├── nrepl-clojure
    ├── doc
    │   └── releases.md
    ├── project.clj
    └── src
    │   └── protege
    │       ├── model.clj
    │       ├── nrepl.clj
    │       └── dialog.clj
├── .gitignore
├── nrepl-plugin
    ├── plugin.xml
    ├── src
    │   └── main
    │   │   └── java
    │   │       └── uk
    │   │           └── org
    │   │               └── russet
    │   │                   └── protege
    │   │                       └── NreplMenu.java
    └── pom.xml
└── README.md


/nrepl-clojure/doc/releases.md:
--------------------------------------------------------------------------------
1 | # Releases
2 | 
3 | # 1.0
4 | 
5 | First full release.
6 | 


--------------------------------------------------------------------------------
/.gitignore:
--------------------------------------------------------------------------------
 1 | /nrepl-clojure/.lein-repl-history
 2 | /nrepl-clojure/target
 3 | /nrepl-plugin/build
 4 | /nrepl-plugin/target
 5 | /nrepl-clojure/pom.xml
 6 | /nrepl-clojure/src/protege/temp.clj
 7 | /nrepl-clojure/test/nrepl_clojure/core_test.clj
 8 | /nrepl-plugin/build.properties
 9 | /nrepl-plugin/lib/nrepl-clojure.jar
10 | /nrepl-plugin/src/.svn/all-wcprops
11 | /nrepl-plugin/src/.svn/entries
12 | /nrepl-clojure/.lein-failures
13 | /nrepl-clojure/pom.xml.asc
14 | 


--------------------------------------------------------------------------------
/nrepl-plugin/plugin.xml:
--------------------------------------------------------------------------------
 1 | <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 2 | <?eclipse version="3.0"?>
 3 | 
 4 | <plugin>
 5 |   
 6 |   <!--extension id="toolmenu1" 
 7 |              point="org.protege.editor.core.application.EditorKitMenuAction">
 8 |     <name value="Example Menu 1"/>
 9 |     <path value="org.protege.editor.owl.menu.tools/SlotG-A"/>
10 |     <toolTip value="This menu appears in the tools menu"/>
11 |     <class value="org.protege.example.menu.ToolsMenu1"/>
12 |     <editorKitId value="any"/>
13 |   </extension-->  
14 |   
15 |   <extension id="nrepl-menu" 
16 |                point="org.protege.editor.core.application.EditorKitMenuAction">
17 |         <name value="NREPL"/>
18 |         <path value="org.protege.editor.owl.menu.tools/SlotG-A"/>
19 |         <toolTip value="This menu appears in the tools menu"/>
20 |         <class value="uk.org.russet.protege.NreplMenu"/>
21 |         <editorKitId value="any"/>
22 |   </extension>
23 | 
24 | </plugin>
25 | 


--------------------------------------------------------------------------------
/nrepl-clojure/project.clj:
--------------------------------------------------------------------------------
 1 | (defproject uk.org.russet/nrepl-clojure "1.1.0-SNAPSHOT"
 2 |   :description "Launch a nrepl client inside protege"
 3 |   :license {:name "LGPL"
 4 |             :url "http://www.gnu.org/licenses/lgpl-3.0.txt"
 5 |             :distribution :repo}
 6 |   :scm {:url "https://github.com/phillord/protege-nrepl.git"
 7 |         :name "git"}
 8 |   :url "https://github.com/phillord/protege-nrepl"
 9 |   :dependencies [[org.clojure/clojure "1.6.0"]
10 |                  [org.clojure/tools.nrepl "0.2.3"]
11 |                  [edu.stanford.protege/org.protege.editor.core.application
12 |                   "5.0.0-beta-16-SNAPSHOT"]
13 |                  [com.cemerick/pomegranate "0.3.0"]]
14 |   ;; this is a hack workaround to
15 |   ;; https://github.com/technomancy/leiningen/issues/1569 which otherwise adds
16 |   ;; nrepl tools as a test dependency in the pom (which means it doesn't get
17 |   ;; included in protege-nrepl.
