├── .Rhistory ├── test ├── genomeFileExample_localfile.txt ├── params.txt ├── genomeFileExample.txt ├── genomeFileExample_2.txt ├── Patterns_list.txt ├── DistributionFile.txt └── DistributionFile.txt~ ├── .gitignore ├── paper_analyses ├── phylo_ordered_names.txt └── gc_matrix.txt ├── README.md~ ├── README.md ├── sequence_probability.py ├── restriction_site_search.sh ├── obtain_nucleotides_model.py ├── paper_outputs ├── ALL.size.txt ├── ALL.failed.txt ├── ALL.suppressed.txt └── ALL.count.txt └── LICENSE /.Rhistory: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /test/genomeFileExample_localfile.txt: -------------------------------------------------------------------------------- 1 | Plaviv /path/Plaviv.fasta 2 | -------------------------------------------------------------------------------- /test/params.txt: -------------------------------------------------------------------------------- 1 | patternfile=test/Patterns_list.txt 2 | genomefile=test/genomeFileExample.txt 3 | localfile=NO 4 | bowtieflag=YES 5 | 6 | -------------------------------------------------------------------------------- /test/genomeFileExample.txt: -------------------------------------------------------------------------------- 1 | Plaviv http://www.ncbi.nlm.nih.gov/Traces/wgs/?download=AAKM01 2 | Babbov http://www.ncbi.nlm.nih.gov/Traces/wgs/?download=AAXT01 3 | -------------------------------------------------------------------------------- /test/genomeFileExample_2.txt: -------------------------------------------------------------------------------- 1 | Nemvec ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF_000209225.1_ASM20922v1/GCF_000209225.1_ASM20922v1_genomic.fna.gz 2 | Plaviv ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF_000002415.2_ASM241v2/GCF_000002415.2_ASM241v2_genomic.fna.gz 3 | -------------------------------------------------------------------------------- /test/Patterns_list.txt: -------------------------------------------------------------------------------- 1 | ACCGGT AgeI 2 | [AG]AATT[CT] ApoI 3 | CCTCAGC BbvCI 4 | [AG]CCGG[CT] BsrFI 5 | GAATTC EcoRI 6 | CATG FatI 7 | GGTACC KpnI 8 | AATT MluCI 9 | TTAA MseI 10 | CCGG MspI 11 | CCATGG NcoI 12 | GCCGGC NgoMIV 13 | GCGGCCGC NotI 14 | ATGCAT NsiI 15 | [AG]CATG[CT] NspI 16 | ACATGT PciI 17 | CTGCAG PstI 18 | CCTGCAGG SbfI 19 | C[AG]CCGG[CT]G SgrAI 20 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | # Byte-compiled / optimized / DLL files 2 | __pycache__/ 3 | *.py[cod~] 4 | *.sh~ 5 | 6 | # C extensions 7 | *.so 8 | 9 | # Distribution / packaging 10 | .Python 11 | env/ 12 | bin/ 13 | build/ 14 | develop-eggs/ 15 | dist/ 16 | eggs/ 17 | lib/ 18 | lib64/ 19 | parts/ 20 | sdist/ 21 | var/ 22 | *.egg-info/ 23 | .installed.cfg 24 | *.egg 25 | 26 | # Installer logs 27 | pip-log.txt 28 | pip-delete-this-directory.txt 29 | 30 | # Unit test / coverage reports 31 | htmlcov/ 32 | .tox/ 33 | .coverage 34 | .cache 35 | nosetests.xml 36 | coverage.xml 37 | 38 | # Translations 39 | *.mo 40 | 41 | # Mr Developer 42 | .mr.developer.cfg 43 | .project 44 | .pydevproject 45 | 46 | # Rope 47 | .ropeproject 48 | 49 | # Django stuff: 50 | *.log 51 | *.pot 52 | 53 | # Sphinx documentation 54 | docs/_build/ 55 | 56 | venv 57 | -------------------------------------------------------------------------------- /test/DistributionFile.txt: -------------------------------------------------------------------------------- 1 | Thu Jun 5 00:00:00 2014 user@pc Species nt AGCT A G C T N AA AG AC AT GA GG GC GT CA CG CC CT TA TG TC TT AAA AAG AAC AAT AGA AGG AGC AGT ACA ACG ACC ACT ATA ATG ATC ATT GAA GAG GAC GAT GGA GGG GGC GGT GCA GCG GCC GCT GTA GTG GTC GTT CAA CAG CAC CAT CGA CGG CGC CGT CCA CCG CCC CCT CTA CTG CTC CTT TAA TAG TAC TAT TGA TGG TGC TGT TCA TCG TCC TCT TTA TTG TTC TTT 2 | Plaviv 26960089 26954678 7786498 5677052 5719042 7772086 4 2023488 1437307 1386526 2068957 1441689 1109610 1420505 1376573 1694010 1118211 1122136 1451068 1757175 1683146 1456358 2014217 746740 501388 416401 679500 362974 391196 346668 312672 437479 304542 293118 315788 530822 487935 296063 679060 563884 341758 218435 292601 406551 293373 281105 289282 456092 310490 282348 347477 346971 369557 219850 410250 469014 330483 372398 491943 263065 213160 313695 304182 375338 215135 298062 396994 242898 332770 346591 503601 564286 238667 349320 529814 385295 372562 454754 434888 389462 264100 412023 366995 561400 462767 568793 739887 3 | Babbov 8173714 8173707 2393523 1698472 1701961 2379751 3 522260 465688 511090 743451 463173 303449 371507 507009 597718 285607 304679 460385 659342 590392 461110 518674 142191 136137 146793 194293 120029 103195 104294 132600 161934 91960 114549 131064 201307 180208 144007 193205 142872 83559 88812 144083 105744 51976 76301 112966 129050 60536 76678 102919 151243 116127 88653 144936 171086 120431 118641 181178 76707 55297 60825 90413 138835 54963 52276 102270 119662 118803 83066 135130 163265 121716 150463 199323 155124 136517 127722 159941 156314 75826 104840 118620 162404 169205 141660 141302 4 | -------------------------------------------------------------------------------- /test/DistributionFile.txt~: -------------------------------------------------------------------------------- 1 | Thu Jun 5 00:00:00 2014 paula@antaresuan Species nt AGCT A G C T N AA AG AC AT GA GG GC GT CA CG CC CT TA TG TC TT AAA AAG AAC AAT AGA AGG AGC AGT ACA ACG ACC ACT ATA ATG ATC ATT GAA GAG GAC GAT GGA GGG GGC GGT GCA GCG GCC GCT GTA GTG GTC GTT CAA CAG CAC CAT CGA CGG CGC CGT CCA CCG CCC CCT CTA CTG CTC CTT TAA TAG TAC TAT TGA TGG TGC TGT TCA TCG TCC TCT TTA TTG TTC TTT 2 | Plaviv 26960089 26954678 7786498 5677052 5719042 7772086 4 2023488 1437307 1386526 2068957 1441689 1109610 1420505 1376573 1694010 1118211 1122136 1451068 1757175 1683146 1456358 2014217 746740 501388 416401 679500 362974 391196 346668 312672 437479 304542 293118 315788 530822 487935 296063 679060 563884 341758 218435 292601 406551 293373 281105 289282 456092 310490 282348 347477 346971 369557 219850 410250 469014 330483 372398 491943 263065 213160 313695 304182 375338 215135 298062 396994 242898 332770 346591 503601 564286 238667 349320 529814 385295 372562 454754 434888 389462 264100 412023 366995 561400 462767 568793 739887 3 | Babbov 8173714 8173707 2393523 1698472 1701961 2379751 3 522260 465688 511090 743451 463173 303449 371507 507009 597718 285607 304679 460385 659342 590392 461110 518674 142191 136137 146793 194293 120029 103195 104294 132600 161934 91960 114549 131064 201307 180208 144007 193205 142872 83559 88812 144083 105744 51976 76301 112966 129050 60536 76678 102919 151243 116127 88653 144936 171086 120431 118641 181178 76707 55297 60825 90413 138835 54963 52276 102270 119662 118803 83066 135130 163265 121716 150463 199323 155124 136517 127722 159941 156314 75826 104840 118620 162404 169205 141660 141302 4 | -------------------------------------------------------------------------------- /paper_analyses/phylo_ordered_names.txt: -------------------------------------------------------------------------------- 1 | Bignat 2 | Leibra 3 | Trycru 4 | Ectsil 5 | Aurlim 6 | Hypcat 7 | Aurano 8 | Blahom 9 | Nangad 10 | Fracyl 11 | Psemul 12 | Phatri 13 | Thapse 14 | Albcan 15 | Pytult 16 | Sappar 17 | Phyinf 18 | Hyaara 19 | Psecub 20 | Gialam 21 | Permar 22 | Stylem 23 | Oxytri 24 | Partet 25 | Ichmul 26 | Tetthe 27 | Hamham 28 | Toxgon 29 | Crypa1 30 | Babbov 31 | Thepar 32 | Plaviv 33 | Cyamer 34 | Acacas 35 | Polpal 36 | Dicdis 37 | Enthis 38 | Guithe 39 | Emihux 40 | Phypat 41 | Lacsat 42 | Sollyc 43 | Mimgut 44 | Citlan 45 | Cucsat 46 | Linusi 47 | Poptri 48 | Manesc 49 | Jatcur 50 | Riccom 51 | Betnan 52 | Medtru 53 | Lotjap 54 | Cajcaj 55 | Glymax 56 | Pruper 57 | Maldom 58 | Fraves 59 | Cansat 60 | Vitvin 61 | Citsin 62 | Euccam 63 | Carpap 64 | Brarap 65 | Eutpar 66 | Aratha 67 | Thecac 68 | Gosrai 69 | Phodac 70 | Setita 71 | Zeamay 72 | Sorbic 73 | Leeper 74 | Orysat 75 | Bradis 76 | Horvul 77 | Triaes 78 | Musacu 79 | Selmoe 80 | Chlrei 81 | Volcar 82 | Ostluc 83 | Micpus 84 | Chlvar 85 | Cocsub 86 | Ast_sp 87 | Naegru 88 | Trivag 89 | Monbre 90 | Sal_sp 91 | Ampque 92 | Nemvec 93 | Acrdig 94 | Hydmag 95 | Alamos 96 | Mnelei 97 | Schmed 98 | Schman 99 | Closin 100 | Patmin 101 | Lytvar 102 | Strpur 103 | Oikdio 104 | Cioint 105 | Petmar 106 | Calmil 107 | Leueri 108 | Salsal 109 | Gadmor 110 | Orenil 111 | Neobri 112 | Mayzeb 113 | Hapbur 114 | Labfue 115 | Mchcon 116 | Melaur 117 | Rhaeso 118 | Punnye 119 | Diclab 120 | Tetnig 121 | Takrub 122 | Gasacu 123 | Xipmac 124 | Orylat 125 | Danrer 126 | Lepocu 127 | Xentro 128 | Tupbel 129 | Macfas 130 | Papanu 131 | Nomleu 132 | Gorgor 133 | Homsap 134 | Pantro 135 | Ponabe 136 | Caljac 137 | Saibol 138 | Tarsyr 139 | Daumad 140 | Otogar 141 | Orycun 142 | Ochpri 143 | Musmus 144 | Ratnor 145 | Crigri 146 | Micoch 147 | Spetri 148 | Dipord 149 | Jacjac 150 | Hetgla 151 | Cavpor 152 | Octdeg 153 | Chilan 154 | Chohof 155 | Dasnov 156 | Equcab 157 | Cersim 158 | Sorara 159 | Concri 160 | Erieur 161 | Susscr 162 | Vicpac 163 | Camfer 164 | Turtru 165 | Oviari 166 | Bostau 167 | Ptevam 168 | Myodav 169 | Eptfus 170 | Felcat 171 | Ailmel 172 | Musput 173 | Canlup 174 | Chrasi 175 | Procap 176 | Echtel 177 | Eleedw 178 | Oryafe 179 | Loxafr 180 | Triman 181 | Mondom 182 | Maceug 183 | Sarhar 184 | Ornana 185 | Pelsin 186 | Chrpic 187 | Anocar 188 | Pytmol 189 | Melund 190 | Ficalb 191 | Taegut 192 | Geofor 193 | Galgal 194 | Melgal 195 | Allmis 196 | Latcha 197 | Braflo 198 | Sackow 199 | Aplcal 200 | Lotgig 201 | Pinfuc 202 | Cragig 203 | Captel 204 | Helrob 205 | Menmol 206 | Tricas 207 | Linhum 208 | Camflo 209 | Solinv 210 | Acrech 211 | Attcep 212 | Pogbar 213 | Harsal 214 | Megrot 215 | Bomter 216 | Apimel 217 | Nasvit 218 | Dromel 219 | Lutlon 220 | Phlpap 221 | Anogam 222 | Culqui 223 | Aedaeg 224 | Maydes 225 | Helmel 226 | Danple 227 | Bommor 228 | Mansex 229 | Acypis 230 | Rhopro 231 | Pedhum 232 | Dappul 233 | Lepsal 234 | Strmar 235 | Teturt 236 | Vardes 237 | Metocc 238 | Ixosca 239 | Caeele 240 | Hetbac 241 | Strrat 242 | Pripac 243 | Ascsuu 244 | Brumal 245 | Wucban 246 | Loaloa 247 | Oncvol 248 | Melinc 249 | Hetgly 250 | Burxyl 251 | Trispi 252 | Triadh 253 | Capowc 254 | Gonpro 255 | Batden 256 | Hompol 257 | Spipun 258 | Pir_sp 259 | Allmac 260 | Catang 261 | Concor 262 | Phybla 263 | Muccir 264 | Coerev 265 | Morelo 266 | Vavcul 267 | Hamtva 268 | Edhaed 269 | Nempar 270 | Annalg 271 | Enccun 272 | Entbie 273 | Noscer 274 | Vitcor 275 | Sphste 276 | Jaaarg 277 | Agabis 278 | Hypsub 279 | Galmar 280 | Amamus 281 | Ompole 282 | Pleost 283 | Gymlux 284 | Lacbic 285 | Plicri 286 | Monper 287 | Copcin 288 | Schcom 289 | Hebcyl 290 | Pilcro 291 | Sclcit 292 | Pismic 293 | Serlac 294 | Conput 295 | Paxrub 296 | Hydpin 297 | Suilut 298 | Aurdel 299 | Glotra 300 | Hetirr 301 | Stehir 302 | Tulcal 303 | Botbot 304 | Sebver 305 | Pirind 306 | Fommed 307 | Phlgig 308 | Fibrad 309 | Dicsqu 310 | Ganluc 311 | Wolcoc 312 | Traver 313 | Pospla 314 | Fompin 315 | Cersub 316 | Bjeadu 317 | Punstr 318 | Phlbre 319 | Phacar 320 | Triasa 321 | Crygat 322 | Tremes 323 | Dac_sp 324 | Walseb 325 | Usthor 326 | Malglo 327 | Mixosm 328 | Rhotor 329 | Rhoglu 330 | Sporos 331 | Micvio 332 | Pucgra 333 | Mellar 334 | Croque 335 | Schjap 336 | Saicom 337 | Tapdef 338 | Thelan 339 | Mel_sp 340 | Conapo 341 | Artoli 342 | Tubmel 343 | Dalesc 344 | Hyp_sp 345 | Colglo 346 | Glogra 347 | Verdah 348 | Acralc 349 | Fusoxy 350 | Gibmon 351 | Nechae 352 | Triree 353 | Cormil 354 | Beabas 355 | Metacr 356 | Neogan 357 | Peripo 358 | Acitak 359 | Clafus 360 | Epityp 361 | Apimon 362 | Magory 363 | Gaegra 364 | Ophcla 365 | Crypa2 366 | Grocla 367 | Sormac 368 | Neucra 369 | Mycthe 370 | Chathe 371 | Thiter 372 | Geodes 373 | Oidmai 374 | Marbru 375 | Botfuc 376 | Sclscl 377 | Glaloz 378 | Erypis 379 | Blugra 380 | Exoder 381 | Artben 382 | Trirub 383 | Ajecap 384 | Parbra 385 | Cocpos 386 | Uncree 387 | Ascapi 388 | Aspfum 389 | Pendig 390 | Talmar 391 | Neofis 392 | Eurher 393 | Xanpar 394 | Clagra 395 | Didexi 396 | Coclun 397 | Settur 398 | Pyrter 399 | Altarb 400 | Phanod 401 | Aurpul 402 | Clasph 403 | Zascel 404 | Cerzea 405 | Zymard 406 | Mycpop 407 | Baucom 408 | Macpha 409 | Aciric 410 | Clalus 411 | Metfru 412 | Hypbur 413 | Lipsta 414 | Saccer 415 | Pactan 416 | Vanpol 417 | Klumar 418 | Naucas 419 | Dekbru 420 | Kompas 421 | Lacklu 422 | Cybjad 423 | Wicano 424 | Pickud 425 | Canalb 426 | Ogapar 427 | Meygui 428 | Debhan 429 | Babino 430 | Spapas 431 | Lodelo 432 | Ascrub 433 | Hanval 434 | Nadful -------------------------------------------------------------------------------- /README.md~: -------------------------------------------------------------------------------- 1 | ## PredRAD 2 | 3 | High-throughput sequencing of reduced representation libraries obtained through digestion with restriction enzymes–generally known as restriction-site associated DNA sequencing (RAD-seq)–is now one most commonly used strategies to generate single nucleotide polymorphism data in eukaryotes. The choice of restriction enzyme is critical for the design of any RAD-seq study as it determines the number of genetic markers that can be obtained for a given species, and ultimately the success of a project. 4 | 5 | For the design of a study using RAD-seq, or a related methodology, there are two general fundamental questions that researchers face: i) what is the best restriction enzyme to use to obtain a desired number of RAD tags in the organism of interest? And ii) how many markers can be obtained with a particular enzyme in the organism of interest? This software pipeline will allow any researcher to obtain an approximate answer to these questions and will help guide the design of any study using RAD sequencing and related methods. 6 | 7 | This Git contains the software code and output results from [Herrera S., P.H. Reyes-Herrera & T.M. Shank (2015) Predicting RAD-seq Marker Numbers across the Eukaryotic Tree of Life.](https://gbe.oxfordjournals.org/content/7/12/3207.full) 8 | 9 | 10 | 11 | 12 | 13 | ---------------- 14 | #### Requirements 15 | 16 | - Python 2.7 and above 17 | - [Biopython](http://biopython.org/wiki/Main_Page) 18 | - [Bowtie](https://sourceforge.net/projects/bowtie-bio/files/bowtie/1.0.1) 19 | 20 | ---------------- 21 | #### Install 22 | 23 | Download python and shell scritps 24 | 25 | For the shell script (change execute permissions using chmod u+x) 26 | 27 | ---------------- 28 | #### Usage 29 | 30 | 31 | 32 | 33 | - **restriction_site_search.sh**. This shell script will search all the restriction sites from the file (patternfilename) in every genome from the input file (genomefilename). As a result the script provides the following files: 34 | 35 | - ALL.count.txt - contains a table with the number of restriciton sites found in each genome 36 | - ALL.size.txt - contains a table with the size of each genome 37 | * If bowtieflag is equal to YES then it provides the following files: ALL.aligned.txt, ALL.failed.txt, ALL.processed.txt, ALL.suppressed.txt - each file with a table summarizing bowtie output(reads aligned, failed, processed and suppressed) for each genome. 