├── .gitmodules ├── LICENSE ├── Makefile ├── README.md ├── bin └── sentry.txt ├── pipelines ├── Snakefile ├── config.json └── config.sh ├── scripts └── results_to_fasta.pl └── src ├── bam_filt.c ├── bam_filt.h ├── count_motif.c ├── count_motif.h ├── dna.c ├── dna.h ├── matlock.c ├── matrix.c ├── matrix.h ├── read_count.c ├── read_count.h ├── run_irm.c ├── run_irm.h ├── string_parser.c └── string_parser.h /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/phasegenomics/matlock/HEAD/.gitmodules -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/phasegenomics/matlock/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- 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