18 |   ;; This bug has been fixed in 2.4.3
19 |   ;;:profiles {:base {:dependencies ^:replace []}}
20 |   )
21 | 


--------------------------------------------------------------------------------
/nrepl-clojure/src/protege/model.clj:
--------------------------------------------------------------------------------
 1 | ;; The contents of this file are subject to the LGPL License, Version 3.0.
 2 | ;;
 3 | ;; Copyright (C) 2013, Phillip Lord, Newcastle University
 4 | ;;
 5 | ;; This program is free software: you can redistribute it and/or modify it
 6 | ;; under the terms of the GNU Lesser General Public License as published by
 7 | ;; the Free Software Foundation, either version 3 of the License, or (at your
 8 | ;; option) any later version.
 9 | ;;
10 | ;; This program is distributed in the hope that it will be useful, but WITHOUT
11 | ;; ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
12 | ;; FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
13 | ;; for more details.
14 | ;;
15 | ;; You should have received a copy of the GNU Lesser General Public License
16 | ;; along with this program. If not, see http://www.gnu.org/licenses/.
17 | 
18 | (ns protege.model)
19 | 
20 | (def ^{:dynamic true
21 |        :doc "The OWLModelManager for the Protege Instance from which the REPL
22 | is launched."}
23 |   *owl-model-manager* nil)
24 | 
25 | (def ^{:dynamic true
26 |        :doc "The OWLEditorKit for the Protege Instance from which the REPL is
27 | launched."}
28 |   *owl-editor-kit* nil)
29 | 
30 | (def ^{:dynamic true
31 |        :doc "The OWLWorkspace for the Protege Instance from which the REPL is
32 | launched."}
33 |   *owl-work-space* nil)
34 | 
35 | (def auto-connect-on-default (ref false))
36 | 
37 | (defn active-ontology
38 |   ([]
39 |      (.getActiveOntology *owl-model-manager*))
40 |   ([o]
41 |      (.setActiveOntology *owl-model-manager* o)))
42 | 
43 | 
44 | (defn selected-object
45 |   ([workspace]
46 |      (-> workspace
47 |          .getOWLSelectionModel
48 |          .getSelectedObject))
49 |   ([workspace entity]
50 |      (-> workspace
51 |          .getOWLSelectionModel
52 |          (.setSelectedObject entity))))
53 | 


--------------------------------------------------------------------------------
/nrepl-clojure/src/protege/nrepl.clj:
--------------------------------------------------------------------------------
 1 | (ns protege.nrepl
 2 |   (:require [clojure.tools.nrepl.server]
 3 |             [clojure.java.io]
 4 |             [protege.model]))
 5 | 
 6 | 
 7 | (def nrepl-handler (ref clojure.tools.nrepl.server/default-handler))
 8 | 
 9 | ;; borrowed from lein
10 | (defn getenv
11 |   "Wrap System/getenv for testing purposes."
12 |   [name]
13 |   (System/getenv name))
14 | 
15 | (defn protege-nrepl-home
16 |   "Return full path to the user's protege home directory."
17 |   []
18 |   (let [protege-nrepl-home (getenv "PROTEGE_NREPL_HOME")
19 |         protege-nrepl-home (or (and protege-nrepl-home (clojure.java.io/file protege-nrepl-home))
20 |                       (clojure.java.io/file (System/getProperty "user.home") ".protege-nrepl"))]
21 |     (.getAbsolutePath (doto protege-nrepl-home .mkdirs))))
22 | 
23 | (def init
24 |   "Load the user's ~/.protege-nrepl/init.clj file, if present."
25 |   (memoize (fn []
26 |              (let [init-file (clojure.java.io/file (protege-nrepl-home) "init.clj")]
27 |                (when (.exists init-file)
28 |                  (try (load-file (.getAbsolutePath init-file))
29 |                       (catch Exception e
30 |                         (.printStackTrace e))))))))
31 | 
32 | ;; hook system -- identical to tawny.util -- ah well!