38 | 39 | The input arguments are: 40 | - parametersfilename: name of file with four parameters (see [test/params.txt](https://github.com/phrh/PredRAD/blob/master/test/params.txt)) 41 | * genomefilename: name of file with table with two columns (1) species code and (2) link to whole genome fasta file or path to fasta file 42 | (for genome file example with url see [test/genomeFileExample.txt](https://github.com/phrh/Genome-wide-predictability-of-restriction-sites-across-the-eukaryotic-tree-of-life/blob/master/test/genomeFileExample.txt), for file with localfile path see [test/genomeFileExample_localfile.txt](https://github.com/phrh/PredRAD/blob/master/test/genomeFileExample_localfile.txt)) 43 | * patternfilename - name of file with table with two columns (1) restriction site regular expression and (2) restriction site name 44 | (see [test/Patterns_list.txt](https://github.com/phrh/Genome-wide-predictability-of-restriction-sites-across-the-eukaryotic-tree-of-life/blob/master/test/Patterns_list.txt)) 45 | * bowtieflag equals YES (default value) to use bowtie to align. Any other value if you do not want to use bowtie. 46 | * localfile flag equals NO (default value) to download the fasta files. If the flag equals YES, the program will search for a localfile in the indicated path 47 | 48 | To run, just write on shell 49 | 50 | _./restriction_site_search.sh parametersfilename_ 51 | 52 | ---------------- 53 | - **obtain_nucleotides_model.py**. This python script obtains the nucleotides, dinucleotide and trinucleotides distribution for each genome from the input file (genomefilename) 54 | 55 | 56 | The input arguments are: 57 | 58 | - genomefilename: name of file with table with two columns (1) species code and (2) link to whole genome fasta file or path to fasta file.(for genome file example with url see [test/genomeFileExample_2.txt](https://github.com/phrh/Genome-wide-predictability-of-restriction-sites-across-the-eukaryotic-tree-of-life/blob/master/test/genomeFileExample_2.txt), for file with localfile path see [test/genomeFileExample_localfile.txt](https://github.com/phrh/PredRAD/blob/master/test/genomeFileExample_localfile.txt)) 59 | - resultsfile : name of the outputfile 60 | - localfileflag : yes if the files are in local, no otherwise. 61 | 62 | To run, just write on shell 63 | 64 | _python obtain_nucleotides_model.py genomefilename resultsfile localfileflag_ 65 | 66 | For details of events that occur once the script runs, please check the .log file. 67 | ---------------- 68 | 69 | - **sequence_probability.py**. This python script obtains the probability for each restriction site from the input file (patternfilename) in every genome considering nt, dint and trint frequencies (distributionfile). As a result the script provides the following files: 70 | 71 | - $distributionfile$_nt - contains a table with the sequences probabilities (based on nucleotide probabilities) 72 | - $distributionfile$_dint - contains a table with the sequences probabilities (based on dinucleotides probabilities) 73 | - $distributionfile$_trint - contains a table with the sequences probabilities (based on trinucleotides probabilities) 74 | 75 | The input arguments are: 76 | - distributionfile - output from genome_nucleotide_distrib_paper (see [test/DistributionFile.txt](https://github.com/phrh/Genome-wide-predictability-of-restriction-sites-across-the-eukaryotic-tree-of-life/blob/master/test/DistributionFile.txt)) 77 | - patternfilename - name of file with table with tow columns (1) restriction site regular expression and (2) restriction site name 78 | (see [test/Patterns_list.txt](https://github.com/phrh/Genome-wide-predictability-of-restriction-sites-across-the-eukaryotic-tree-of-life/blob/master/test/Patterns_list.txt)) 79 | 80 | To run, just write on shell 81 | 82 | _python sequence_probability.py distributionfile patternsfile_ 83 | 84 | 85 | #### License 86 | 87 | Created by Santiago Herrera and Paula H. Reyes-Herrera on 11 June 2014 88 | Copyright (c) 2014 Santiago Herrera and Paula H. Reyes-Herrera. All rights reserved. 89 | 90 | PredRAD is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, version 2. 91 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | ## PredRAD 2 | 3 | High-throughput sequencing of reduced representation libraries obtained through digestion with restriction enzymes–generally known as restriction-site associated DNA sequencing (RAD-seq)–is now one most commonly used strategies to generate single nucleotide polymorphism data in eukaryotes. The choice of restriction enzyme is critical for the design of any RAD-seq study as it determines the number of genetic markers that can be obtained for a given species, and ultimately the success of a project. 4 | 5 | For the design of a study using RAD-seq, or a related methodology, there are two general fundamental questions that researchers face: i) what is the best restriction enzyme to use to obtain a desired number of RAD tags in the organism of interest? And ii) how many markers can be obtained with a particular enzyme in the organism of interest? This software pipeline will allow any researcher to obtain an approximate answer to these questions and will help guide the design of any study using RAD sequencing and related methods. 6 | 7 | This Git contains the software code and output results from [Herrera S., P.H. Reyes-Herrera & T.M. Shank (2015) Predicting RAD-seq Marker Numbers across the Eukaryotic Tree of Life.](https://gbe.oxfordjournals.org/content/7/12/3207.full) 8 | 9 | 10 | 11 | 12 | 13 | ---------------- 14 | #### Requirements 15 | 16 | - Python 2.7 and above 17 | - [Biopython](http://biopython.org/wiki/Main_Page) 18 | - [Bowtie](https://sourceforge.net/projects/bowtie-bio/files/bowtie/1.0.1) 19 | 20 | ---------------- 21 | #### Install 22 | 23 | Download python and shell scritps 24 | 25 | For the shell script (change execute permissions using chmod u+x) 26 | 27 | ---------------- 28 | #### Usage 29 | 30 | 31 | 32 | 33 | - **restriction_site_search.sh**. This shell script will search all the restriction sites from the file (patternfilename) in every genome from the input file (genomefilename). As a result the script provides the following files: 34 | 35 | - ALL.count.txt - contains a table with the number of restriciton sites found in each genome 36 | - ALL.size.txt - contains a table with the size of each genome 37 | * If bowtieflag is equal to YES then it provides the following files: ALL.aligned.txt, ALL.failed.txt, ALL.processed.txt, ALL.suppressed.txt - each file with a table summarizing bowtie output(reads aligned, failed, processed and suppressed) for each genome. 38 | 39 | The input arguments are: 40 | - parametersfilename: name of file with four parameters (see [test/params.txt](https://github.com/phrh/PredRAD/blob/master/test/params.txt)) 41 | * genomefilename: name of file with table with two columns (1) species code and (2) link to whole genome fasta file or path to fasta file 42 | (for genome file example with url see [test/genomeFileExample.txt](https://github.com/phrh/Genome-wide-predictability-of-restriction-sites-across-the-eukaryotic-tree-of-life/blob/master/test/genomeFileExample.txt), for file with localfile path see [test/genomeFileExample_localfile.txt](https://github.com/phrh/PredRAD/blob/master/test/genomeFileExample_localfile.txt)) 43 | * patternfilename - name of file with table with two columns (1) restriction site regular expression and (2) restriction site name 44 | (see [test/Patterns_list.txt](https://github.com/phrh/Genome-wide-predictability-of-restriction-sites-across-the-eukaryotic-tree-of-life/blob/master/test/Patterns_list.txt)) 45 | * bowtieflag equals YES (default value) to use bowtie to align. Any other value if you do not want to use bowtie. 46 | * localfile flag equals NO (default value) to download the fasta files. If the flag equals YES, the program will search for a localfile in the indicated path 47 | 48 | To run, just write on shell 49 | 50 | _./restriction_site_search.sh parametersfilename_ 51 | 52 | ---------------- 53 | - **obtain_nucleotides_model.py**. This python script obtains the nucleotides, dinucleotide and trinucleotides distribution for each genome from the input file (genomefilename) 54 | 55 | 56 | The input arguments are: 57 | 58 | - genomefilename: name of file with table with two columns (1) species code and (2) link to whole genome fasta file or path to fasta file.(for genome file example with url see [test/genomeFileExample_2.txt](https://github.com/phrh/Genome-wide-predictability-of-restriction-sites-across-the-eukaryotic-tree-of-life/blob/master/test/genomeFileExample_2.txt), for file with localfile path see [test/genomeFileExample_localfile.txt](https://github.com/phrh/PredRAD/blob/master/test/genomeFileExample_localfile.txt)) 59 | - resultsfile : name of the outputfile 60 | - localfileflag : yes if the files are in local, no otherwise. 61 | 62 | To run, just write on shell 63 | 64 | _python obtain_nucleotides_model.py genomefilename resultsfile localfileflag_ 65 | 66 | For details of events that occur once the script runs, please check the .log file. 67 | 68 | 69 | ---------------- 70 | 71 | - **sequence_probability.py**. This python script obtains the probability for each restriction site from the input file (patternfilename) in every genome considering nt, dint and trint frequencies (distributionfile). As a result the script provides the following files: 72 | 73 | - $distributionfile$_nt - contains a table with the sequences probabilities (based on nucleotide probabilities) 74 | - $distributionfile$_dint - contains a table with the sequences probabilities (based on dinucleotides probabilities) 75 | - $distributionfile$_trint - contains a table with the sequences probabilities (based on trinucleotides probabilities) 76 | 77 | The input arguments are: 78 | - distributionfile - output from genome_nucleotide_distrib_paper (see [test/DistributionFile.txt](https://github.com/phrh/Genome-wide-predictability-of-restriction-sites-across-the-eukaryotic-tree-of-life/blob/master/test/DistributionFile.txt)) 79 | - patternfilename - name of file with table with tow columns (1) restriction site regular expression and (2) restriction site name 80 | (see [test/Patterns_list.txt](https://github.com/phrh/Genome-wide-predictability-of-restriction-sites-across-the-eukaryotic-tree-of-life/blob/master/test/Patterns_list.txt)) 81 | 82 | To run, just write on shell 83 | 84 | _python sequence_probability.py distributionfile patternsfile_ 85 | 86 | 87 | #### License 88 | 89 | Created by Santiago Herrera and Paula H. Reyes-Herrera on 11 June 2014 90 | Copyright (c) 2014 Santiago Herrera and Paula H. Reyes-Herrera. All rights reserved. 91 | 92 | PredRAD is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, version 2. 93 | -------------------------------------------------------------------------------- /sequence_probability.py: -------------------------------------------------------------------------------- 1 | # PredRAD - guides the design of any study using RAD sequencing and related methods. 2 | # 3 | # Created by Santiago Herrera and Paula H. Reyes-Herrera on 11 June 2014 4 | # Copyright (c) 2014 Santiago Herrera and Paula H. Reyes-Herrera. All rights reserved. 5 | # 6 | # This file is part of PredRAD. 7 | # 8 | # PredRAD is free software: you can redistribute it and/or modify 9 | # it under the terms of the GNU General Public License as published by 10 | # the Free Software Foundation, version 2. 11 | #------------------------------------------------------------------------------------- 12 | #!/usr/bin/env python 13 | # Usage: python sequence_probability.py distributionfile patternsfile 14 | 15 | #-------------------------------FUNCTIONS-LIST---------------------------------------- 16 | # writelog(filename,text) 17 | # scalar_multiply(matrix, scalar,sizerow,sizecol,r) 18 | # scalar_multiply_vec(vector,scalar,sizecol,r) 19 | # obtain_model(fields,nt,dint,freqdint,trint) 20 | # sequence2numbers(sequence) 21 | # prob_nt(sequence,nt) 22 | # prob_dint(sequence,dint,nt) 23 | # prob_trint(sequence,trint,freqdint,nt) 24 | # obtain_paths(pattern) 25 | # find_paths(sequences,path,pospath) 26 | # int_main(distributionfile, patternsfile) 27 | 28 | #---------------------------------FUNCTIONS------------------------------------------- 29 | 30 | def writelog(filename,text): 31 | import os 32 | from datetime import date 33 | import getpass 34 | f = open(filename, 'a+') 35 | now = date.today().ctime() 36 | myhost = os.uname()[1] 37 | user = getpass.getuser() 38 | f.write(str(now)+' '+user+'@'+myhost+'\t'+text+'\n') 39 | f.close() 40 | 41 | def scalar_multiply(matrix, scalar,sizerow,sizecol,r): 42 | for row in range(sizerow): 43 | for column in range(sizecol): 44 | r[row][column]=matrix[row][column]*scalar 45 | 46 | def scalar_multiply_vec(vector,scalar,sizecol,r): 47 | for column in range(sizecol): 48 | r[column]=vector[column]*scalar 49 | 50 | def obtain_model(fields,nt,dint,freqdint,trint): 51 | totalnt=float(fields[1]) 52 | totalacgt=float(fields[2]) 53 | #nucleotides frequencies 54 | countnt=0 55 | #AGCT 56 | for i in range(4): 57 | nt[0+i]=float(fields[3+i])/totalacgt 58 | #AGCT 59 | #dinucleotides frequencies 60 | totaldint=0 61 | for i in range(4): 62 | for j in range(4): 63 | dint[i][0+j]=float(fields[8+j+i*4]) 64 | totaldint=totaldint+dint[i][0+j] 65 | freqdint[i][0+j]=dint[i][0+j] 66 | 67 | #obtain frequencies dividing counters by totaldint 68 | scalar_multiply(dint,float(1/totaldint),4,4,dint) 69 | scalar_multiply(freqdint,float(1/totaldint),4,4,freqdint) 70 | #obtain conditional probabilities 71 | #divide frequencies by the sum of each row of frecuencies 72 | for i in range(4): 73 | scalar_multiply_vec(dint[i],float(1/sum(dint[i])),4,dint[i]) 74 | #AGCT 75 | #trinucleotides frequencies 76 | totaltrint=0 77 | for i in range(16): 78 | for j in range(4): 79 | trint[i][0+j]=float(fields[24+j+i*4]) 80 | totaltrint=totaltrint+trint[i][0+j] 81 | scalar_multiply(trint,float(1/totaltrint),16,4,trint) 82 | for i in range(16): 83 | scalar_multiply_vec(trint[i],float(1/sum(trint[i])),4,trint[i]) 84 | 85 | def sequence2numbers(sequence): 86 | #Maps sequence2numbers 87 | #A->0, G->1, C->2, T->3 88 | options={'A':0,'G':1,'C':2,'T':3} 89 | size=len(sequence) 90 | result=[-1 for x in xrange(size)] 91 | for i in range(size): 92 | result[i]=options[sequence[i]] 93 | return result 94 | 95 | def prob_nt(sequence,nt): 96 | numbers=sequence2numbers(sequence) 97 | prob=1 98 | for j in range(len(numbers)): 99 | prob=prob*nt[numbers[j]] 100 | return prob 101 | 102 | def prob_dint(sequence,dint,nt): 103 | numbers=sequence2numbers(sequence) 104 | prob=nt[numbers[0]] 105 | for j in range(len(numbers)-1): 106 | prob=prob*dint[numbers[j]][numbers[j+1]] 107 | return prob 108 | 109 | def prob_trint(sequence,trint,freqdint,nt): 110 | numbers=sequence2numbers(sequence) 111 | prob=freqdint[numbers[0]][numbers[1]] 112 | for j in range(len(numbers)-2): 113 | row=numbers[j]*4+numbers[j+1] 114 | prob=prob*trint[row][numbers[j+2]] 115 | return prob 116 | 117 | 118 | def obtain_paths(pattern): 119 | #obtain all possible paths for a motif 120 | #Replacing IUPAC dictionary 121 | iupacdict = {'M':'[AC]','R':'[AG]','W':'[AT]','S':'[CG]','Y':'[CT]','K':'[GT]','V':'[ACG]','H':'[ACT]','D':'[AGT]','B':'[CGT]','X':'[ACGT]','N':'[ACGT]'} 