├── .gitignore ├── CCTBX_Demo.ipynb ├── CCTBX_Quickstart.ipynb ├── GNN_examples └── GNN_Demo_1.ipynb ├── LICENSE ├── README.md ├── Start_cctbx.ipynb ├── __init__.py ├── alphafold2 ├── AlphaFold2.ipynb ├── AlphaFoldPhenixGUI.ipynb ├── AlphaFoldWithDensityMap.ipynb ├── AlphaFold_testing.ipynb ├── Latest.tgz ├── README_programming_notes.dat ├── Standard.tgz ├── __init__.py ├── alphafold_utils.py ├── colabfold.py ├── install_updates.py ├── phenix_alphafold_utils.py ├── phenix_colab_utils.py ├── run_alphafold_with_density_map.py └── run_mmseqs2.py └── christopher_cctbx └── CCTBX_Demo.ipynb /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/phenix-project/Colabs/HEAD/.gitignore -------------------------------------------------------------------------------- /CCTBX_Demo.ipynb: -------------------------------------------------------------------------------- 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