33 | (defn make-hook
34 |   "Make a hook."
35 |   []
36 |   (atom []))
37 | 
38 | (defn add-hook
39 |   "Add func to hook."
40 |   [hook func]
41 |   (do
42 |     (when-not
43 |         (some #{func} @hook)
44 |       (swap! hook conj func))
45 |     @hook))
46 | 
47 | (defn remove-hook
48 |   "Remove func from hook."
49 |   [hook func]
50 |   (swap! hook
51 |          (partial
52 |           remove #{func})))
53 | 
54 | (defn clear-hook
55 |   "Empty the hook."
56 |   [hook]
57 |   (reset! hook []))
58 | 
59 | (defn run-hook
60 |   "Run the hook with optional arguments. Hook functions are run in the order
61 | that they were added."
62 |   ([hook]
63 |      (doseq [func @hook] (func)))
64 |   ([hook & rest]
65 |      (doseq [func @hook] (apply func rest))))
66 | 
67 | 
68 | (def start-server-hook (make-hook))
69 | 
70 | (def servers (atom {}))
71 | 
72 | 
73 | (defn start-server
74 |   ([editorkit port]
75 |      (binding [protege.model/*owl-editor-kit* editorkit
76 |                protege.model/*owl-work-space*
77 |                (.getOWLWorkspace editorkit)
78 |                protege.model/*owl-model-manager*
79 |                (.getOWLModelManager editorkit)]
80 |        (run-hook start-server-hook)
81 |        (let [server
82 |              (clojure.tools.nrepl.server/start-server
83 |               :port port
84 |               :handler @nrepl-handler)]
85 |          (swap! servers assoc editorkit server)))))
86 | 
87 | (defn stop-server [editorkit server]
88 |   (swap! servers dissoc editorkit)
89 |   (clojure.tools.nrepl.server/stop-server server))
90 | 


--------------------------------------------------------------------------------
/nrepl-clojure/src/protege/dialog.clj:
--------------------------------------------------------------------------------
 1 | (ns protege.dialog
 2 |   (:require [protege nrepl model])
 3 |   (:import [java.awt BorderLayout Color]
 4 |            [java.awt.event ActionListener]
 5 |            [javax.swing BoxLayout JButton JLabel JPanel
 6 |             JTextField]))
 7 | 
 8 | (def last-port (ref 7827))
 9 | ;; map between model manager and port
10 | (def servers (ref {}))
11 | 
12 | (defn action-listener [f]
13 |   (proxy [ActionListener] []
14 |     (actionPerformed [event]
15 |       (f event))))
16 | 
17 | (defn start-server-action [editorkit connect disconnect status event]
18 |   (dosync
19 |    (let [s (protege.nrepl/start-server
20 |             editorkit
21 |             @last-port)]
22 |      (alter servers merge {editorkit s})
23 |      (.setEnabled disconnect true)
24 |      (.setEnabled connect false)
25 |      (.setText status
26 |                 (str "Connected on port: " @last-port) )
27 |      (alter last-port inc))))
28 | 
29 | (defn stop-server-action [editorkit connect disconnect status event]
30 |   (dosync
31 |    (let [s (get @servers editorkit)]
32 |      (alter servers dissoc editorkit)
33 |      (.setEnabled connect true)
34 |      (.setEnabled disconnect false)
35 |      (.setText status "Disconnected")
36 |      (protege.nrepl/stop-server editorkit s))))
37 | 
38 | (defn new-dialog-panel [editorkit]
39 |   (let [pn (JPanel.)
40 |         ;; this one takes so a text box with next available port
41 |         ;; and a status bar saying what, er, the status is
42 |         middle (JPanel.)
43 |         ;; takes a set of buttons, "Connect", "Disconnect", "Close"
44 |         ;; greyed as appopriate
45 |         south (JPanel.)
46 |         button (JPanel.)