122 | for key, value in iupacdict.iteritems(): 123 | pattern=pattern.replace(key,value) 124 | 125 | paths=[] 126 | npaths=[] 127 | pospaths=[] 128 | tempstring=[] 129 | len1=len(pattern) 130 | flag=0 131 | match='' 132 | count=0 133 | #Obtaining template(match), paths and positions 134 | for i in range(len1): 135 | if flag==1 : 136 | if pattern[i]==']': 137 | paths.append(tempstring) 138 | npaths.append(len(tempstring)) 139 | tempstring=[] 140 | flag=0 141 | else: 142 | tempstring.append(pattern[i]) 143 | elif pattern[i]=='[': 144 | count=count+1 145 | flag=1 146 | match=match+'-' 147 | pospaths.append(count-1) 148 | else: 149 | match=match+pattern[i] 150 | count=count+1 151 | #Finding paths and saving everything in the variable sequences 152 | sequences=[] 153 | sequences.append(match) 154 | for j in range(len(paths)): 155 | sequences=find_paths(sequences,paths[j],pospaths[j]) 156 | return sequences 157 | 158 | 159 | 160 | 161 | def find_paths(sequences,path,pospath): 162 | templates=sequences 163 | sequences=[] 164 | for j in range(len(templates)): 165 | temp=templates[j] 166 | for i in range(len(path)): 167 | seq=temp[:pospath]+path[i]+temp[pospath+1:] 168 | sequences.append(seq) 169 | return sequences 170 | 171 | 172 | 173 | def int_main(distributionfile, patternsfile): 174 | import os 175 | from datetime import date 176 | now = date.today() 177 | logfile='sequence_probability_'+str(now) 178 | writelog(logfile,"--------------------") 179 | writelog(logfile,"Input files: distributions -"+distributionfile+', patterns '+patternsfile) 180 | d = open(distributionfile,'r') 181 | p=open(patternsfile,'r') 182 | text='\t' 183 | for line in p: 184 | pattern,patternname=line.split() 185 | text=text+patternname+'\t' 186 | p.close() 187 | lines=d.read().split('\n') 188 | #fOR GENOMES 189 | filent = open(distributionfile+'_nt','a') 190 | filedint = open(distributionfile+'_dint','a') 191 | filetrint = open(distributionfile+'_trint','a') 192 | filent.write(text+'\n') 193 | filedint.write(text+'\n') 194 | filetrint.write(text+'\n') 195 | # remove first line (header) and last line(empty) 196 | for line in lines[1:-1] : 197 | #mononucleotide frequencies 198 | nt = [0 for x in xrange(4)] 199 | #dinucleotide transition prob 200 | dint = [[0 for x in xrange(4)] for x in xrange(4)] 201 | #dinucleotide frequencies 202 | fdint = [[0 for x in xrange(4)] for x in xrange(4)] 203 | #trinucleotide transition prob. 204 | trint = [[0 for x in xrange(4)] for x in xrange(16)] 205 | fields = line.split("\t") 206 | scode=fields[0] 207 | textnt=scode+'\t' 208 | textdint=scode+'\t' 209 | texttrint=scode+'\t' 210 | #obtain model (frequencies, conditional probabilities) 211 | if(len(fields[1])>0): 212 | obtain_model(fields,nt,dint,fdint,trint) 213 | p=open(patternsfile,'r') 214 | for line in p: 215 | pattern,patternname=line.split() 216 | #obtain all sequences from a pattern 217 | sequences=obtain_paths(pattern) 218 | probnt=0 219 | probdint=0 220 | probtrint=0 221 | #adding probabilities from all possible paths in a pattern 222 | for nseq in range(len(sequences)): 223 | probnt=probnt+prob_nt(sequences[nseq],nt) 224 | probdint=probdint+ prob_dint(sequences[nseq],dint,nt) 225 | probtrint=probtrint+prob_trint(sequences[nseq],trint,fdint,nt) 226 | textnt=textnt+str(probnt)+'\t' 227 | textdint=textdint+str(probdint)+'\t' 228 | texttrint=texttrint+str(probtrint)+'\t' 229 | 230 | textnt=textnt+'\n' 231 | textdint=textdint+'\n' 232 | texttrint=texttrint+'\n' 233 | filent.write(textnt) 234 | filedint.write(textdint) 235 | filetrint.write(texttrint) 236 | p.close() 237 | filent.close() 238 | filedint.close() 239 | filetrint.close() 240 | 241 | 242 | #---------------------------------------------------------------------------------- 243 | 244 | import sys 245 | #Pass distribution file and patternsfile from shell 246 | int_main(sys.argv[1],sys.argv[2]) 247 | 248 | 249 | 250 | 251 | -------------------------------------------------------------------------------- /restriction_site_search.sh: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | # PredRAD - guides the design of any study using RAD sequencing and related methods. 3 | # 4 | # Created by Santiago Herrera and Paula H. Reyes-Herrera on 11 June 2014 5 | # Copyright (c) 2014 Santiago Herrera and Paula H. Reyes-Herrera. All rights reserved. 6 | # 7 | # This file is part of PredRAD. 8 | # 9 | # PredRAD is free software: you can redistribute it and/or modify 10 | # it under the terms of the GNU General Public License as published by 11 | # the Free Software Foundation, version 2. 12 | # Please cite : Santiago Herrera, Paula H. Reyes-Herrera, and Timothy M. Shank. Predicting RAD-seq Marker Numbers across the Eukaryotic Tree of Life. Genome Biol Evol (2015) Vol. 7 3207-3225 13 | #------------------------------------------------------------------------------------- 14 | # Usage: ./restriction_site_search.sh genomefilename patternfilename localfile 15 | # Arguments: 16 | # $1 genomefile 17 | # $2 patternfile 18 | # $3 localfile flag (Yes - if the genome file contains paths instead of url, No - otherwise) default value NO 19 | # $4 bowtieflag (Yes to use bowtie to align and get bowtie statistics, No - otherwise) default value YES 20 | #-------------------------------FUNCTIONS-LIST---------------------------------------- 21 | # pattern_upstream_downstream 22 | # process_inputfile 23 | # count_nt_sites 24 | # extract_bowtie_stats 25 | # extract_bowtie_stats_by_genome 26 | # extract_bowtie_stats_for_all 27 | # check_inputfile 28 | # writelog 29 | #---------------------------------FUNCTIONS------------------------------------------- 30 | 31 | function writelog(){ 32 | echo "[$(date)] ($USER@$(hostname)) - $1" >> $2 33 | } 34 | 35 | function check_inputfile(){ 36 | #FUNCTION check_inputfile 37 | #Arguments: 38 | # $1 file name 39 | # $2 temporary folder name 40 | # This function checks for line break at end of file and add if missing and Remove blank lines 41 | filename=$(basename $1); 42 | od -c $1 | tail -2 > $2/last_characters.txt; 43 | cat $2/last_characters.txt |while read number character; 44 | do 45 | if [ "$character" != "\n" ] 46 | then 47 | while read line || [ -n "$line" ]; 48 | do echo $line; 49 | done < $1 > $2/$filename.corrected; 50 | cp $2/$filename.corrected $1; 51 | fi; 52 | done; 53 | sed -i '/^[[:space:]]*$/d' $1; 54 | } 55 | 56 | function process_inputfile(){ 57 | #FUNCTION process_inputfile 58 | #Arguments: 59 | # $1 genome file url 60 | # $2 species code 61 | # $3 Tempfolder 62 | #if the genome does not come from ncbi site, the gbff file is not there ... write it in the log file__ 63 | i=1 64 | stringa="ncbi" 65 | echo $url | grep $stringa >> /dev/null 66 | if [ $? = 0 ] 67 | then 68 | #ncbi site 69 | wget $1.$i.fsa_nt.gz -O $2.fsa.$i.gz 70 | #wget $1.$i.gz -O $2.fsa.$i.gz 71 | size=$(stat -c %s $2.fsa.$i.gz) 72 | echo "SIZE $size" 73 | while [ $size -gt 100 ] 74 | do 75 | echo "Inside while" 76 | if [ $size -lt 100 ] 77 | then 78 | echo "Inside if - then" 79 | writelog "fasta $i size $size" restriction_site_search.log 80 | echo "size < 100 in $i" 81 | rm $2.fsa.$i.gz 82 | else 83 | echo "Inside else" 84 | echo "gunzip $2.fsa.$i.gz" 85 | gunzip $2.fsa.$i.gz 86 | #echo "rm $2.fsa.$i.gz" 87 | #rm $2.fsa.$i.gz 88 | fi; 89 | echo " Increasing i -> $i" 90 | i=$((i+1)) 91 | echo "wget $1.$i.gz -O $2.fsa.$i.gz" 92 | wget $1.$i.gz -O $2.fsa.$i.gz 93 | size=$(stat -c %s $2.fsa.$i.gz) 94 | 95 | done; 96 | writelog "fasta found: $2" restriction_site_search.log 97 | cat $2.fsa.* > $2.fasta 98 | rm $2.fsa.* 99 | tr '[:lower:]' '[:upper:]' < $2.fasta > $2.UP 100 | rm $2.fasta 101 | else 102 | #other site 103 | writelog "fasta not found: $2" restriction_site_search.log 104 | fi; 105 | 106 | } 107 | 108 | function count_nt_sites(){ 109 | #FUNCTION count_nt_sites 110 | #Arguments: 111 | # $1 species code 112 | # $2 patterns filename 113 | # $3 temp foldername 114 | #Count the number of nucleotides in the genome (exclude fasta sequence names), including ambiguities 115 | echo -e -n "$1\t" >> ALL.size.txt 116 | grep -v '[>]' $1.UP | grep -o '[AGCTKMRYSWBVHDN]' | wc -w > $1.txt 117 | #Count the number of nucleotides in the genome (exclude fasta sequence names), excluding ambiguities 118 | grep -v '[>]' $1.UP | grep -o '[AGCT]' | wc -w >> $1.txt 119 | #Count the number of GC nucleotides in the genome, #Count the number of nucleotides in the genome (exclude fasta sequence names), excluding ambiguities 120 | grep -v '[>]' $1.UP | grep -o '[GC]' | wc -w >> $1.txt 121 | while read size; do echo -n -e "$size \t" >> ALL.size.txt; done < $1.txt 122 | echo -e -n '\n' >> ALL.size.txt 123 | echo -n -e 'Counts\t'>> $1.txt 124 | #Count the number of cut sites per enzyme (exclude fasta sequence names) 125 | while read pattern patternname; do eval "grep -o '$pattern' $1.UP | grep -v '[>|.,0123456789]' | wc -w >> $3/$1.count.txt" ; done < $2 126 | while read count; do echo -n -e "$count \t" >> $1.txt; done < $3/$1.count.txt 127 | } 128 | 129 | function pattern_upstream_downstream(){ 130 | #FUNCTION pattern_upstream_downstream 131 | #Arguments: 132 | # $1 speciescode 133 | # $2 pattern 134 | # $3 patternname 135 | # $4 temp foldername 136 | # This function search for recognition sequence patterns in the genome and "sequences" 100bp up- and down-stream of each restriction site 137 | input="$2"; 138 | reverse=""; 139 | len=${#input}; 140 | for (( i=$len-1; i>=0; i-- )) 141 | do 142 | if [ "${input:$i:1}" == "]" ] 143 | then 144 | reverse="$reverse[" 145 | else 146 | if [ "${input:$i:1}" == "[" ] 147 | then reverse="$reverse]" 148 | else 149 | reverse="$reverse${input:$i:1}" 150 | fi; 151 | fi; 152 | done 153 | 154 | eval " 155 | tr -d '\n' < $1.UP > $4/$1_nb 156 | grep -o '$2[AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT]' $4/$1_nb | grep -v '[>|.,0123456789]' > $4/$1_$3_up.txt 157 | rev $4/$1_nb > $4/$1_rev 158 | grep -o '$reverse[AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT][AGCT]' $4/$1_rev | grep -v '[>|.,0123456789]' > $4/$1_$3_down_rev.txt 159 | rev $4/$1_$3_down_rev.txt > $4/$1_$3_down.txt 160 | cat $4/$1_$3_up.txt $4/$1_$3_down.txt > $4/$1_$3_all 161 | " 162 | awk '{print ">Seq"rand()"\n"$0}' $4/$1_$3_all > FASTA/$1.$3.fasta 163 | } 164 | 165 | function extract_bowtie_stats(){ 166 | #FUNCTION extract_bowtie_stats 167 | #Arguments: 168 | scode=$1 169 | pattern=$2 170 | patternname=$3 171 | tempfolder=$4 172 | # This function parses the output of bowtie alignments 173 | tr -d '[a-z,A-z,#:]' < $tempfolder/$scode.$patternname.stats.txt > $tempfolder/$scode.$patternname.stats2.txt; 174 | awk 'BEGIN{FS=" "}NR==1{print $1}' $tempfolder/$scode.$patternname.stats2.txt >> $tempfolder/$scode.processed.txt 175 | awk 'BEGIN{FS=" "}NR==2{print $1}' $tempfolder/$scode.$patternname.stats2.txt >> $tempfolder/$scode.aligned.txt 176 | awk 'BEGIN{FS=" "}NR==3{print $1}' $tempfolder/$scode.$patternname.stats2.txt >> $tempfolder/$scode.failed.txt 177 | awk 'BEGIN{FS=" "}NR==4{print $2}' $tempfolder/$scode.$patternname.stats2.txt >> $tempfolder/$scode.suppressed.txt 178 | } 179 | 180 | function extract_bowtie_stats_by_genome(){ 181 | #FUNCTION extract_bowtie_stats_by_genome 182 | #Arguments: 183 | scode=$1 184 | tempfolder=$2 185 | # This function concatenates the outputs of bowtie alignments for all enzymes per genome 186 | echo -e -n '\nProcessed\t' >> $scode.txt 187 | while read data; do echo -n -e "$data\t" >> $scode.txt; done < $tempfolder/$scode.processed.txt 188 | echo -n -e "\nAligned\t" >> $scode.txt 189 | while read data; do echo -n -e "$data\t" >> $scode.txt; done < $tempfolder/$scode.aligned.txt 190 | echo -n -e "\nFailed\t" >> $scode.txt 191 | while read data; do echo -n -e "$data\t" >> $scode.txt; done < $tempfolder/$scode.failed.txt 192 | echo -n -e "\nSuppressed\t" >> $scode.txt 193 | while read data; do echo -n -e "$data\t" >> $scode.txt; done < $tempfolder/$scode.suppressed.txt 194 | } 195 | 196 | function extract_bowtie_stats_for_all(){ 197 | #FUNCTION extract_bowtie_stats_for_all 198 | #Arguments: 199 | scode=$1 200 | tempfolder=$2 201 | bowtieflag=$3 202 | # This function concatenates the outputs of bowtie alignments for all enzymes for all genomes - and $scode.count.txt 203 | if [ "$bowtieflag" == "YES" ] 204 | then 205 | echo -e -n "\n$scode\t" >> ALL.processed.txt 206 | while read data; do echo -n -e "$data\t" >> ALL.processed.txt; done < $tempfolder/$scode.processed.txt 207 | echo -e -n "\n$scode\t" >> ALL.aligned.txt 208 | while read data; do echo -n -e "$data\t" >> ALL.aligned.txt; done < $tempfolder/$scode.aligned.txt 209 | echo -e -n "\n$scode\t" >> ALL.failed.txt 210 | while read data; do echo -n -e "$data\t" >> ALL.failed.txt; done < $tempfolder/$scode.failed.txt 211 | echo -e -n "\n$scode\t" >> ALL.suppressed.txt 212 | while read data; do echo -n -e "$data\t" >> ALL.suppressed.txt; done < $tempfolder/$scode.suppressed.txt 213 | fi; 214 | echo -e -n "\n$scode\t" >> ALL.count.txt 215 | while read data; do echo -n -e "$data\t" >> ALL.count.txt; done < $tempfolder/$scode.count.txt 216 | } 217 | 218 | #---------------------------------MAIN------------------------------------------- 219 | writelog "--------------------" restriction_site_search.log 220 | # Create directories to store the bowtie databases and the aligned tags against the genome 221 | # default values flags 222 | localfile="NO" 223 | bowtieflag="YES" 224 | mkdir bowtie_db aligned FASTA 225 | tempfolder="TEMP_$(date +"%m_%d_%y_%H_%M")" 226 | mkdir $tempfolder 227 | paramsfile="$1" 228 | . ./$paramsfile 229 | writelog "Input arguments: patternfile $patternfile genomefile $genomefile localfile $localfile bowtieflag $bowtieflag" restriction_site_search.log 230 | # check if files are in other directory and copy to temp directory 231 | # get filename (not the path) 232 | patternfilename=$(basename $patternfile) 233 | #cp $patternfile $tempfolder/$patternfilename 234 | # Sort patterns file 235 | sort -k 2 $patternfile > $tempfolder/$patternfilename.sort 236 | cp $tempfolder/$patternfilename.sort $patternfile 237 | # Check format of input files 238 | check_inputfile $patternfile $tempfolder 239 | check_inputfile $genomefile $tempfolder 240 | # flags 241 | localfile="$(echo -e "${localfile}" | tr -d '[[:space:]]')" 242 | bowtieflag="$(echo -e "${bowtieflag}" | tr -d '[[:space:]]')" 243 | localfile=$(echo $localfile | tr '[a-z]' '[A-Z]') 244 | bowtieflag=$(echo $bowtieflag | tr '[a-z]' '[A-Z]') 245 | # For each assembly file 246 | while read scode url; 247 | do 248 | writelog "$scode process starts" restriction_site_search.log 249 | # Obtain and process each assembly file 250 | # check if there is a local fasta file or we need to download the file from ncbi 251 | if [ "$localfile" == "YES" ] 252 | then 253 | tr '[:lower:]' '[:upper:]' < $url > $scode.UP 254 | # obtain .up file from local file 255 | writelog "local file $url converted to $scode.UP" restriction_site_search.log 256 | else 257 | process_inputfile $url $scode; 258 | fi; 259 | #check scode.UP content 260 | size=$(stat -c %s $scode.UP) 261 | if [ "$?" != "0" ]; 262 | then 263 | #echo "Problem with $scode.UP" 264 | writelog "Error with $scode.UP size" restriction_site_search.log 265 | exit 1 266 | fi; 267 | # Perform initial counts of patterns 268 | count_nt_sites $scode $patternfile $tempfolder ; 269 | # Build bowtie index database for the genome 270 | if [ "$bowtieflag" == "YES" ] 271 | then 272 | cd bowtie_db 273 | bowtie-build -f ../$scode.UP $scode.Genome 274 | if [ "$?" != "0" ]; 275 | then 276 | echo "bowtie-build cannot find input file $url or $scode.UP" 277 | writelog "bowtie-build cannot find input file $url or $scode.UP" restriction_site_search.log 278 | exit 1 279 | fi; 280 | cd .. 