine.R ├── data ├── ae.rda ├── ae_ophtha.rda ├── ag_neuro.rda ├── ce_vaccine.rda ├── cm.rda ├── dm.rda ├── dm_metabolic.rda ├── dm_neuro.rda ├── dm_peds.rda ├── dm_vaccine.rda ├── ds.rda ├── eg.rda ├── ex.rda ├── ex_ophtha.rda ├── ex_vaccine.rda ├── face_vaccine.rda ├── is_vaccine.rda ├── lb.rda ├── lb_metabolic.rda ├── mh.rda ├── nv_neuro.rda ├── oe_ophtha.rda ├── pc.rda ├── pp.rda ├── qs_metabolic.rda ├── qs_ophtha.rda ├── rs_onco.rda ├── rs_onco_ca125.rda ├── rs_onco_imwg.rda ├── rs_onco_irecist.rda ├── rs_onco_pcwg3.rda ├── rs_onco_recist.rda ├── sc_ophtha.rda ├── sdg_db.rda ├── smq_db.rda ├── suppae.rda ├── suppce_vaccine.rda ├── suppdm.rda ├── suppdm_vaccine.rda ├── suppds.rda ├── suppex_vaccine.rda ├── suppface_vaccine.rda ├── suppis_vaccine.rda ├── suppnv_neuro.rda ├── supprs_onco_ca125.rda ├── supprs_onco_imwg.rda ├── supptr_onco.rda ├── sv.rda ├── tr_onco.rda ├── tr_onco_recist.rda ├── ts.rda ├── tu_onco.rda ├── tu_onco_recist.rda ├── vs.rda ├── vs_metabolic.rda ├── vs_peds.rda └── vs_vaccine.rda ├── inst ├── WORDLIST └── extdata │ └── sdtms-specs.json ├── man ├── ae.Rd ├── ae_ophtha.Rd ├── ag_neuro.Rd ├── ce_vaccine.Rd ├── cm.Rd ├── dm.Rd ├── dm_metabolic.Rd ├── dm_neuro.Rd ├── dm_peds.Rd ├── dm_vaccine.Rd ├── ds.Rd ├── eg.Rd ├── ex.Rd ├── ex_ophtha.Rd ├── ex_vaccine.Rd ├── face_vaccine.Rd ├── figures │ ├── cytel_logo.png │ ├── gsk_logo.png │ ├── logo.png │ └── roche_logo.png ├── get_terms.Rd ├── is_vaccine.Rd ├── lb.Rd ├── lb_metabolic.Rd ├── mh.Rd ├── nv_neuro.Rd ├── oe_ophtha.Rd ├── pc.Rd ├── pharmaversesdtm-package.Rd ├── pp.Rd ├── qs_metabolic.Rd ├── qs_ophtha.Rd ├── rs_onco.Rd ├── rs_onco_ca125.Rd ├── rs_onco_imwg.Rd ├── rs_onco_irecist.Rd ├── rs_onco_pcwg3.Rd ├── rs_onco_recist.Rd ├── sc_ophtha.Rd ├── sdg_db.Rd ├── smq_db.Rd ├── suppae.Rd ├── suppce_vaccine.Rd ├── suppdm.Rd ├── suppdm_vaccine.Rd ├── suppds.Rd ├── suppex_vaccine.Rd ├── suppface_vaccine.Rd ├── suppis_vaccine.Rd ├── suppnv_neuro.Rd ├── supprs_onco_ca125.Rd ├── supprs_onco_imwg.Rd ├── supptr_onco.Rd ├── sv.Rd ├── tr_onco.Rd ├── tr_onco_recist.Rd ├── ts.Rd ├── tu_onco.Rd ├── tu_onco_recist.Rd ├── vs.Rd ├── vs_metabolic.Rd ├── vs_peds.Rd └── vs_vaccine.Rd ├── pharmaversesdtm.Rproj ├── pkgdown └── favicon │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ ├── favicon-96x96.png │ ├── favicon.ico │ ├── favicon.svg │ ├── site.webmanifest │ ├── web-app-manifest-192x192.png │ └── web-app-manifest-512x512.png └── 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