47 |         port-label (JLabel. "Port")
48 |         port (JTextField. (str @last-port) 20)
49 |         status (JLabel. "Disconnected")
50 |         connect (JButton. "Connect")
51 |         disconnect (JButton. "Disconnect")
52 |         connect-fn
53 |         (partial start-server-action
54 |                  editorkit
55 |                  connect disconnect
56 |                  status)]
57 |     (.addActionListener connect
58 |                         (action-listener connect-fn))
59 |     (doto disconnect
60 |       (.setEnabled false)
61 |       (.addActionListener
62 |        (action-listener
63 |         (partial stop-server-action
64 |                  editorkit connect disconnect
65 |                  status))))
66 | 
67 |     (when @protege.model/auto-connect-on-default
68 |       (connect-fn nil))
69 | 
70 |     (doto pn
71 |       (.setLayout (BorderLayout.))
72 |       (.add middle BorderLayout/CENTER)
73 |       (.add south BorderLayout/SOUTH))
74 |     (doto south
75 |       (.setLayout (BorderLayout.))
76 |       (.add button BorderLayout/NORTH)
77 |       (.add status BorderLayout/SOUTH))
78 |     (doto button
79 |       (.setLayout (BoxLayout. button BoxLayout/X_AXIS))
80 |       (.add connect)
81 |       (.add disconnect))
82 |     (doto middle
83 |       (.setLayout (BorderLayout.))
84 |       (.add port-label BorderLayout/WEST)
85 |       (.add port BorderLayout/CENTER))
86 |     pn))
87 | 
88 | 
89 | 
90 | (defn new-dialog[manager]
91 |   (let [fm (javax.swing.JFrame.)
92 |         cp (.getContentPane fm)]
93 |     (.add cp (new-dialog-panel manager))
94 |     (.pack fm)
95 |     (.setVisible fm true)
96 |     fm))
97 | 


--------------------------------------------------------------------------------
/README.md:
--------------------------------------------------------------------------------
 1 | Protege-Nrepl
 2 | =============
 3 | 
 4 | This is a plugin for the Protege Ontology Editor, which enables
 5 | [nrepl](https://github.com/clojure/tools.nrepl) connection to an existing
 6 | editor. The [pomegranate](https://github.com/cemerick/pomegranate) library is
 7 | included in the bundle, which means that new maven dependencies or classpath
 8 | directories can be added dynamically. Access to the Protege internal data
 9 | structures is possible, meaning that the Protege instance can be manipulated
10 | remotely.
11 | 
12 | Although, it is not tied to it, Protege-Nrepl is being developed for use
13 | with the [Tawny-OWL](https://github.com/phillord/tawny-owl) library;
14 | currently, the release version of Protege and Tawny use different versions of
15 | the OWL API, so a specialized build of Protege is needed.
16 | 
17 | ## Build
18 | 
19 | Both maven and leiningen are required to build the plugin. To build,
20 | 
21 |     cd nrepl-plugin
22 |     mvn install
23 | 
24 | A small `build.sh` script is included which copies the jar file into protege.
25 | 
26 | ## Usage
27 | 
28 | Install the plugin as a normal Protege plugin. This adds a single menu item
29 | into "Tools", called NREPL, which can be used to launch a REPL for the current
30 | Protege workspace.
31 | 
32 | The `protege.model` Clojure namespace provides a number of different vars,
33 | dynamically scoped to the current workspace which you can use to affect the
34 | running Protege instance (if you don't want to do this, there isn't much point
35 | in launching a REPL within Protege!), as well as some utility functions.
36 | 
37 | As Clojure itself and the nrepl server, protege-nrepl packages
38 | [pomegranate](https://github.com/cemerick/pomegranate) which enables the
39 | addition of new dependencies or directories to the classpath in the existing
40 | JVM. The easiest way to do this is to use
41 | [lein-sync](https://github.com/phillord/lein-sync) which creates the relevant
42 | function calls from a leiningen project.