281 | writelog "$scode processed files and bowtie index done" restriction_site_search.log 282 | fi; 283 | # Perform in silico RAD sequencing and map reads back to the genome assembly 284 | while read pattern patternname; 285 | do 286 | pattern_upstream_downstream $scode $pattern $patternname $tempfolder; 287 | if [ "$bowtieflag" == "YES" ] 288 | then 289 | writelog "bowtie $scode $patternname" restriction_site_search.log 290 | eval "bowtie -v 3 --best --strata -m 1 -p 8 -f ./bowtie_db/$scode.Genome ./FASTA/$scode.$patternname.fasta ./aligned/$scode.$patternname.bowtie >> $tempfolder/$scode.$patternname.stats.txt 2>&1"; 291 | # Parse alignment outputs 292 | extract_bowtie_stats $scode $pattern $patternname $tempfolder; 293 | fi; 294 | done < $patternfile; 295 | if [ "$bowtieflag" == "YES" ] 296 | then 297 | extract_bowtie_stats_by_genome $scode $tempfolder 298 | writelog "$scode process done" restriction_site_search.log 299 | fi; 300 | rm -rf aligned/* bowtie_db/* FASTA/* 301 | # rm -rf aligned/ bowtie_db/ FASTA/ 302 | rm $scode.UP 303 | done < $genomefile 304 | while read scode url; 305 | do 306 | extract_bowtie_stats_for_all $scode $tempfolder $bowtieflag 307 | writelog "stats for all done" restriction_site_search.log 308 | done < $genomefile 309 | rm -rf aligned/ bowtie_db/ FASTA/ 310 | rm -R $tempfolder 311 | 312 | 313 | -------------------------------------------------------------------------------- /obtain_nucleotides_model.py: -------------------------------------------------------------------------------- 1 | # PredRAD - guides the design of any study using RAD sequencing and related methods. 2 | # 3 | # Created by Santiago Herrera and Paula H. Reyes-Herrera on 11 June 2014 4 | # Copyright (c) 2014 Santiago Herrera and Paula H. Reyes-Herrera. All rights reserved. 5 | # 6 | # This file is part of PredRAD. 7 | # 8 | # PredRAD is free software: you can redistribute it and/or modify 9 | # it under the terms of the GNU General Public License as published by 10 | # the Free Software Foundation, version 2. 11 | #------------------------------------------------------------------------------------- 12 | #!/usr/bin/env python 13 | # Usage: python obtain_nucleotides_model.py genomefilename resultsfile 14 | 15 | #-------------------------------FUNCTIONS-LIST---------------------------------------- 16 | # writelog(filename,text) 17 | # process_inputfile(url, scode, logfile) 18 | # count_nt_freq(scode,filenameall) 19 | # int_main(genomefile,resultfile) 20 | 21 | #---------------------------------FUNCTIONS------------------------------------------- 22 | 23 | def writelog(filename,text): 24 | import os 25 | from datetime import date 26 | import getpass 27 | f = open(filename, 'a+') 28 | now = date.today().ctime() 29 | myhost = os.uname()[1] 30 | user = getpass.getuser() 31 | f.write(str(now)+' '+user+'@'+myhost+'\t'+text+'\n') 32 | f.close() 33 | 34 | def process_inputfile(url, scode, logfile): 35 | #Importing libraries 36 | import os, gzip, StringIO, urllib2 37 | i=1 38 | #Obtain files from web site and concatenate if multiple 39 | if url.count('wgs')>0 : 40 | commandwget='wget '+url+'.'+str(i)+'.fsa_nt.gz -O '+scode+'.fsa.'+str(i)+'.gz' 41 | print commandwget 42 | os.system(commandwget) 43 | size = os.path.getsize(scode+'.fsa.'+str(i)+'.gz') 44 | if size < 100 : 45 | writelog(logfile,'fasta '+scode+' size '+str(size)) 46 | commandrm='rm '+scode+'.fsa.'+str(i)+'.gz' 47 | os.system(commandrm) 48 | if size > 100 : 49 | while size > 100 : 50 | commandgunzip='gunzip '+scode+'.fsa.'+str(i)+'.gz' 51 | os.system(commandgunzip) 52 | commandrm='rm '+scode+'.fsa.'+str(i)+'.gz' 53 | os.system(commandrm) 54 | i=i+1 55 | commandwget='wget '+url+'.'+str(i)+'.gz -O '+scode+'.fsa.'+str(i)+'.gz' 56 | os.system(commandwget) 57 | size = os.path.getsize(scode+'.fsa.'+str(i)+'.gz') 58 | commandcat='cat '+scode+'.fsa.* > '+scode+'.fasta' 59 | os.system(commandcat) 60 | commandrm='rm '+scode+'.fsa.*' 61 | os.system(commandrm) 62 | 63 | elif url.count('assembled_chromosomes')>0 : 64 | commandwget='wget '+url+str(i)+'.fa.gz -O '+scode+'.fsa.'+str(i)+'.gz' 65 | print commandwget 66 | os.system(commandwget) 67 | size = os.path.getsize(scode+'.fsa.'+str(i)+'.gz') 68 | if size < 100 : 69 | writelog(logfile,'fasta '+scode+' size '+str(size)) 70 | commandrm='rm '+scode+'.fsa.'+str(i)+'.gz' 71 | os.system(commandrm) 72 | if size > 100 : 73 | while size > 100 : 74 | commandgunzip='gunzip '+scode+'.fsa.'+str(i)+'.gz' 75 | os.system(commandgunzip) 76 | commandrm='rm '+scode+'.fsa.'+str(i)+'.gz' 77 | os.system(commandrm) 78 | i=i+1 79 | commandwget='wget '+url+str(i)+'.fa.gz -O '+scode+'.fsa.'+str(i)+'.gz' 80 | os.system(commandwget) 81 | commandgunzip='gunzip '+scode+'.fsa.'+str(i)+'.gz' 82 | os.system(commandgunzip) 83 | commandrm='rm '+scode+'.fsa.'+str(i)+'.gz' 84 | os.system(commandrm) 85 | i=i+1 86 | commandwget='wget '+url+str(i)+'.fa.gz -O '+scode+'.fsa.'+str(i)+'.gz' 87 | os.system(commandwget) 88 | size = os.path.getsize(scode+'.fsa.'+str(i)+'.gz') 89 | commandcat='cat '+scode+'.fsa.* > '+scode+'.fasta' 90 | os.system(commandcat) 91 | commandrm='rm '+scode+'.fsa.*' 92 | os.system(commandrm) 93 | 94 | else : 95 | if url.count('gz')>0 : 96 | commandwget='wget '+url+' -O '+scode+'.fasta.gz' 97 | os.system(commandwget) 98 | commandgunzip='gunzip '+scode+'.fasta.gz' 99 | os.system(commandgunzip) 100 | else : 101 | commandwget='wget '+url+' -O '+scode+'.fasta' 102 | os.system(commandwget) 103 | 104 | 105 | def count_nt_freq(scode,url,filenameall,logfile,localfileflag): 106 | #Importing libraries 107 | from Bio import SeqIO 108 | import re 109 | import os 110 | #handling sequences from fasta file 111 | if localfileflag == 'NO' : 112 | handle = open(scode+'.fasta','rU') 113 | else : 114 | if localfileflag == 'YES' : 115 | try: 116 | handle = open(url,'rU') 117 | except IOError: 118 | writelog(logfile,'cannot open '+url) 119 | else: 120 | writelog(logfile,'succesfully open '+url) 121 | countA=0 122 | countT=0 123 | countG=0 124 | countC=0 125 | countN=0 126 | countAA=0 127 | countAG=0 128 | countAC=0 129 | countAT=0 130 | countGA=0 131 | countGG=0 132 | countGC=0 133 | countGT=0 134 | countCA=0 135 | countCG=0 136 | countCC=0 137 | countCT=0 138 | countTA=0 139 | countTG=0 140 | countTC=0 141 | countTT=0 142 | countAAA=0 143 | countAAG=0 144 | countAAC=0 145 | countAAT=0 146 | countAGA=0 147 | countAGG=0 148 | countAGC=0 149 | countAGT=0 150 | countACA=0 151 | countACG=0 152 | countACC=0 153 | countACT=0 154 | countATA=0 155 | countATG=0 156 | countATC=0 157 | countATT=0 158 | countGAA=0 159 | countGAG=0 160 | countGAC=0 161 | countGAT=0 162 | countGGA=0 163 | countGGG=0 164 | countGGC=0 165 | countGGT=0 166 | countGCA=0 167 | countGCG=0 168 | countGCC=0 169 | countGCT=0 170 | countGTA=0 171 | countGTG=0 172 | countGTC=0 173 | countGTT=0 174 | countCAA=0 175 | countCAG=0 176 | countCAC=0 177 | countCAT=0 178 | countCGA=0 179 | countCGG=0 180 | countCGC=0 181 | countCGT=0 182 | countCCA=0 183 | countCCG=0 184 | countCCC=0 185 | countCCT=0 186 | countCTA=0 187 | countCTG=0 188 | countCTC=0 189 | countCTT=0 190 | countTAA=0 191 | countTAG=0 192 | countTAC=0 193 | countTAT=0 194 | countTGA=0 195 | countTGG=0 196 | countTGC=0 197 | countTGT=0 198 | countTCA=0 199 | countTCG=0 200 | countTCC=0 201 | countTCT=0 202 | countTTA=0 203 | countTTG=0 204 | countTTC=0 205 | countTTT=0 206 | countATCG=0 207 | countnt=0 208 | #counting for each record 209 | for record in SeqIO.parse(handle,'fasta') : 210 | #Regular expressions 211 | countnt=countnt+len(re.findall('[AGCTKMRYSWBVHDN]',str(record.seq.upper()))) 212 | countATCG=countATCG+len(re.findall('[AGCT]',str(record.seq.upper()))) 213 | countA=countA+record.seq.upper().count('A') 214 | countG=countG+record.seq.upper().count('G') 215 | countC=countC+record.seq.upper().count('C') 216 | countT=countT+record.seq.upper().count('T') 217 | countN=countN+record.seq.upper().count('N') 218 | countAA=countAA+record.seq.upper().count('AA') 219 | countAG=countAG+record.seq.upper().count('AG') 220 | countAC=countAC+record.seq.upper().count('AC') 221 | countAT=countAT+record.seq.upper().count('AT') 222 | countGA=countGA+record.seq.upper().count('GA') 223 | countGG=countGG+record.seq.upper().count('GG') 224 | countGC=countGC+record.seq.upper().count('GC') 225 | countGT=countGT+record.seq.upper().count('GT') 226 | countCA=countCA+record.seq.upper().count('CA') 227 | countCG=countCG+record.seq.upper().count('CG') 228 | countCC=countCC+record.seq.upper().count('CC') 229 | countCT=countCT+record.seq.upper().count('CT') 230 | countTA=countTA+record.seq.upper().count('TA') 231 | countTG=countTG+record.seq.upper().count('TG') 232 | countTC=countTC+record.seq.upper().count('TC') 233 | countTT=countTT+record.seq.upper().count('TT') 234 | countAAA=countAAA+record.seq.upper().count('AAA') 235 | countAAG=countAAG+record.seq.upper().count('AAG') 236 | countAAC=countAAC+record.seq.upper().count('AAC') 237 | countAAT=countAAT+record.seq.upper().count('AAT') 238 | countAGA=countAGA+record.seq.upper().count('AGA') 239 | countAGG=countAGG+record.seq.upper().count('AGG') 240 | countAGC=countAGC+record.seq.upper().count('AGC') 241 | countAGT=countAGT+record.seq.upper().count('AGT') 242 | countACA=countACA+record.seq.upper().count('ACA') 243 | countACG=countACG+record.seq.upper().count('ACG') 244 | countACC=countACC+record.seq.upper().count('ACC') 245 | countACT=countACT+record.seq.upper().count('ACT') 246 | countATA=countATA+record.seq.upper().count('ATA') 247 | countATG=countATG+record.seq.upper().count('ATG') 248 | countATC=countATC+record.seq.upper().count('ATC') 249 | countATT=countATT+record.seq.upper().count('ATT') 250 | countGAA=countGAA+record.seq.upper().count('GAA') 251 | countGAG=countGAG+record.seq.upper().count('GAG') 252 | countGAC=countGAC+record.seq.upper().count('GAC') 253 | countGAT=countGAT+record.seq.upper().count('GAT') 254 | countGGA=countGGA+record.seq.upper().count('GGA') 255 | countGGG=countGGG+record.seq.upper().count('GGG') 256 | countGGC=countGGC+record.seq.upper().count('GGC') 257 | countGGT=countGGT+record.seq.upper().count('GGT') 258 | countGCA=countGCA+record.seq.upper().count('GCA') 259 | countGCG=countGCG+record.seq.upper().count('GCG') 260 | countGCC=countGCC+record.seq.upper().count('GCC') 261 | countGCT=countGCT+record.seq.upper().count('GCT') 262 | countGTA=countGTA+record.seq.upper().count('GTA') 263 | countGTG=countGTG+record.seq.upper().count('GTG') 264 | countGTC=countGTC+record.seq.upper().count('GTC') 265 | countGTT=countGTT+record.seq.upper().count('GTT') 266 | countCAA=countCAA+record.seq.upper().count('CAA') 267 | countCAG=countCAG+record.seq.upper().count('CAG') 268 | countCAC=countCAC+record.seq.upper().count('CAC') 269 | countCAT=countCAT+record.seq.upper().count('CAT') 270 | countCGA=countCGA+record.seq.upper().count('CGA') 271 | countCGG=countCGG+record.seq.upper().count('CGG') 272 | countCGC=countCGC+record.seq.upper().count('CGC') 273 | countCGT=countCGT+record.seq.upper().count('CGT') 274 | countCCA=countCCA+record.seq.upper().count('CCA') 275 | countCCG=countCCG+record.seq.upper().count('CCG') 276 | countCCC=countCCC+record.seq.upper().count('CCC') 277 | countCCT=countCCT+record.seq.upper().count('CCT') 278 | countCTA=countCTA+record.seq.upper().count('CTA') 279 | countCTG=countCTG+record.seq.upper().count('CTG') 280 | countCTC=countCTC+record.seq.upper().count('CTC') 281 | countCTT=countCTT+record.seq.upper().count('CTT') 282 | countTAA=countTAA+record.seq.upper().count('TAA') 283 | countTAG=countTAG+record.seq.upper().count('TAG') 284 | countTAC=countTAC+record.seq.upper().count('TAC') 285 | countTAT=countTAT+record.seq.upper().count('TAT') 286 | countTGA=countTGA+record.seq.upper().count('TGA') 287 | countTGG=countTGG+record.seq.upper().count('TGG') 288 | countTGC=countTGC+record.seq.upper().count('TGC') 289 | countTGT=countTGT+record.seq.upper().count('TGT') 290 | countTCA=countTCA+record.seq.upper().count('TCA') 291 | countTCG=countTCG+record.seq.upper().count('TCG') 292 | countTCC=countTCC+record.seq.upper().count('TCC') 293 | countTCT=countTCT+record.seq.upper().count('TCT') 294 | countTTA=countTTA+record.seq.upper().count('TTA') 295 | countTTG=countTTG+record.seq.upper().count('TTG') 296 | countTTC=countTTC+record.seq.upper().count('TTC') 297 | countTTT=countTTT+record.seq.upper().count('TTT') 298 | handle.close() 299 | #printing into file 300 | f = open(filenameall,'a') 301 | text=scode+'\t'+str(countnt)+'\t'+str(countATCG) 302 | text=text+'\t'+str(countA)+'\t'+str(countG)+'\t'+str(countC)+'\t'+str(countT)+'\t'+ \ 303 | str(countN)+'\t'+str(countAA)+'\t'+str(countAG)+'\t'+str(countAC)+'\t'+str(countAT)+ \ 304 | '\t'+str(countGA)+'\t'+str(countGG)+'\t'+str(countGC)+'\t'+str(countGT)+'\t'+str(countCA)+ \ 305 | '\t'+str(countCG)+'\t'+str(countCC)+'\t'+str(countCT)+'\t'+str(countTA)+'\t'+str(countTG)+ \ 306 | '\t'+str(countTC)+'\t'+str(countTT)+'\t'+str(countAAA)+'\t'+str(countAAG)+'\t'+str(countAAC)+ \ 307 | '\t'+str(countAAT)+'\t'+str(countAGA)+'\t'+str(countAGG)+'\t'+str(countAGC)+'\t'+str(countAGT)+ \ 308 | '\t'+str(countACA)+'\t'+str(countACG)+'\t'+str(countACC)+'\t'+str(countACT)+'\t'+str(countATA)+ \ 309 | '\t'+str(countATG)+'\t'+str(countATC)+'\t'+str(countATT)+'\t'+str(countGAA)+'\t'+str(countGAG)+ \ 310 | '\t'+str(countGAC)+'\t'+str(countGAT)+'\t'+str(countGGA)+'\t'+str(countGGG)+'\t'+str(countGGC)+ \ 311 | '\t'+str(countGGT)+'\t'+str(countGCA)+'\t'+str(countGCG)+'\t'+str(countGCC)+'\t'+str(countGCT)+ \ 312 | '\t'+str(countGTA)+'\t'+str(countGTG)+'\t'+str(countGTC)+'\t'+str(countGTT)+'\t'+str(countCAA)+ \ 313 | '\t'+str(countCAG)+'\t'+str(countCAC)+'\t'+str(countCAT)+'\t'+str(countCGA)+'\t'+str(countCGG)+ \ 314 | '\t'+str(countCGC)+'\t'+str(countCGT)+'\t'+str(countCCA)+'\t'+str(countCCG)+'\t'+str(countCCC)+ \ 315 | '\t'+str(countCCT)+'\t'+str(countCTA)+'\t'+str(countCTG)+'\t'+str(countCTC)+'\t'+str(countCTT)+ \ 316 | '\t'+str(countTAA)+'\t'+str(countTAG)+'\t'+str(countTAC)+'\t'+str(countTAT)+'\t'+str(countTGA)+ \ 317 | '\t'+str(countTGG)+'\t'+str(countTGC)+'\t'+str(countTGT)+'\t'+str(countTCA)+'\t'+str(countTCG)+ \ 318 | '\t'+str(countTCC)+'\t'+str(countTCT)+'\t'+str(countTTA)+'\t'+str(countTTG)+'\t'+str(countTTC)+ \ 319 | '\t'+str(countTTT)+'\n' 320 | f.write(text) 321 | if localfileflag == 'NO' : 322 | os.remove(scode+'.fasta') 323 | f.close() 324 | 325 | 326 | #MAIN PROGRAM 327 | def int_main(genomefile,resultfile,localfileflag): 328 | import os 329 | from datetime import date 330 | now = date.today() 331 | logfile='genome_nucleotide_distribution_'+str(now) 332 | writelog(logfile,"--------------------") 333 | writelog(logfile,"Input file:"+genomefile+' '+resultfile) 334 | localfileflag=str.upper(localfileflag.strip()) 335 | writelog(logfile,"Input flag:"+localfileflag) 336 | f = open(resultfile, 'a+') 337 | f.write('Species\tnt\tAGCT\tA\tG\tC\tT\tN\tAA\tAG\tAC\tAT\tGA\tGG\ 338 | GC\tGT\tCA\tCG\tCC\tCT\tTA\tTG\tTC\tTT\tAAA\tAAG\tAAC\tAAT\tAGA\tAGG\tAGC\tAGT\tACA\ 339 | ACG\tACC\tACT\tATA\tATG\tATC\tATT\tGAA\tGAG\tGAC\tGAT\tGGA\tGGG\tGGC\tGGT\tGCA\tGCG\ 340 | GCC\tGCT\tGTA\tGTG\tGTC\tGTT\tCAA\tCAG\tCAC\tCAT\tCGA\tCGG\tCGC\tCGT\tCCA\tCCG\tCCC\ 341 | CCT\tCTA\tCTG\tCTC\tCTT\tTAA\tTAG\tTAC\tTAT\tTGA\tTGG\tTGC\tTGT\tTCA\tTCG\tTCC\tTCT\ 342 | TTA\tTTG\tTTC\tTTT\n') 343 | f.close() 344 | g = open(genomefile,'r') 345 | for line in g : 346 | if len(line)>1 : 347 | scode, url = line.split() 348 | url=url.rstrip("\n") 349 | print 'scode '+scode 350 | print 'url ' +url 351 | writelog(logfile,scode+" process starts") 352 | if localfileflag=='NO' : 353 | process_inputfile(url,scode,logfile) 354 | else : 355 | if localfileflag!