43 | 
44 | ## Init
45 | 
46 | protege-nrepl loads an init file when launching clojure (this happens when the
47 | NREPL menu item is clicked and *not* when Protege is launched. This file is
48 | found at `~/.protege-nrepl/init.clj`, or equivalent on different OSes.
49 | 
50 | My `init.clj` is shown in full at
51 | https://github.com/phillord/tawny-protege/README.md, and enables use with
52 | Tawny-OWL. This setting -- which autoconnects a nrepl once the dialog is
53 | started, is generally useful.
54 | 
55 |     ;; initing the dialog takes ages -- so auto connect
56 |     (dosync (ref-set protege.model/auto-connect-on-default true))
57 | 
58 | 
59 | ## Mailing List
60 | 
61 | There is a [mailing list](mailto:tawny-owl@googlegroups.com)
62 | 
63 | ## License
64 | 
65 | The contents of this file are subject to the LGPL License, Version 3.0.
66 | 
67 | Copyright (C) 2012, 2013, Newcastle University
68 | 
69 | This program is free software: you can redistribute it and/or modify it under
70 | the terms of the GNU Lesser General Public License as published by the Free
71 | Software Foundation, either version 3 of the License, or (at your option) any
72 | later version.
73 | 
74 | This program is distributed in the hope that it will be useful, but WITHOUT
75 | ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
76 | FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
77 | 
78 | You should have received a copy of the GNU Lesser General Public License along
79 | with this program. If not, see http://www.gnu.org/licenses/.
80 | 


--------------------------------------------------------------------------------
/nrepl-plugin/src/main/java/uk/org/russet/protege/NreplMenu.java:
--------------------------------------------------------------------------------
  1 | /*
  2 |  * The contents of this file are subject to the LGPL License, Version 3.0.
  3 |  *
  4 |  * Copyright (C) 2013, Phillip Lord, Newcastle University
  5 |  *
  6 |  * This program is free software: you can redistribute it and/or modify it
  7 |  * under the terms of the GNU Lesser General Public License as published by
  8 |  * the Free Software Foundation, either version 3 of the License, or (at your
  9 |  * option) any later version.
 10 |  *
 11 |  * This program is distributed in the hope that it will be useful, but WITHOUT
 12 |  * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
 13 |  * FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
 14 |  * for more details.
 15 |  *
 16 |  * You should have received a copy of the GNU Lesser General Public License
 17 |  * along with this program. If not, see http://www.gnu.org/licenses/.
 18 |  */
 19 | package uk.org.russet.protege;
 20 | 
 21 | import clojure.lang.DynamicClassLoader;
 22 | import clojure.lang.RT;
 23 | import clojure.lang.Var;
 24 | 
 25 | import java.awt.event.ActionEvent;
 26 | import java.awt.Container;
 27 | import java.awt.BorderLayout;
 28 | import javax.swing.JLabel;
 29 | import javax.swing.JFrame;
 30 | 
 31 | import javax.swing.JPanel;
 32 | import javax.swing.JOptionPane;
 33 | import javax.swing.SwingUtilities;
 34 | import org.apache.log4j.Logger;
 35 | import org.protege.editor.owl.ui.action.ProtegeOWLAction;
 36 | 
 37 | 
 38 | public class NreplMenu extends ProtegeOWLAction {
 39 |     private static final long serialVersionUID = -2896209622461162777L;
 40 |     private static Object lock = new Object();
 41 |     private static boolean clojureInit = false;
 42 | 
 43 |     private final ClassLoader cl = new DynamicClassLoader(this.getClass().getClassLoader());
 44 | 
 45 |     public void initialise() throws Exception {
 46 |     }
 47 | 
 48 | 
 49 |     public void dispose() throws Exception {
 50 |     }
 51 | 
 52 | 
 53 | 
 54 | 
 55 |     public void actionPerformed(ActionEvent event) {
 56 |         Thread.currentThread().