='YES': 356 | writelog(logfile,"Problems with content Input flag. Must be YES or NO"+localfileflag) 357 | count_nt_freq(scode,url,resultfile,logfile,localfileflag) 358 | g.close() 359 | 360 | 361 | #----------------------------------MAIN------------------------------------------- 362 | 363 | import sys 364 | int_main(sys.argv[1],sys.argv[2],sys.argv[3]) 365 | 366 | 367 | -------------------------------------------------------------------------------- /paper_analyses/gc_matrix.txt: -------------------------------------------------------------------------------- 1 | "id" "gc_content" 2 | "1" "Bignat" 0.448519308235834 3 | "2" "Leibra" 0.577954939765519 4 | "3" "Trycru" 0.517343583496398 5 | "4" "Ectsil" 0.535931496760742 6 | "5" "Aurlim" 0.451668281481777 7 | "6" "Hypcat" 0.494016755138638 8 | "7" "Aurano" 0.695021398883648 9 | "8" "Blahom" 0.452480606155507 10 | "9" "Nangad" 0.542615473476685 11 | "10" "Fracyl" 0.385136012850829 12 | "11" "Psemul" 0.445130874156529 13 | "12" "Phatri" 0.488634918055266 14 | "13" "Thapse" 0.468953143642429 15 | "14" "Albcan" 0.432177607099599 16 | "15" "Pytult" 0.523063314683508 17 | "16" "Sappar" 0.584247133415594 18 | "17" "Phyinf" 0.509654243752247 19 | "18" "Hyaara" 0.472240662000624 20 | "19" "Psecub" 0.540169551504861 21 | "20" "Gialam" 0.492515579178394 22 | "21" "Permar" 0.474117916505304 23 | "22" "Stylem" 0.325072978165923 24 | "23" "Oxytri" 0.313520493312838 25 | "24" "Partet" 0.280601222282585 26 | "25" "Ichmul" 0.159152684034037 27 | "26" "Tetthe" 0.223161794999511 28 | "27" "Hamham" 0.532945161826482 29 | "28" "Toxgon" 0.52278132529402 30 | "29" "Crypa1" 0.30224137040853 31 | "30" "Babbov" 0.4160208561402 32 | "31" "Thepar" 0.340444597142988 33 | "32" "Plaviv" 0.422787227404934 34 | "33" "Cyamer" 0.550181138344732 35 | "34" "Acacas" 0.584117673777393 36 | "35" "Polpal" 0.320748882551322 37 | "36" "Dicdis" 0.22432451234149 38 | "37" "Enthis" 0.242945030071106 39 | "38" "Guithe" 0.531049654567554 40 | "39" "Emihux" 0.656705543053692 41 | "40" "Phypat" 0.335963937973225 42 | "41" "Lacsat" 0.368097887253896 43 | "42" "Sollyc" 0.340522349038128 44 | "43" "Mimgut" 0.354866261593801 45 | "44" "Citlan" 0.328703519713586 46 | "45" "Cucsat" 0.338500430032325 47 | "46" "Linusi" 0.394886453463663 48 | "47" "Poptri" 0.337230872706996 49 | "48" "Manesc" 0.352939854562779 50 | "49" "Jatcur" 0.342923685035168 51 | "50" "Riccom" 0.338402756792055 52 | "51" "Betnan" 0.377004582622201 53 | "52" "Medtru" 0.337413021940489 54 | "53" "Lotjap" 0.384791828293429 55 | "54" "Cajcaj" 0.336817707387081 56 | "55" "Glymax" 0.34753829835246 57 | "56" "Pruper" 0.37450927143959 58 | "57" "Maldom" 0.379925583216671 59 | "58" "Fraves" 0.383973990691552 60 | "59" "Cansat" 0.347949136078538 61 | "60" "Vitvin" 0.345463534065053 62 | "61" "Citsin" 0.340637313171966 63 | "62" "Euccam" 0.392034434345101 64 | "63" "Carpap" 0.352931425544443 65 | "64" "Brarap" 0.352589518456733 66 | "65" "Eutpar" 0.357465069668498 67 | "66" "Aratha" 0.360527287940479 68 | "67" "Thecac" 0.342229985327881 69 | "68" "Gosrai" 0.33214763425755 70 | "69" "Phodac" 0.385738093676798 71 | "70" "Setita" 0.461444945932703 72 | "71" "Zeamay" 0.458250227556951 73 | "72" "Sorbic" 0.439261579193846 74 | "73" "Leeper" 0.431717570574012 75 | "74" "Orysat" 0.438253226440848 76 | "75" "Bradis" 0.464001025705117 77 | "76" "Horvul" 0.443989438821824 78 | "77" "Triaes" 0.435869992431804 79 | "78" "Musacu" 0.38867081128 80 | "79" "Selmoe" 0.452216446973449 81 | "80" "Chlrei" 0.639298946178378 82 | "81" "Volcar" 0.559732629585584 83 | "82" "Ostluc" 0.604372789833583 84 | "83" "Micpus" 0.659436038556266 85 | "84" "Chlvar" 0.671390811474744 86 | "85" "Cocsub" 0.529362085925951 87 | "86" "Ast_sp" 0.577638169567569 88 | "87" "Naegru" 0.331495656590367 89 | "88" "Trivag" 0.328350768974555 90 | "89" "Monbre" 0.548901494944293 91 | "90" "Sal_sp" 0.560084883098712 92 | "91" "Ampque" 0.35824641395089 93 | "92" "Nemvec" 0.406351634486927 94 | "93" "Acrdig" 0.390362217897916 95 | "94" "Hydmag" 0.276262423140191 96 | "95" "Alamos" 0.432564361499004 97 | "96" "Mnelei" 0.388639780990926 98 | "97" "Schmed" 0.299061926392149 99 | "98" "Schman" 0.352081249717992 100 | "99" "Closin" 0.44051828408427 101 | "100" "Patmin" 0.402288794363765 102 | "101" "Lytvar" 0.359992674125909 103 | "102" "Strpur" 0.370124001769756 104 | "103" "Oikdio" 0.397695373807138 105 | "104" "Cioint" 0.35674690836485 106 | "105" "Petmar" 0.458544892906322 107 | "106" "Calmil" 0.428197276544078 108 | "107" "Leueri" 0.425959889671834 109 | "108" "Salsal" 0.426136720882379 110 | "109" "Gadmor" 0.45556856592462 111 | "110" "Orenil" 0.404185688665845 112 | "111" "Neobri" 0.404425902023577 113 | "112" "Mayzeb" 0.395888629489375 114 | "113" "Hapbur" 0.405109012366068 115 | "114" "Labfue" 0.422290126825916 116 | "115" "Mchcon" 0.41852974939697 117 | "116" "Melaur" 0.41583102689925 118 | "117" "Rhaeso" 0.424072037471262 119 | "118" "Punnye" 0.406034290810522 120 | "119" "Diclab" 0.402464055506863 121 | "120" "Tetnig" 0.464297616935401 122 | "121" "Takrub" 0.454612333117275 123 | "122" "Gasacu" 0.44595409522065 124 | "123" "Xipmac" 0.387564950610973 125 | "124" "Orylat" 0.404603617382809 126 | "125" "Danrer" 0.36849730297884 127 | "126" "Lepocu" 0.395888629489375 128 | "127" "Xentro" 0.400581172760413 129 | "128" "Tupbel" 0.413459051853404 130 | "129" "Macfas" 0.406508888848242 131 | "130" "Papanu" 0.409645418935561 132 | "131" "Nomleu" 0.40757660868566 133 | "132" "Gorgor" 0.405319792562303 134 | "133" "Homsap" 0.409008715770162 135 | "134" "Pantro" 0.407610899419693 136 | "135" "Ponabe" 0.406983054923108 137 | "136" "Caljac" 0.408420090958102 138 | "137" "Saibol" 0.40769126824855 139 | "138" "Tarsyr" 0.39864769953997 140 | "139" "Daumad" 0.395874080370008 141 | "140" "Otogar" 0.411137946487879 142 | "141" "Orycun" 0.43748967069891 143 | "142" "Ochpri" 0.433462487482306 144 | "143" "Musmus" 0.417128076961103 145 | "144" "Ratnor" 0.419337069987893 146 | "145" "Crigri" 0.413672403140539 147 | "146" "Micoch" 0.422513624712305 148 | "147" "Spetri" 0.399091915865313 149 | "148" "Dipord" 0.423827551924206 150 | "149" "Jacjac" 0.418719836068725 151 | "150" "Hetgla" 0.402136060615293 152 | "151" "Cavpor" 0.399479737750343 153 | "152" "Octdeg" 0.41382743898991 154 | "153" "Chilan" 0.410644403941154 155 | "154" "Chohof" 0.389438866025669 156 | "155" "Dasnov" 0.407694162528096 157 | "156" "Equcab" 0.415011161682955 158 | "157" "Cersim" 0.408951573821396 159 | "158" "Sorara" 0.428967896046825 160 | "159" "Concri" 0.415478467721696 161 | "160" "Erieur" 0.415386937113223 162 | "161" "Susscr" 0.422562116574782 163 | "162" "Vicpac" 0.396800235066174 164 | "163" "Camfer" 0.412757366808587 165 | "164" "Turtru" 0.415543091345888 166 | "165" "Oviari" 0.41829438578898 167 | "166" "Bostau" 0.41768920189645 168 | "167" "Ptevam" 0.399450242882132 169 | "168" "Myodav" 0.426825340923027 170 | "169" "Eptfus" 0.429308803235617 171 | "170" "Felcat" 0.416987982944894 172 | "171" "Ailmel" 0.41600561281889 173 | "172" "Musput" 0.414773874658729 174 | "173" "Canlup" 0.413077403354732 175 | "174" "Chrasi" 0.400126853561139 176 | "175" "Procap" 0.410749169720847 177 | "176" "Echtel" 0.430053474170567 178 | "177" "Eleedw" 0.402967139815169 179 | "178" "Oryafe" 0.400661298232608 180 | "179" "Loxafr" 0.407618843318485 181 | "180" "Triman" 0.40733007355095 182 | "181" "Mondom" 0.378225552183894 183 | "182" "Maceug" 0.388312295372502 184 | "183" "Sarhar" 0.360442375082439 185 | "184" "Ornana" 0.454836828526756 186 | "185" "Pelsin" 0.444096320823244 187 | "186" "Chrpic" 0.441638331330252 188 | "187" "Anocar" 0.403192229301857 189 | "188" "Pytmol" 0.392032510687258 190 | "189" "Melund" 0.412466265425469 191 | "190" "Ficalb" 0.442177464674095 192 | "191" "Taegut" 0.414203757286002 193 | "192" "Geofor" 0.416023065170561 194 | "193" "Galgal" 0.418721650356721 195 | "194" "Melgal" 0.405176648228244 196 | "195" "Allmis" 0.443632202202772 197 | "196" "Latcha" 0.411509406119159 198 | "197" "Braflo" 0.411937723355563 199 | "198" "Sackow" 0.358561916698494 200 | "199" "Aplcal" 0.40142548362227 201 | "200" "Lotgig" 0.332791212839732 202 | "201" "Pinfuc" 0.352020678841072 203 | "202" "Cragig" 0.334248302924675 204 | "203" "Captel" 0.403906523040069 205 | "204" "Helrob" 0.328204162539162 206 | "205" "Menmol" 0.286944961098116 207 | "206" "Tricas" 0.338497025291565 208 | "207" "Linhum" 0.37655260684267 209 | "208" "Camflo" 0.342682202307254 210 | "209" "Solinv" 0.362199013879577 211 | "210" "Acrech" 0.336497624116497 212 | "211" "Attcep" 0.325755745740881 213 | "212" "Pogbar" 0.364967745920718 214 | "213" "Harsal" 0.451881443006001 215 | "214" "Megrot" 0.441104608853879 216 | "215" "Bomter" 0.375053699702132 217 | "216" "Apimel" 0.326962383794726 218 | "217" "Nasvit" 0.417014205460557 219 | "218" "Dromel" 0.421701810916574 220 | "219" "Lutlon" 0.350118628152101 221 | "220" "Phlpap" 0.33601928317767 222 | "221" "Anogam" 0.441104608853879 223 | "222" "Culqui" 0.441104608853879 224 | "223" "Aedaeg" 0.38268331503565 225 | "224" "Maydes" 0.33164231954691 226 | "225" "Helmel" 0.328353198583897 227 | "226" "Danple" 0.316489839542748 228 | "227" "Bommor" 0.376746801606784 229 | "228" "Mansex" 0.352655337426552 230 | "229" "Acypis" 0.29765052444887 231 | "230" "Rhopro" 0.339479471157869 232 | "231" "Pedhum" 0.274681030073691 233 | "232" "Dappul" 0.407649223665557 234 | "233" "Lepsal" 0.309646034631653 235 | "234" "Strmar" 0.356498865687742 236 | "235" "Teturt" 0.322510835338381 237 | "236" "Vardes" 0.410793315101679 238 | "237" "Metocc" 0.515847171502314 239 | "238" "Ixosca" 0.454375046952607 240 | "239" "Caeele" 0.354396259609591 241 | "240" "Hetbac" 0.333126533089875 242 | "241" "Strrat" 0.249416990659975 243 | "242" "Pripac" 0.426855167695529 244 | "243" "Ascsuu" 0.379598484545732 245 | "244" "Brumal" 0.302134132540662 246 | "245" "Wucban" 0.296968303761419 247 | "246" "Loaloa" 0.309753208252727 248 | "247" "Oncvol" 0.325071270482653 249 | "248" "Melinc" 0.314415942812418 250 | "249" "Hetgly" 0.374980994266105 251 | "250" "Burxyl" 0.403725460242002 252 | "251" "Trispi" 0.339135242470381 253 | "252" "Triadh" 0.32744136501646 254 | "253" "Capowc" 0.53757461315256 255 | "254" "Gonpro" 0.524061034080075 256 | "255" "Batden" 0.392533692361573 257 | "256" "Hompol" 0.497518523769257 258 | "257" "Spipun" 0.47603932869093 259 | "258" "Pir_sp" 0.218179341308318 260 | "259" "Allmac" 0.615890815746318 261 | "260" "Catang" 0.558773052866255 262 | "261" "Concor" 0.276539843101142 263 | "262" "Phybla" 0.357819194297891 264 | "263" "Muccir" 0.421699530505653 265 | "264" "Coerev" 0.451783265882605 266 | "265" "Morelo" 0.481213967612192 267 | "266" "Vavcul" 0.397477787322113 268 | "267" "Hamtva" 0.264573105376489 269 | "268" "Edhaed" 0.224665314280116 270 | "269" "Nempar" 0.344235705481822 271 | "270" "Annalg" 0.254391529745927 272 | "271" "Enccun" 0.469022495402323 273 | "272" "Entbie" 0.337045388352282 274 | "273" "Noscer" 0.252673905305013 275 | "274" "Vitcor" 0.364711830581014 276 | "275" "Sphste" 0.443949976427847 277 | "276" "Jaaarg" 0.497664149129905 278 | "277" "Agabis" 0.464848160351748 279 | "278" "Hypsub" 0.510363385114941 280 | "279" "Galmar" 0.479742502140831 281 | "280" "Amamus" 0.475454952732742 282 | "281" "Ompole" 0.473851031643332 283 | "282" "Pleost" 0.509455691500145 284 | "283" "Gymlux" 0.450784323893487 285 | "284" "Lacbic" 0.469670054842122 286 | "285" "Plicri" 0.537044437916393 287 | "286" "Monper" 0.477400008213633 288 | "287" "Copcin" 0.516402043248442 289 | "288" "Schcom" 0.574959245740441 290 | "289" "Hebcyl" 0.483744515401341 291 | "290" "Pilcro" 0.462844434702972 292 | "291" "Sclcit" 0.486281942783842 293 | "292" "Pismic" 0.489603171262956 294 | "293" "Serlac" 0.453217283872234 295 | "294" "Conput" 0.523965334709655 296 | "295" "Paxrub" 0.479858102679121 297 | "296" "Hydpin" 0.507839069805523 298 | "297" "Suilut" 0.480013720751144 299 | "298" "Aurdel" 0.586276743598297 300 | "299" "Glotra" 0.532347691381918 301 | "300" "Hetirr" 0.522257230015765 302 | "301" "Stehir" 0.513071927283079 303 | "302" "Tulcal" 0.514392787851145 304 | "303" "Botbot" 0.52443211796696 305 | "304" "Sebver" 0.489306963359278 306 | "305" "Pirind" 0.506845982206394 307 | "306" "Fommed" 0.408326042318594 308 | "307" "Phlgig" 0.548207137832064 309 | "308" "Fibrad" 0.511613330537376 310 | "309" "Dicsqu" 0.555594813044131 311 | "310" "Ganluc" 0.561670751870345 312 | "311" "Wolcoc" 0.521678293615734 313 | "312" "Traver" 0.576856945039833 314 | "313" "Pospla" 0.5382890197657 315 | "314" "Fompin" 0.557494129098346 316 | "315" "Cersub" 0.537655305311995 317 | "316" "Bjeadu" 0.548211142285219 318 | "317" "Punstr" 0.551545769362157 319 | "318" "Phlbre" 0.519919602816809 320 | "319" "Phacar" 0.531493622292607 321 | "320" "Triasa" 0.595038305919966 322 | "321" "Crygat" 0.477947018304722 323 | "322" "Tremes" 0.467329788562142 324 | "323" "Dac_sp" 0.522312718812929 325 | "324" "Walseb" 0.400104976097679 326 | "325" "Usthor" 0.521634354257544 327 | "326" "Malglo" 0.520597278374066 328 | "327" "Mixosm" 0.554429745593362 329 | "328" "Rhotor" 0.619235034445246 330 | "329" "Rhoglu" 0.618628258545622 331 | "330" "Sporos" 0.537531133174871 332 | "331" "Micvio" 0.554337168367527 333 | "332" "Pucgra" 0.433486078319916 334 | "333" "Mellar" 0.410021094214978 335 | "334" "Croque" 0.410690937968008 336 | "335" "Schjap" 0.436688507918494 337 | "336" "Saicom" 0.52510869550146 338 | "337" "Tapdef" 0.495612200047428 339 | "338" "Thelan" 0.522331419431175 340 | "339" "Mel_sp" 0.479554789119247 341 | "340" "Conapo" 0.521296416803275 342 | "341" "Artoli" 0.4445181427975 343 | "342" "Tubmel" 0.448589801981124 344 | "343" "Dalesc" 0.464732605223568 345 | "344" "Hyp_sp" 0.404645214664589 346 | "345" "Colglo" 0.535792542600555 347 | "346" "Glogra" 0.491094269244404 348 | "347" "Verdah" 0.557868672113704 349 | "348" "Acralc" 0.464449163160602 350 | "349" "Fusoxy" 0.483745708451143 351 | "350" "Gibmon" 0.486675304532133 352 | "351" "Nechae" 0.507860874781553 353 | "352" "Triree" 0.528245529889025 354 | "353" "Cormil" 0.514183861594476 355 | "354" "Beabas" 0.515079390803273 356 | "355" "Metacr" 0.499119617060888 357 | "356" "Neogan" 0.470288091176417 358 | "357" "Peripo" 0.506428375220985 359 | "358" "Acitak" 0.401471642506412 360 | "359" "Clafus" 0.369284681410396 361 | "360" "Epityp" 0.414774271862408 362 | "361" "Apimon" 0.520163880721404 363 | "362" "Magory" 