 57 |             setContextClassLoader(cl);
 58 | 
 59 |         final JFrame frame = new JFrame("REPL connect");
 60 |         final Container cp = frame.getContentPane();
 61 |         final JLabel initLabel = new JLabel("Initializing Clojure");
 62 | 
 63 |         cp.add(initLabel);
 64 |         frame.setSize(200,100);
 65 |         frame.setVisible(true);
 66 |         frame.validate();
 67 |         frame.repaint();
 68 | 
 69 |         final Runnable after = new Runnable(){
 70 |                 public void run(){
 71 |                     Thread.currentThread().setContextClassLoader(cl);
 72 |                     Var newDialog = RT.var("protege.dialog", "new-dialog-panel");
 73 |                     cp.removeAll();
 74 |                     JPanel dialog = (JPanel)newDialog.
 75 |                         invoke(getOWLEditorKit());
 76 | 
 77 |                     cp.add(dialog);
 78 |                     frame.pack();
 79 |                     frame.setVisible(true);
 80 |                     frame.validate();
 81 |                     frame.repaint();
 82 | 
 83 |                 }
 84 |             };
 85 | 
 86 |         final Runnable before = new Runnable(){
 87 |                 public void run(){
 88 |                     Thread.currentThread().setContextClassLoader(cl);
 89 |                     try{
 90 |                         if(!clojureInit){
 91 |                             synchronized(lock){
 92 |                                 RT.loadResourceScript("protege/dialog.clj");
 93 |                                 RT.loadResourceScript("protege/nrepl.clj");
 94 |                                 initLabel.setText("Reading User Init");
 95 |                                 Var init = RT.var("protege.nrepl","init");
 96 |                                 init.invoke();
 97 |                                 clojureInit=true;
 98 |                             }
 99 |                         }
100 |                         SwingUtilities.invokeAndWait(after);
101 | 
102 |                     }
103 |                     catch(Exception exp){
104 |                         throw new RuntimeException(exp);
105 |                     }
106 |                 }
107 |             };
108 | 
109 |         new Thread(before).start();
110 |     }
111 | }
112 | 


--------------------------------------------------------------------------------
/nrepl-plugin/pom.xml:
--------------------------------------------------------------------------------
  1 | <?xml version="1.0" encoding="UTF-8"?>
  2 | <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
  3 | 	<modelVersion>4.0.0</modelVersion>
  4 | 	
  5 | 	<parent>
  6 | 	  <groupId>org.sonatype.oss</groupId>
  7 | 	  <artifactId>oss-parent</artifactId>
  8 | 	  <version>7</version>
  9 | 	</parent>
 10 | 
 11 | 
 12 | 
 13 |         <groupId>uk.org.russet</groupId>
 14 | 	<artifactId>uk.org.russet.protege.nrepl</artifactId>
 15 | 	<version>0.1.0-SNAPSHOT</version>
 16 | 	<name>protege-nrepl</name> 
 17 | 	<description>Provide an NREPL client to use Clojure inside Protege</description>
 18 | 
 19 | 	<packaging>bundle</packaging>
 20 | 
 21 | 	<dependencies>
 22 |           <dependency>
 23 |             <groupId>uk.org.russet</groupId>
 24 |             <artifactId>nrepl-clojure</artifactId>
 25 |             <version>1.1.0-SNAPSHOT</version>
 26 |           </dependency>
 27 |           
 28 |           
 29 | 
 30 |           
 31 |           
 32 |           <!-- protege dependencies -->
 33 |           <dependency>
 34 | 	    <groupId>edu.stanford.protege</groupId>
 35 | 	    <artifactId>org.protege.editor.core.application</artifactId>
 36 | 	    <version>5.0.0-beta-16-SNAPSHOT</version>
 37 |             <scope>provided</scope>
 38 |           </dependency>
 39 |           <dependency>
 40 | 	    <groupId>edu.stanford.protege</groupId>
 41 |             <artifactId>org.protege.editor.owl</artifactId>