0.516076050965328 364 | "363" "Gaegra" 0.567908377140944 365 | "364" "Ophcla" 0.487211944655551 366 | "365" "Crypa2" 0.508333129568122 367 | "366" "Grocla" 0.533568685751104 368 | "367" "Sormac" 0.521075400683573 369 | "368" "Neucra" 0.49289789509039 370 | "369" "Mycthe" 0.514552985147512 371 | "370" "Chathe" 0.525921787977851 372 | "371" "Thiter" 0.54709305765543 373 | "372" "Geodes" 0.501162908182077 374 | "373" "Oidmai" 0.471109863717624 375 | "374" "Marbru" 0.429154542863879 376 | "375" "Botfuc" 0.424413641247885 377 | "376" "Sclscl" 0.417876761712236 378 | "377" "Glaloz" 0.461064935268581 379 | "378" "Erypis" 0.391763534300784 380 | "379" "Blugra" 0.439664198781355 381 | "380" "Exoder" 0.515085877886476 382 | "381" "Artben" 0.487484477479961 383 | "382" "Trirub" 0.4828104882644 384 | "383" "Ajecap" 0.461329974041838 385 | "384" "Parbra" 0.443291090541227 386 | "385" "Cocpos" 0.465888615370172 387 | "386" "Uncree" 0.486586252538447 388 | "387" "Ascapi" 0.475904465871971 389 | "388" "Aspfum" 0.49798402968308 390 | "389" "Pendig" 0.488536024407233 391 | "390" "Talmar" 0.466682464806254 392 | "391" "Neofis" 0.495496478628896 393 | "392" "Eurher" 0.487857449107868 394 | "393" "Xanpar" 0.498918232666392 395 | "394" "Clagra" 0.446783481776583 396 | "395" "Didexi" 0.527962686667825 397 | "396" "Coclun" 0.508526390232901 398 | "397" "Settur" 0.514377944520512 399 | "398" "Pyrter" 0.509114462735169 400 | "399" "Altarb" 0.509077581210408 401 | "400" "Phanod" 0.504625965199963 402 | "401" "Aurpul" 0.498168542991874 403 | "402" "Clasph" 0.558743089875034 404 | "403" "Zascel" 0.533550004654625 405 | "404" "Cerzea" 0.484818480107066 406 | "405" "Zymard" 0.537520145270767 407 | "406" "Mycpop" 0.503202214483249 408 | "407" "Baucom" 0.547856183912924 409 | "408" "Macpha" 0.523285973631769 410 | "409" "Aciric" 0.493439175331298 411 | "410" "Clalus" 0.44495434450887 412 | "411" "Metfru" 0.455297025504569 413 | "412" "Hypbur" 0.349856410040445 414 | "413" "Lipsta" 0.46920257837102 415 | "414" "Saccer" 0.382860292753414 416 | "415" "Pactan" 0.298175142638991 417 | "416" "Vanpol" 0.330246768116516 418 | "417" "Klumar" 0.401222550473198 419 | "418" "Naucas" 0.368502041412126 420 | "419" "Dekbru" 0.396214936452939 421 | "420" "Kompas" 0.413432347059092 422 | "421" "Lacklu" 0.415912540328498 423 | "422" "Cybjad" 0.444997673754407 424 | "423" "Wicano" 0.34542419288975 425 | "424" "Pickud" 0.383199292072258 426 | "425" "Canalb" 0.334692871045655 427 | "426" "Ogapar" 0.478646562703138 428 | "427" "Meygui" 0.437627097679106 429 | "428" "Debhan" 0.354247109383949 430 | "429" "Babino" 0.481275654866959 431 | "430" "Spapas" 0.373725738806961 432 | "431" "Lodelo" 0.36944627148692 433 | "432" "Ascrub" 0.328526898292242 434 | "433" "Hanval" 0.267106375132686 435 | "434" "Nadful" 0.392537437456246 436 | -------------------------------------------------------------------------------- /paper_outputs/ALL.size.txt: -------------------------------------------------------------------------------- 1 | Plaviv 27977883 27972476 11841186 2 | Babbov 8173701 8173700 3400431 3 | Thepar 8347606 8347594 2841893 4 | Crypa1 9087724 9083766 2745490 5 | Hamham 67481208 67481162 35963760 6 | Toxgon 62966896 62966896 32917919 7 | Ichmul 48715068 48714950 7753114 8 | Oxytri 67158112 67156729 21055010 9 | Partet 72065651 72065651 20221709 10 | Stylem 27161939 27133452 8820352 11 | Tetthe 102950684 102950683 22974658 12 | Permar 86045674 86045674 40795797 13 | Enthis 20772429 20772429 5046737 14 | Acacas 46431705 46431680 27121567 15 | Dicdis 34182734 34182592 7667835 16 | Polpal 32940433 32940433 10565607 17 | Guithe 83457412 83457412 44320031 18 | Leibra 28851258 28769402 16627418 19 | Trycru 89612356 89612356 46360379 20 | Gialam 11192215 11192174 5512321 21 | Emihux 167727055 156026073 102463187 22 | Naegru 36295316 36295096 12031666 23 | Monbre 38648938 38648792 21214381 24 | Sal_sp 51703572 51703572 28958390 25 | Allmac 52624944 52624944 32411221 26 | Catang 36224255 33009507 18444823 27 | Gonpro 48794828 48252124 25287058 28 | Batden 24130314 24130314 9471962 29 | Hompol 25887166 25887004 12879265 30 | Spipun 23906001 23906001 11380197 31 | Acitak 58836405 58836294 23621104 32 | Aciric 29883570 29877113 14742538 33 | Acralc 54417234 54287836 25213940 34 | Ajecap 30649313 30649313 14139448 35 | Altarb 33889384 33889307 17252287 36 | Apimon 47671174 47652707 24787217 37 | Artoli 39966216 39966211 17765707 38 | Artben 22224160 22224156 10833932 39 | Ascrub 17503998 17461313 5736511 40 | Ascapi 21566106 21565815 10263269 41 | Aspfum 28809958 28809941 14346892 42 | Aurpul 26722706 26722706 13312412 43 | Babino 15221050 15052943 7244615 44 | Baucom 21876451 21865565 11979185 45 | Beabas 33598594 33598532 17305913 46 | Blugra 98268959 98268607 43205189 47 | Botfuc 41335944 41335097 17543179 48 | Canalb 14416413 14416413 4825071 49 | Cerzea 46606380 41701490 20217653 50 | Chathe 28312548 28312470 14890146 51 | Clagra 39606234 38381222 17148096 52 | Clasph 26128862 26128862 14599323 53 | Clafus 52585647 52585513 19419025 54 | Clalus 12079919 12079919 5375014 55 | Cocpos 27013412 27013379 12585226 56 | Coclun 31171894 31112287 15821419 57 | Colglo 55393111 55393111 29679217 58 | Conapo 28506104 28506104 14860131 59 | Cormil 32212078 32212061 16562923 60 | Crypa2 43870411 43800411 22265200 61 | Cybjad 13693733 13693733 6093680 62 | Dalesc 35842392 35842392 16657129 63 | Debhan 11462343 11462343 4060502 64 | Dekbru 12676548 12319840 4881305 65 | Didexi 34389227 33658318 17770336 66 | Epityp 41438641 41438625 17187676 67 | Erypis 69261028 69226675 27120486 68 | Eurher 26209327 26075740 12721244 69 | Exoder 26372207 26372207 13583953 70 | Fusoxy 60011252 60011252 29030187 71 | Gaegra 40978577 40978414 23271986 72 | Geodes 28356969 28356622 14211371 73 | Gibmon 41794269 41794269 20340240 74 | Glaloz 38561775 38561580 17772446 75 | Glotra 37181821 34432720 18330179 76 | Glogra 50906596 50906596 24999938 77 | Grocla 29128742 29128509 15542061 78 | Hanval 11464179 9686418 2587304 79 | Hypbur 12403110 12347660 4319908 80 | Hyp_sp 46585682 46575544 18846571 81 | Klumar 10845407 10845354 4351401 82 | Kompas 9405451 9405423 3888506 83 | Lacklu 11536294 11536189 4798046 84 | Lipsta 21267709 20680189 9703198 85 | Lodelo 15460620 15460620 5711869 86 | Macpha 48882845 48882833 25579702 87 | Magory 40949933 40949933 21133314 88 | Marbru 51717277 51717127 22194640 89 | Mel_sp 58516921 58370002 27991614 90 | Metacr 38045938 38045938 18989475 91 | Metfru 24482224 24478902 11145172 92 | Meygui 10574537 10574537 4627705 93 | Mycpop 32109499 32109336 16157490 94 | Nadful 13746944 13683021 5371098 95 | Naucas 11242286 11241965 4142687 96 | Nechae 51230363 51230360 26017896 97 | Neofis 32542611 32542611 16086763 98 | Neogan 29675754 29675738 13956147 99 | Neucra 39225835 39223435 19333150 100 | Ogapar 8862525 8862525 4242018 101 | Oidmai 46426256 46243984 21785997 102 | Ophcla 15906360 15905617 7749407 103 | Pactan 12237881 12237881 3649031 104 | Parbra 29439257 29439257 13050161 105 | Pendig 25634646 25633377 12522829 106 | Peripo 35301553 35301527 17877696 107 | Phanod 37071111 37071111 18692570 108 | Pickud 10448518 10448518 4003865 109 | Pyrter 33578616 33578276 17095187 110 | Saccer 11906055 11906054 4558355 111 | Saicom 12981880 12981671 6816789 112 | Schjap 11011113 11011113 4808428 113 | Sclscl 38203946 38203946 15964542 114 | Settur 43014577 38252408 19676195 115 | Sormac 38391383 38253120 19932761 116 | Spapas 13079731 13079730 4888232 117 | Talmar 28467480 28467480 13285275 118 | Tapdef 13241258 13241253 6562527 119 | Thelan 19155516 19155449 10005494 120 | Thiter 36912256 36912256 20194439 121 | Triree 33348748 33348438 17616165 122 | Trirub 22127963 22127963 10683613 123 | Tubmel 123595685 123595685 55443764 124 | Uncree 22168071 22168071 10786680 125 | Vanpol 14661591 14661490 4841910 126 | Verdah 32974986 32974986 18395713 127 | Wicano 25465570 25465566 8796422 128 | Xanpar 31900637 31799814 15865507 129 | Zascel 38247703 38198564 20380844 130 | Zymard 31136334 31136334 16736408 131 | Agabis 30028778 30028778 13958823 132 | Amamus 40699759 35829876 17035492 133 | Aurdel 69053432 69053342 40484370 134 | Bjeadu 42730300 40229611 22054321 135 | Botbot 46674321 45748674 23992074 136 | Cersub 37873962 37873940 20363126 137 | Conput 41864241 41864232 21935408 138 | Copcin 36192590 36192556 18689911 139 | Croque 76567842 59195068 24310878 140 | Crygat 17161958 17161958 8202508 141 | Dac_sp 27600935 27600911 14416308 142 | Dicsqu 39457462 39457434 21922347 143 | Fibrad 28216918 28216918 14436151 144 | Fommed 56770801 56770784 23180990 145 | Fompin 41614358 39599965 22076748 146 | Galmar 59418196 57882889 27768882 147 | Ganluc 43121057 43121057 24219838 148 | Gymlux 66281680 65218082 29399289 149 | Hebcyl 38226047 36208210 17515523 150 | Hetirr 33649644 33649644 17573771 151 | Hydpin 38278792 35273828 17913428 152 | Hypsub 48031814 46505895 23734906 153 | Jaaarg 45045919 43275237 21536534 154 | Lacbic 58683330 58682807 27561558 155 | Malglo 8958118 8958094 4663561 156 | Mellar 97682699 97682699 40051967 157 | Micvio 25201507 25201160 13969941 158 | Mixosm 13393708 13393708 7425872 159 | Monper 26663261 26638632 12717284 160 | Mycthe 38744216 38744216 19935952 161 | Ompole 27923065 27923065 13231374 162 | Paxrub 53011005 52978872 25422341 163 | Phacar 43133528 43133362 22925108 164 | Phlbre 49963746 46431975 24140894 165 | Phlgig 30143925 29699606 16281536 166 | Pilcro 59326866 52312419 24212512 167 | Pirind 24979980 24767878 12553500 168 | Pismic 53027657 47449613 23231481 169 | Pleost 34343005 34342914 17496193 170 | Plicri 34498416 33356897 17914136 171 | Pospla 68983789 68982930 37132755 172 | Pucgra 81600488 81600488 35372676 173 | Punstr 33070072 33070030 18239636 174 | Rhotor 20054452 20053995 12418138 175 | Rhoglu 20303037 20301881 12559319 176 | Schcom 37930385 37930385 21808427 177 | Sclcit 56144862 52726854 25640117 178 | Sebver 38094242 35468269 17354871 179 | Serlac 42400076 42400076 19216448 180 | Sphste 176372157 122311697 54300275 181 | Sporos 21172659 20840711 11202531 182 | Stehir 45647489 45647470 23420436 183 | Suilut 37014302 36933838 17728749 184 | Traver 42885174 42885162 24738605 185 | Tremes 27987508 27987508 13079397 186 | Triasa 25047690 25047689 14904336 187 | Tulcal 62392858 52040856 26769441 188 | Usthor 21150702 20132763 10501941 189 | Walseb 9798416 9798415 3920395 190 | Wolcoc 50483556 48243811 25167749 191 | Concor 39903661 31710747 8769285 192 | Coerev 21838014 20641734 9325590 193 | Morelo 49959475 48698202 23434255 194 | Muccir 36587022 36587022 15428730 195 | Phybla 53939167 53368881 19096410 196 | Annalg 13823425 13803782 3511564 197 | Enccun 2288106 2288106 1073174 198 | Entbie 3859738 3859221 1300732 199 | Noscer 7860219 7860219 1986071 200 | Vitcor 3148737 3148732 1148380 201 | Edhaed 50748835 50748798 11401494 202 | Nempar 4029057 4029056 1386945 203 | Hamtva 13270809 13270809 3511098 204 | Vavcul 6033837 6033822 2398310 205 | Pir_sp 71019055 42788547 9335577 206 | Danrer 1400912823 1400898531 516227330 207 | Diclab 98228070 98225540 39532249 208 | Gadmor 608029870 608021859 276995647 209 | Gasacu 446610788 446610788 199167911 210 | Hapbur 698949643 698949643 283150800 211 | Labfue 69311711 69087766 29175082 212 | Lepocu 869401519 869401519 344186177 213 | Mayzeb 869401519 869401519 344186177 214 | Mchcon 71391535 71200849 29799674 215 | Melaur 66502931 66300393 27569761 216 | Neobri 685907315 685907315 277398685 217 | Orenil 816068047 816068047 329843026 218 | Orylat 700369883 700369883 283372189 219 | Punnye 698761080 698761080 283720960 220 | Rhaeso 69833323 69616652 29522476 221 | Salsal 2435040521 2434978485 1037633747 222 | Takrub 350961426 350945394 159544105 223 | Tetnig 342403326 312394419 145043985 224 | Xipmac 652813803 652809671 253006148 225 | Oikdio 66533093 66532959 26459850 226 | Cioint 116731843 113192845 40381198 227 | Calmil 768532130 768532130 329083366 228 | Leueri 1555444314 1555443962 662556739 229 | Braflo 480405935 480398260 197894166 230 | Petmar 647351933 647351933 296839923 231 | Ailmel 2245296026 2245296026 934055750 232 | Allmis 2129643287 2128703477 944361412 233 | Anocar 1701336547 1701336547 685965676 234 | Bostau 3247500072 3247479727 1356437780 235 | Caljac 2762736592 2762736592 1128357126 236 | Camfer 1985426126 1985399753 819488374 237 | Canlup 2392698509 2392698509 988369688 238 | Cavpor 2663352932 2663352932 1063955530 239 | Cersim 2366841180 2366841180 967923426 240 | Chilan 2284276400 2284276400 938025320 241 | Chohof 2060419685 2060419685 802407506 242 | Chrpic 2158295439 2158291820 953184398 243 | Chrasi 3363547664 3363547664 1345845744 244 | Concri 1682547005 1682547005 699062052 245 | Crigri 2318115958 2318115958 958940600 246 | Dasnov 3299865003 3299864972 1345335683 247 | Daumad 2855365987 2847950959 1127429967 248 | Dipord 1844961421 1844961421 781945483 249 | Echtel 2605179812 2605179812 1120366630 250 | Eleedw 3315871847 3315871847 1336187394 251 | Eptfus 1811380956 1811380956 777641791 252 | Equcab 2428773513 2428773513 1007968118 253 | Erieur 2333056088 2333056088 969121023 254 | Felcat 2350804224 2350804224 980257112 255 | Ficalb 1102340840 1102338849 487429398 256 | Galgal 942297987 942294698 394559192 257 | Geofor 1041286029 1041286029 433199006 258 | Gorgor 2829709756 2829687208 1146928232 259 | Hetgla 2314754717 2314754717 930846343 260 | Homsap 2831796747 2831796673 1158229521 261 | Jacjac 2470250781 2470250781 1034343002 262 | Latcha 2183576361 2183576361 898562212 263 | Loxafr 3118542542 3118542542 1271176703 264 | Macfas 2608585756 2579227905 1048479069 265 | Maceug 2594098366 2594098131 1007320200 266 | Melgal 936087475 936087475 379280786 267 | Melund 1086602023 1086596622 448184451 268 | Micoch 2104321675 2104321675 889104579 269 | Mondom 3501643220 3501643220 1324410939 270 | Musmus 2279058378 2279058378 950659239 271 | Musput 2325201281 2325201281 964432745 272 | Myodav 1878461987 1878461987 801775179 273 | Nomleu 2756609047 2756609047 1123529363 274 | Ochpri 1943976257 1943976257 842640785 275 | Octdeg 2526244269 2526244269 1045429197 276 | Ornana 1845138729 1845137433 839098513 277 | Oryafe 3415323805 3415323805 1368388070 278 | Orycun 2604006039 2604006039 1139225745 279 | Otogar 2359530453 2359530453 970092506 280 | Oviari 2534327564 2534319250 1060091514 281 | Pantro 2839871615 2839835349 1157547838 282 | Papanu 2893254271 2893250291 1185206728 283 | Pelsin 2106622020 2106622020 935543088 284 | Ponabe 3093772766 3093743565 1259101204 285 | Procap 2407847681 2407847681 989021434 286 | Ptevam 1839436660 1839436660 734763421 287 | Pytmol 1149420174 1149420174 450610077 288 | Ratnor 2573346531 2572837410 1078886102 289 | Saibol 2477131095 2477131095 1009904717 290 | Sarhar 2931539806 2931539702 1056651133 291 | Sorara 2192103426 2192103426 940341996 292 | Spetri 2311060300 2311060300 922325483 293 | Susscr 243609780 243565742 102921656 294 | Taegut 1222847868 1222847868 506508182 295 | Tarsyr 2768536343 2768536343 1103670644 296 | Triman 2769082795 2769082795 1127930699 297 | Tupbel 2137225476 2137225476 883655219 298 | Turtru 2332406929 2332386055 969206912 299 | Vicpac 1922910435 1922910435 763011313 300 | Xentro 1365919137 1365919137 547161490 301 | Acrdig 364965393 364965393 142468700 302 | Nemvec 356613585 297391672 120845592 303 | Alamos 1544153083 1544153083 667945593 304 | Hydmag 1189606931 1189606931 328643693 305 | Mnelei 155865547 150338246 58427423 306 | Patmin 811028858 770229090 309854532 307 | Lytvar 951759914 823137270 296323387 308 | Strpur 936564995 815936258 301997593 309 | Sackow 642223875 642223819 230277003 310 | Cragig 491850583 491850583 164400223 311 | Lotgig 359512207 298901570 99471816 312 | Pinfuc 1413178538 1026542248 361364099 313 | Aplcal 619213981 619213981 248568272 314 | Ascsuu 262590036 262590036 99678780 315 | Brumal 89286896 89227938 27259735 316 | Burxyl 73085728 73085728 29506569 317 | Caeele 100286002 100286002 35540984 318 | Hetgly 80826242 80778247 30290308 319 | Hetbac 74356772 74356772 24770213 320 | Loaloa 87527535 87526577 27111673 321 | Melinc 82095019 82095019 25811982 322 | Oncvol 25993098 25992171 8449308 323 | Pripac 133635077 133634773 57042694 324 | Strrat 52638471 52627365 13126157 325 | Wucban 81509233 81507962 24205281 326 | Trispi 58541486 58538484 19852463 327 | Triadh 94749416 94748975 31024733 328 | Closin 547104041 547104041 241009334 329 | Schman 364527760 362491922 127625050 330 | Schmed 865587040 865581001 258862322 331 | Ampque 166679601 144846385 51890698 332 | Helrob 235378343 215437877 70707608 333 | Captel 333717402 277014850 111887853 334 | Ixosca 1895741386 1895741386 861377582 335 | Metocc 151298912 151298792 78047055 336 | Teturt 89600102 89600102 28897003 337 | Vardes 294133941 294130181 120826712 338 | Strmar 173602052 173599458 61888010 339 | Lepsal 790051552 789948941 244604557 340 | Dappul 158609466 158607408 64656186 341 | Acrech 288510352 288510352 97083048 342 | Acypis 512050927 512050864 152412208 343 | Aedaeg 1310090344 1310090344 501350066 344 | Anogam 328942838 313831009 138432306 345 | Apimel 229107307 229105558 74908899 346 | Attcep 290222151 290210957 94537887 347 | Bomter 236382229 236381658 88655815 348 | Bommor 431707935 431707935 162644584 349 | Camflo 224523124 224523124 76940079 350 | Culqui 328942838 313831009 138432306 351 | Danple 272853388 272279872 86173813 352 | Dromel 137586636 132715818 55957824 353 | Harsal 283007741 283007741 127885947 354 | Helmel 269658870 269658560 88543250 355 | Linhum 213270824 213270824 80307685 356 | Lutlon 142772392 142771332 49986903 357 | Mansex 399655158 399654982 140940463 358 | Maydes 153138701 153138503 50787208 359 | Megrot 328942838 313831009 138432306 360 | Menmol 155727465 155727027 44685085 361 | Nasvit 239649738 239649738 99937346 362 | Pedhum 108367968 108367968 29766625 363 | Phlpap 345389541 345389541 116057546 364 | Pogbar 220070452 220070452 80318617 365 | Rhopro 561474548 561474548 190609082 366 | Solinv 354729383 354726649 128481643 367 | Tricas 152101721 152101715 51531014 368 | Capowc 27512066 27512066 14789789 369 | Trivag 178315610 178312524 58549054 370 | Bignat 91405885 91405885 40997305 371 | Phatri 24612623 24612619 12026586 372 | Fracyl 80540407 76203645 29348768 373 | Psemul 218730801 200092025 89067138 374 | Thapse 29453142 29453136 13812142 375 | Blahom 18743709 18743698 8481160 376 | Nangad 30348114 30348066 16467331 377 | Hypcat 85142588 85142588 42061865 378 | Aurlim 60926267 59990356 27095741 379 | Albcan 32990475 32990475 14257744 380 | Hyaara 70263580 70263251 33181165 381 | Psecub 64332776 64332776 34750608 382 | Phyinf 190133476 190133476 96902335 383 | Pytult 42791458 42791458 22382643 384 | Sappar 48177014 48177014 28147283 385 | Aurano 50871901 50871572 35356833 386 | Ectsil 191106465 191105934 102419690 387 | Cyamer 16546747 16546745 9103707 388 | Chlrei 105192443 105191821 67248784 389 | Volcar 125467762 125465782 70227293 390 | Micpus 21706984 21706866 14314291 391 | Ostluc 13204888 13204888 7980675 392 | Ast_sp 56144531 55755874 32206721 393 | Chlvar 42214557 42214406 28342366 394 | Cocsub 48826616 48826616 25846960 395 | Aratha 90266344 90252920 32538641 396 | Betnan 564011153 520120111 196087665 397 | Bradis 270783473 270783473 125643810 398 | Brarap 273071614 273071614 96282189 399 | Cajcaj 510809477 510808910 172049486 400 | Cansat 530612410 530612404 184626127 401 | Carpap 271732855 271732855 95903064 402 | Citlan 321046825 321046825 105529220 403 | Citsin 301071380 301071380 102556146 404 | Cucsat 225883302 225872548 76457954 405 | Euccam 654922307 654906830 256746029 406 | Eutpar 137069909 137069906 48997704 407 | Fraves 201882818 201879410 77516443 408 | Glymax 955050802 955050802 331916730 409 | Gosrai 747964930 747964930 248434782 410 | Horvul 1868644920 1817652501 807018514 411 | Jatcur 285858490 285760317 97993981 412 | Lacsat 1133657130 1133657130 417296795 413 | Leeper 16164379 16164372 6978444 414 | Linusi 282201865 282201865 111437694 415 | Lotjap 147812252 147812252 56876947 416 | Maldom 871560583 865417942 328794416 417 | Manesc 532507280 418913257 147851184 418 | Medtru 418579702 366513839 123666542 419 | Mimgut 321726589 300666399 106696361 420 | Musacu 390578572 390481774 151768867 421 | Orysat 374226283 374221869 164003942 422 | Phodac 366606360 366606033 141413912 423 | Phypat 453929394 453927448 152503253 424 | Poptri 427315334 427311819 144102738 425 | Pruper 212828700 212828700 79706321 426 | Riccom 352267603 352266516 122334745 427 | Selmoe 208528962 208528962 94300227 428 | Setita 400910454 400910454 184998103 429 | Sollyc 737636465 737636348 251181662 430 | Sorbic 697579687 697579687 306419955 431 | Thecac 291427191 291426886 99735017 432 | Triaes 159087195 159084148 69340007 433 | Vitvin 470268414 470267649 162466758 434 | Zeamay 177051422 176978766 81100560 -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | GNU GENERAL PUBLIC LICENSE 2 | Version 2, June 1991 3 | 4 | Copyright (C) 1989, 1991 Free Software Foundation, Inc., 5 | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA 6 | Everyone is permitted to copy and distribute verbatim copies 7 | of this license document, but changing it is not allowed. 8 | 9 | Preamble 10 | 11 | The licenses for most software are designed to take away your 12 | freedom to 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Each time you redistribute the Program (or any work based on the 190 | Program), the recipient automatically receives a license from the 191 | original licensor to copy, distribute or modify the Program subject to 192 | these terms and conditions. You may not impose any further 193 | restrictions on the recipients' exercise of the rights granted herein. 194 | You are not responsible for enforcing compliance by third parties to 195 | this License. 196 | 197 | 7. If, as a consequence of a court judgment or allegation of patent 198 | infringement or for any other reason (not limited to patent issues), 199 | conditions are imposed on you (whether by court order, agreement or 200 | otherwise) that contradict the conditions of this License, they do not 201 | excuse you from the conditions of this License. If you cannot 202 | distribute so as to satisfy simultaneously your obligations under this 203 | License and any other pertinent obligations, then as a consequence you 204 | may not distribute the Program at all. For example, if a patent 205 | license would not permit royalty-free redistribution of the Program by 206 | all those who receive copies directly or indirectly through you, then 207 | the only way you could satisfy both it and this License would be to 208 | refrain entirely from distribution of the Program. 209 | 210 | If any portion of this section is held invalid or unenforceable under 211 | any particular circumstance, the balance of the section is intended to 212 | apply and the section as a whole is intended to apply in other 213 | circumstances. 214 | 215 | It is not the purpose of this section to induce you to infringe any 216 | patents or other property right claims or to contest validity of any 217 | such claims; this section has the sole purpose of protecting the 218 | integrity of the free software distribution system, which is 219 | implemented by public license practices. Many people have made 220 | generous contributions to the wide range of software distributed 221 | through that system in reliance on consistent application of that 222 | system; it is up to the author/donor to decide if he or she is willing 223 | to distribute software through any other system and a licensee cannot 224 | impose that choice. 225 | 226 | This section is intended to make thoroughly clear what is believed to 227 | be a consequence of the rest of this License. 228 | 229 | 8. If the distribution and/or use of the Program is restricted in 230 | certain countries either by patents or by copyrighted interfaces, the 231 | original copyright holder who places the Program under this License 232 | may add an explicit geographical distribution limitation excluding 233 | those countries, so that distribution is permitted only in or among 234 | countries not thus excluded. In such case, this License incorporates 235 | the limitation as if written in the body of this License. 236 | 237 | 9. The Free Software Foundation may publish revised and/or new versions 238 | of the General Public License from time to time. Such new versions will 239 | be similar in spirit to the present version, but may differ in detail to 240 | address new problems or concerns. 241 | 242 | Each version is given a distinguishing version number. If the Program 243 | specifies a version number of this License which applies to it and "any 244 | later version", you have the option of following the terms and conditions 245 | either of that version or of any later version published by the Free 246 | Software Foundation. If the Program does not specify a version number of 247 | this License, you may choose any version ever published by the Free Software 248 | Foundation. 249 | 250 | 10. If you wish to incorporate parts of the Program into other free 251 | programs whose distribution conditions are different, write to the author 252 | to ask for permission. For software which is copyrighted by the Free 253 | Software Foundation, write to the Free Software Foundation; we sometimes 254 | make exceptions for this. Our decision will be guided by the two goals 255 | of preserving the free status of all derivatives of our free software and 256 | of promoting the sharing and reuse of software generally. 257 | 258 | NO WARRANTY 259 | 260 | 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY 261 | FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN 262 | OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES 263 | PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED 264 | OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF 265 | MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS 266 | TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE 267 | PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, 268 | REPAIR OR CORRECTION. 269 | 270 | 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING 271 | WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR 272 | REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, 273 | INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING 274 | OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED 275 | TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY 276 | YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER 277 | PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE 278 | POSSIBILITY OF SUCH DAMAGES. 279 | 280 | END OF TERMS AND CONDITIONS 281 | 282 | How to Apply These Terms to Your New Programs 283 | 284 | If you develop a new program, and you want it to be of the greatest 285 | possible use to the public, the best way to achieve this is to make it 286 | free software which everyone can redistribute and change under these terms. 287 | 288 | To do so, attach the following notices to the program. It is safest 289 | to attach them to the start of each source file to most effectively 290 | convey the exclusion of warranty; and each file should have at least 291 | the "copyright" line and a pointer to where the full notice is found. 292 | 293 | {description} 294 | Copyright (C) {year} {fullname} 295 | 296 | This program is free software; you can redistribute it and/or modify 297 | it under the terms of the GNU General Public License as published by 298 | the Free Software Foundation; either version 2 of the License, or 299 | (at your option) any later version. 300 | 301 | This program is distributed in the hope that it will be useful, 302 | but WITHOUT ANY WARRANTY; without even the implied warranty of 303 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 304 | GNU General Public License for more details. 305 | 306 | You should have received a copy of the GNU General Public License along 307 | with this program; if not, write to the Free Software Foundation, Inc., 308 | 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. 309 | 310 | Also add information on how to contact you by electronic and paper mail. 311 | 312 | If the program is interactive, make it output a short notice like this 313 | when it starts in an interactive mode: 314 | 315 | Gnomovision version 69, Copyright (C) year name of author 316 | Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. 317 | This is free software, and you are welcome to redistribute it 318 | under certain conditions; type `show c' for details. 319 | 320 | The hypothetical commands `show w' and `show c' should show the appropriate 321 | parts of the General Public License. Of course, the commands you use may 322 | be called something other than `show w' and `show c'; they could even be 323 | mouse-clicks or menu items--whatever suits your program. 324 | 325 | You should also get your employer (if you work as a programmer) or your 326 | school, if any, to sign a "copyright disclaimer" for the program, if 327 | necessary. Here is a sample; alter the names: 328 | 329 | Yoyodyne, Inc., hereby disclaims all copyright interest in the program 330 | `Gnomovision' (which makes passes at compilers) written by James Hacker. 