 42 | 	    <version>5.0.0-beta-16-SNAPSHOT</version>
 43 |             <scope>provided</scope>
 44 |           </dependency>
 45 | 	</dependencies>
 46 | 
 47 | 	<build>
 48 | 	  <plugins>
 49 |             
 50 |             <plugin>
 51 |               <groupId>org.codehaus.mojo</groupId>
 52 |               <artifactId>exec-maven-plugin</artifactId>
 53 |               <version>1.1</version>
 54 |               <executions>
 55 |                 <execution>
 56 |                   <id>compile-with-lein</id>
 57 |                   <phase>initialize</phase>
 58 |                   <goals>
 59 |                     <goal>exec</goal>
 60 |                   </goals>
 61 |                 </execution>
 62 |                 </executions>
 63 |               <configuration>
 64 |               <executable>lein</executable>
 65 |                 <commandlineArgs>install</commandlineArgs>
 66 |                 <workingDirectory>../nrepl-clojure</workingDirectory>
 67 |               </configuration>
 68 |             </plugin>
 69 |             <plugin>
 70 |               <groupId>org.apache.maven.plugins</groupId>
 71 |               <artifactId>maven-compiler-plugin</artifactId>
 72 |               <version>3.0</version>
 73 |               <configuration>
 74 |                 <source>1.6</source>
 75 |                 <target>1.6</target>
 76 |               </configuration>
 77 |             </plugin>
 78 |             <plugin>
 79 | 	      <groupId>org.apache.felix</groupId>
 80 | 	      <artifactId>maven-bundle-plugin</artifactId>
 81 | 	      <version>2.3.7</version>
 82 | 	      <extensions>true</extensions>
 83 | 	      <configuration>
 84 | 		<instructions>
 85 | 		  <Bundle-ClassPath>.</Bundle-ClassPath>
 86 |                   <Bundle-Name>Protege NREPL</Bundle-Name>
 87 |                   <Bundle-Description>Integrate with Protege through a Clojure Process</Bundle-Description>
 88 | 		  <Bundle-SymbolicName>${project.artifactId};singleton:=true</Bundle-SymbolicName>
 89 | 		  <Bundle-Vendor>Phil Lord</Bundle-Vendor>
 90 |                   <!-- We exclude a bunch of things here which otherwise get
 91 |                   into the import list and are not provided from anywhere. How
 92 |                   do they get there? No idea! 
 93 |                   
 94 |                   We also have to include javax.swing.text.html.parser because
 95 |                   it's used by cider-nrepl which breaks otherwise
 96 |                   -->
 97 | 		  <Import-Package>
 98 |                     !javax.servlet*,!junit.*,!org.junit*,!org.apache.*,
 99 |                     !org.testng.*,!sun.misc.*,
100 |                     *,
101 |                     <!--cider-nrepl-->
102 |                     <!-- javax.swing.text.html.parser, -->
103 |                     <!--tawny-->
104 |                     <!-- org.w3c.dom, -->
105 | 		  </Import-Package>
106 |                   <DynamicImport-Package>*</DynamicImport-Package>
107 | 		  <Include-Resource>plugin.xml,{maven-resources}</Include-Resource>
108 |                   <Embed-Transitive>true</Embed-Transitive>
109 |                   <Embed-Dependency>*;scope=compile|runtime</Embed-Dependency>
110 |                   <!--Require-Bundle>
111 |                     org.protege.editor.core.application,
112 |                     org.protege.editor.owl,
113 |                     org.semanticweb.owl.owlapi,
114 |                   </Require-Bundle-->
115 | 		</instructions>
116 | 		<executions>
117 | 		  <execution>
118 | 		    <id>bundle-manifest</id>
119 | 		    <phase>install</phase>
120 | 		    <goals>    
121 | 		      <goal>manifest</goal>
122 | 		    </goals>   
123 | 		  </execution>
124 | 		</executions>
125 | 	      </configuration>
126 |             </plugin>
127 |            </plugins>
128 | 	</build>
129 | </project>
130 | 


--------------------------------------------------------------------------------