331 | 332 | {signature of Ty Coon}, 1 April 1989 333 | Ty Coon, President of Vice 334 | 335 | This General Public License does not permit incorporating your program into 336 | proprietary programs. If your program is a subroutine library, you may 337 | consider it more useful to permit linking proprietary applications with the 338 | library. If this is what you want to do, use the GNU Lesser General 339 | Public License instead of this License. -------------------------------------------------------------------------------- /paper_outputs/ALL.failed.txt: -------------------------------------------------------------------------------- 1 | Plaviv 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 | Babbov 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 | Thepar 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 | Crypa1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 | Hamham 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 | Toxgon 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 | Ichmul 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 | Oxytri 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 | Partet 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 | Stylem 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 | Tetthe 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 | Permar 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 | Enthis 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 | Acacas 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 | Dicdis 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1171 95 192 1233 22 2650 1894 386 94 36 1 113 358 111 142 12 11 56 | Coclun 2 38 20 7 111 6 138 203 114 12 8 1 1 32 14 33 4 1 57 | Colglo 36 31 57 15 170 4 70 100 183 12 13 1 17 74 31 28 1 4 58 | Conapo 8 192 46 52 125 16 894 1239 182 2 6 1 1 36 14 10 2 1 59 | Cormil 1 190 11 19 13 4 392 485 14 1 2 1 1 13 13 1 1 1 60 | Crypa2 64 540 422 178 1709 64 1594 1228 1265 194 141 6 119 438 41 249 4 31 61 | Cybjad 225 1332 610 338 3252 263 3809 2679 1575 388 103 2 277 859 321 319 14 78 62 | Dalesc 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 63 | Debhan 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 64 | Dekbru 6 138 8 31 157 12 326 402 26 1 2 1 11 79 10 1 1 1 65 | Didexi 54 406 509 120 1927 366 2665 3360 1039 149 303 104 38 711 146 790 31 109 66 | Epityp 2 3031 21 278 576 127 14427 18523 233 12 8 1 31 414 139 60 7 6 67 | Erypis 1430 37844 4909 5788 44669 2029 89377 75649 19178 3479 1033 109 4510 11458 4060 3310 105 245 68 | Eurher 17 567 131 199 1506 45 1663 1261 647 132 46 1 210 363 77 134 1 26 69 | Exoder 12 63 26 12 91 23 229 239 93 8 14 1 8 32 6 8 1 1 70 | Fusoxy 3346 24662 17725 6793 77304 4500 71351 55213 54133 7639 6226 350 7228 21616 5852 8709 438 1193 71 | Gaegra 177 932 932 99 1449 109 2321 2212 2356 174 422 19 144 440 74 163 20 96 72 | Geodes 126 1477 517 520 4469 206 5006 4162 1947 330 170 2 432 1107 410 406 13 24 73 | Gibmon 8 520 128 80 439 13 1243 1119 497 33 30 1 72 135 22 37 7 16 74 | Glaloz 1 1 1 1 2 1 1 4 2 1 1 1 1 1 1 1 1 1 75 | Glotra 567 2880 2275 687 10018 496 8488 5335 8412 914 623 35 1148 3050 1001 1228 70 248 76 | Glogra 9 1396 133 295 337 106 6265 8234 341 29 40 13 14 145 27 32 1 14 77 | Grocla 120 281 276 76 560 6 931 1416 661 50 77 8 66 209 14 72 2 38 78 | Hanval 37 2430 83 235 1521 38 5154 4703 244 117 8 0 165 357 204 95 6 2 79 | Hypbur 8 70 10 22 92 2 170 143 24 4 1 1 12 8 2 4 1 1 80 | Hyp_sp 1 382 5 1 48 8 889 963 22 5 1 1 4 26 12 5 1 1 81 | Klumar 34 105 56 32 221 35 311 271 147 47 2 1 21 51 12 20 1 2 82 | Kompas 1 8 1 2 22 1 36 14 15 2 1 1 7 4 2 6 1 1 83 | Lacklu 201 639 719 141 2016 162 1739 1182 1760 204 197 8 134 640 187 401 44 75 84 | Lipsta 223 1453 619 279 2886 263 4393 3123 2006 337 174 35 233 834 189 326 2 66 85 | Lodelo 91 939 243 134 1677 55 3132 2499 817 190 22 1 361 396 97 123 26 24 86 | Macpha 48 390 276 137 667 32 1257 1260 845 59 109 6 51 193 55 91 1 27 87 | Magory 1432 11112 8582 2805 13357 1482 24556 20489 24173 2209 2932 168 545 3101 511 2139 638 528 88 | Marbru 16 660 40 175 318 10 1810 2037 132 84 2 10 37 127 25 30 1 1 89 | Mel_sp 1 498 50 31 118 8 1377 1354 155 6 42 1 1 21 21 22 1 6 90 | Metacr 146 2484 954 311 4241 242 7535 7850 2700 476 385 22 456 1371 469 440 24 81 91 | Metfru 1779 18082 8905 3822 37625 1646 43393 20158 24210 3416 3182 224 3132 10572 2996 3305 231 995 92 | Meygui 17 166 37 24 203 18 302 199 109 25 1 1 31 58 15 4 1 1 93 | Mycpop 494 1987 2634 1103 229 1088 6184 8166 8548 1 879 60 83 185 28 95 12 145 94 | Nadful 8 43 16 10 66 12 87 100 57 18 1 1 6 10 8 41 1 6 95 | Naucas 47 445 134 150 897 98 1116 995 438 138 50 1 82 209 73 47 6 11 96 | Nechae 268 953 1588 280 2982 276 3784 4140 4328 258 694 32 320 922 150 436 4 70 97 | Neofis 100 2601 744 367 3459 149 6170 6280 2037 643 324 4 392 744 136 439 57 93 98 | Neogan 10 885 79 77 523 40 3768 4498 288 34 30 4 130 154 38 52 1 2 99 | Neucra 90 497 379 87 866 149 1296 1173 926 129 139 8 72 279 38 91 12 50 100 | Ogapar 6 40 16 6 71 6 96 86 46 8 1 1 16 13 2 14 1 1 101 | Oidmai 57 263 261 54 663 12 1155 1231 771 36 43 22 175 310 84 125 52 6 102 | Ophcla 1 4 1 1 2 1 20 30 2 1 1 1 1 2 2 1 1 1 103 | Pactan 2 17 4 1 12 2 28 30 10 1 2 1 4 2 1 1 1 1 104 | Parbra 41 1441 578 478 2741 43 3198 2496 1570 313 246 10 133 578 115 492 35 67 105 | Pendig 224 1391 1069 447 4166 243 3957 2711 3020 374 390 37 471 1166 442 287 10 105 106 | Peripo 2 13 24 1 65 10 47 19 49 4 8 1 8 12 2 13 1 2 107 | Phanod 29 1077 425 168 1465 98 3586 3789 1100 306 155 7 175 589 35 291 7 121 108 | Pickud 1 3 2 2 10 1 17 13 4 1 1 1 1 6 1 1 1 1 109 | Pyrter 167 1110 906 270 4178 234 3449 2778 2625 499 347 39 276 1360 386 656 30 77 110 | Saccer 164 1829 323 266 2559 186 4096 2884 788 124 18 1 249 898 180 190 1 20 111 | Saicom 1 2 1 1 9 1 4 2 3 1 1 1 1 6 2 2 1 1 112 | Schjap 143 1429 544 382 2148 164 3771 3314 1759 228 154 14 191 764 210 266 8 10 113 | Sclscl 220 2921 568 910 4232 157 9970 8060 2815 204 79 1 619 1073 316 357 3 22 114 | Settur 159 1716 737 504 4650 142 6168 7923 2935 604 322 120 328 1398 296 985 60 80 115 | Sormac 98 160 267 57 1066 86 580 432 768 102 85 6 44 248 88 75 1 53 116 | Spapas 16 252 55 44 352 14 618 457 171 18 15 1 19 69 27 26 1 1 117 | Talmar 440 2487 1373 681 5849 118 6696 5056 5393 797 396 54 461 1494 234 484 5 176 118 | Tapdef 1 496 79 244 1306 48 1364 626 831 136 34 1 60 532 202 202 6 1 119 | Thelan 4 47 24 4 139 4 94 61 78 14 14 1 10 47 2 6 1 1 120 | Thiter 134 384 783 146 1982 132 1575 1452 2449 222 357 72 30 760 214 366 48 130 121 | Triree 1 49 44 4 27 1 170 188 47 10 18 1 4 6 1 4 1 1 122 | Trirub 20 149 104 34 453 10 392 332 283 60 44 8 84 161 38 38 2 12 123 | Tubmel 1890 6436 4117 1554 21862 1152 18133 20917 12894 1939 725 16 1241 5702 2118 1595 180 177 124 | Uncree 21 344 141 72 604 28 714 599 608 60 53 1 38 174 10 84 1 28 125 | Vanpol 736 1532 824 517 1875 1016 4786 3023 1147 86 10 1 123 269 104 43 1 10 126 | Verdah 97 914 628 336 3400 109 2504 1778 2321 402 248 99 256 656 80 279 4 35 127 | Wicano 324 10820 694 1776 10263 484 24162 17759 1649 730 30 2 1027 1956 958 580 7 34 128 | Xanpar 139 475 585 246 616 143 2115 3268 2031 62 155 10 50 186 39 180 23 35 129 | Zascel 4 57 34 21 163 12 222 242 123 22 8 1 12 69 11 63 9 4 130 | Zymard 6 8 16 1 13 2 26 62 42 2 7 1 1 2 1 1 1 6 131 | Agabis 598 3009 1558 690 7271 261 8257 5558 4970 641 294 90 702 1914 950 477 31 43 132 | Amamus 443 3841 1658 1038 11272 485 9814 6429 5594 986 343 32 1186 3460 1034 1093 42 144 133 | Aurdel 1182 4429 7964 1035 19005 1090 11023 6275 21556 1553 3442 568 1530 6439 1260 3014 177 1313 134 | Bjeadu 389 1911 2262 449 7675 417 5009 2475 7298 709 881 138 587 2600 790 998 72 335 135 | Botbot 192 2270 931 283 6075 265 5308 3043 4077 604 316 18 472 2040 702 476 21 95 136 | Cersub 246 1304 1465 398 5508 267 3852 1923 4659 402 567 61 605 2055 588 792 35 133 137 | Conput 184 1373 1073 339 5320 210 3802 2859 3500 487 320 66 445 1828 515 472 27 91 138 | Copcin 450 2480 1823 998 7198 672 5806 3660 6576 971 402 38 390 1754 495 563 72 182 139 | Croque 147 2617 460 630 8980 268 13139 5886 1722 509 132 16 554 4726 1050 504 19 34 140 | Crygat 26 59 68 14 308 20 215 193 154 38 18 1 43 70 30 19 1 4 141 | Dac_sp 126 591 473 232 3596 541 1855 999 1542 261 113 8 305 1415 273 368 13 40 142 | Dicsqu 520 1555 2367 425 9704 789 5233 2726 7539 937 662 54 779 3187 1066 935 31 198 143 | Fibrad 1 16 14 8 64 4 37 13 45 6 6 1 11 24 6 8 1 2 144 | Fommed 113 7401 239 1498 12193 267 26615 25662 1137 215 31 1 1692 5129 3280 701 4 12 145 | Fompin 418 1366 2059 356 8972 384 4225 2199 6472 778 662 99 972 3330 894 1203 76 298 146 | Galmar 369 5068 1450 745 7189 445 10251 7179 4901 539 424 17 619 2207 754 667 101 172 147 | Ganluc 574 2235 3232 668 11558 675 6458 5181 10883 1227 991 164 919 3824 1133 1230 58 269 148 | Gymlux 211 4392 856 891 8073 373 10752 7268 2772 765 212 4 1050 2476 939 1065 25 53 149 | Hebcyl 414 2415 945 565 4483 285 5168 3124 3147 463 240 12 393 1184 373 372 16 115 150 | Hetirr 413 3467 2204 847 12725 676 9066 5243 8611 1344 695 81 1281 3574 878 960 58 174 151 | Hydpin 423 2775 1692 770 10812 639 7552 4967 6315 1078 448 20 945 3344 1055 1263 56 177 152 | Hypsub 386 4240 2097 854 10326 530 10231 5791 6348 1016 822 57 1087 3367 979 1124 71 257 153 | Jaaarg 168 1249 437 351 3112 151 3081 1663 1547 367 80 1 302 747 236 226 8 45 154 | Lacbic 3697 34104 9127 6459 72278 2709 78497 47738 28574 7762 2052 95 7390 21450 7371 6714 492 557 155 | Malglo 1 126 33 33 425 30 325 128 194 29 10 1 77 137 20 24 1 7 156 | Mellar 2756 37948 7239 6876 58945 2520 88497 61379 25564 3352 1172 91 5700 18341 8619 3277 175 446 157 | Micvio 196 607 918 189 2586 135 1932 861 2787 271 279 22 127 788 164 263 29 133 158 | Mixosm 4 6 48 2 100 6 26 5 103 6 36 1 16 37 6 16 1 1 159 | Monper 46 595 133 146 1088 88 1482 1037 688 102 12 1 113 292 76 75 2 12 160 | Mycthe 65 612 211 330 1614 135 1261 818 1053 315 87 1 9 432 148 151 5 2 161 | Ompole 13 91 18 26 255 18 265 209 103 34 4 2 21 59 20 32 6 2 162 | Paxrub 211 4087 783 1033 15148 615 10905 6187 4318 1894 204 19 1591 4949 1749 1582 108 88 163 | Phacar 760 3615 3704 845 15100 663 10153 7262 10444 1168 1311 126 1277 5606 1531 1872 122 471 164 | Phlbre 1011 5549 4587 1532 21784 990 14703 8998 13752 1520 1433 137 2203 7785 2257 3038 162 537 165 | Phlgig 22 107 170 22 513 14 275 139 434 62 87 8 50 211 56 74 1 35 166 | Pilcro 530 8837 2043 1513 19262 877 20773 13559 7409 1753 489 40 2322 5939 1909 1783 82 163 167 | Pirind 165 974 646 234 3316 178 2747 1259 2065 272 189 4 246 926 222 237 8 53 168 | Pismic 971 6178 2701 1372 24260 1173 16808 9682 9704 2295 560 46 2621 7750 2296 2668 159 259 169 | Pleost 445 4208 2112 1433 14744 803 10515 6433 10379 1763 712 71 1228 4645 1505 1361 150 143 170 | Plicri 290 1971 1376 358 5022 268 4400 2117 4332 383 533 49 453 1794 480 535 71 198 171 | Pospla 6080 16907 28833 5813 104219 5873 53500 27435 80449 8594 10706 1266 9007 35814 7360 14013 918 3170 172 | Pucgra 2244 34390 7430 6844 50304 3341 77050 52244 24383 4158 1615 73 5492 16375 8332 4006 295 571 173 | Punstr 332 987 1337 279 4580 298 2592 1469 3977 484 374 18 377 1394 337 371 32 165 174 | Rhotor 6 10 55 4 70 8 18 18 103 4 32 1 2 26 6 4 1 8 175 | Rhoglu 42 52 480 18 933 39 238 108 1110 44 232 6 20 344 46 146 10 56 176 | Schcom 408 1328 2802 469 7706 535 3713 1974 7887 641 1010 95 446 2857 571 955 46 432 177 | Sclcit 449 4037 1241 791 15130 698 11051 6913 4114 1585 275 9 1596 5170 1818 1588 92 66 178 | Sebver 728 4457 3113 1395 12806 832 11386 7287 8859 1173 872 40 1246 3575 1040 958 56 276 179 | Serlac 1467 7502 3427 1470 24016 766 21893 13795 9615 4277 278 4 1713 6220 2825 2634 127 169 180 | Sphste 2815 28171 10062 7118 65476 2674 73105 56560 33455 5586 2584 137 7495 19331 5934 6185 376 951 181 | Sporos 140 798 535 260 1381 227 1797 605 2019 49 125 4 63 317 83 322 4 66 182 | Stehir 360 1558 1127 343 5057 282 4084 2278 3792 473 265 12 447 1597 494 533 12 110 183 | Suilut 49 757 196 141 1957 93 1775 1063 796 154 49 1 249 572 149 187 14 20 184 | Traver 311 1033 1808 298 6089 371 2902 1728 5705 739 675 136 523 2300 635 857 53 296 185 | Tremes 671 6601 2551 2357 13672 1408 14539 9212 8021 1535 495 15 1005 3520 1397 1141 57 361 186 | Triasa 300 437 1981 133 4975 208 1443 1028 4853 541 860 112 426 1822 393 799 54 319 187 | Tulcal 1377 6627 5156 1814 19793 1247 17379 11637 17242 1885 1415 82 1441 5385 1531 1919 138 381 188 | Usthor 12 96 126 42 869 28 281 204 337 150 36 1 49 336 80 86 4 1 189 | Walseb 10 196 19 51 290 16 525 408 139 19 5 1 33 68 33 13 1 2 190 | Wolcoc 623 2376 2407 598 12677 919 7662 6077 6618 1167 693 102 1218 4414 1466 1115 35 344 191 | Concor 2 131 8 12 126 4 296 304 31 14 1 1 4 20 8 4 2 1 192 | Coerev 165 2550 799 419 5418 199 6971 6351 2275 433 205 25 714 1898 556 744 8 82 193 | Morelo 164 908 556 225 4493 252 3099 2531 1860 508 137 13 340 1229 362 475 28 32 194 | Muccir 215 6984 617 945 14008 1122 18196 11628 2512 1319 102 1 2335 4779 1521 1341 5 25 195 | Phybla 810 16696 2279 2796 28497 971 49594 42965 8225 1951 369 8 4062 10116 3472 1719 36 127 196 | Annalg 225 28454 552 2834 15615 480 52724 50645 2448 715 75 1 3388 3732 1666 640 9 4 197 | Enccun 3 4 7 1 76 4 14 14 72 12 4 1 1 20 6 28 1 1 198 | Entbie 112 6199 424 738 7681 62 12538 9179 3256 820 155 14 1355 2396 681 553 16 1 199 | Noscer 42 5921 102 236 2364 54 10269 10465 395 61 2 1 454 928 452 75 2 2 200 | Vitcor 1 106 8 20 179 1 272 258 42 6 2 0 23 59 22 16 1 1 201 | Edhaed 10 1129 18 97 514 2 2207 2024 126 22 1 1 96 109 57 16 1 1 202 | Nempar 3 196 28 28 238 6 532 531 85 6 17 1 50 84 26 28 1 1 203 | Hamtva 1 1 1 1 1 1 3 5 1 1 1 1 1 1 1 1 1 1 204 | Vavcul 25 273 67 40 711 10 793 680 196 16 8 4 120 275 101 54 1 1 205 | Pir_sp 122 2894 218 409 1859 130 6257 5757 635 164 5 1 201 388 262 36 1 8 206 | Danrer 7787 129485 26121 20087 339477 14470 396196 428918 102222 20459 5321 421 64491 155087 72003 41654 1816 2039 207 | Diclab 58 616 167 120 2084 45 2112 2552 561 166 35 1 275 692 239 416 16 1 208 | Gadmor 3108 22542 12725 4291 83027 2933 77647 86765 39897 6532 4154 166 9581 27394 10226 11066 828 787 209 | Gasacu 6498 35943 23355 7496 141061 5170 113060 142603 73286 9575 4626 516 10614 46341 21300 33799 3064 2854 210 | Hapbur 2135 22383 5612 3605 57140 1851 59934 72858 18007 2750 858 100 6712 21361 7899 12277 993 353 211 | Labfue 352 4009 1228 592 10812 301 10486 12034 3637 467 291 108 1117 3913 1526 2055 91 51 212 | Lepocu 1438 20405 4992 4207 44731 1474 53294 56893 18670 2811 1595 72 4879 14379 5239 9802 669 238 213 | Mayzeb 1438 20405 4992 4207 44731 1474 53294 56893 18670 2811 1595 72 4879 14379 5239 9802 669 238 214 | Mchcon 337 4076 1272 645 12059 330 11502 13426 3790 535 316 127 1378 4460 1751 2407 129 49 215 | Melaur 297 3530 1104 517 9916 290 9788 11319 3144 419 253 84 1074 3649 1350 1730 69 46 216 | Neobri 3345 54848 10055 7990 137981 3376 148620 179418 31372 6307 2011 142 17097 52834 20144 30015 2235 549 217 | Orenil 4246 66889 13065 9849 166785 4212 177396 211483 41037 8986 2200 272 17713 59562 26959 34507 3524 724 218 | Orylat 4379 76881 20544 10750 198041 3948 194768 217226 73552 18308 5792 438 19312 62649 27312 39909 2148 1847 219 | Punnye 2925 26167 7073 4477 73743 2281 70285 85109 22875 4466 968 362 8343 25484 8761 15221 1017 281 220 | Rhaeso 381 3936 1405 569 10388 319 10427 11719 3755 450 325 132 1119 3801 1411 1881 77 59 221 | Salsal 145088 1515080 408792 257738 4764505 212250 4715017 4814254 1530014 373533 89985 2615 594340 1481479 545397 503815 24958 18181 222 | Takrub 4928 47939 18765 8762 134551 4358 128662 147386 64811 10223 5872 543 10921 43030 17765 33692 2661 1775 223 | Tetnig 6403 35237 31176 7134 118982 4219 97211 115714 94067 10325 11476 1004 8504 38744 13973 39108 3686 3769 224 | Xipmac 454 7794 1709 927 17989 528 21114 24226 6247 1114 426 44 1686 6095 2621 4312 248 55 225 | Oikdio 2024 47921 6074 7185 27191 1258 78800 55792 19479 1228 1424 80 2640 7820 2502 2500 73 346 226 | Cioint 652 11233 1497 1166 18408 574 27656 28956 5118 1225 261 10 2105 5844 2192 1178 44 121 227 | Calmil 7331 144045 44756 30844 284912 9492 453509 373539 220017 22488 11815 954 27738 81537 36460 119293 1683 1318 228 | Leueri 1400 28994 6172 5277 66951 1940 85590 79061 24139 5327 1442 75 5720 17851 6050 9981 441 370 229 | Braflo 12159 141050 36373 19903 272488 13004 314704 268064 118984 17801 9854 448 29082 105520 54950 28402 1375 2681 230 | Petmar 13760 196313 38185 86882 352662 13044 414002 450108 120923 27950 10760 357 36740 158192 79669 39557 2293 4896 231 | Ailmel 1667 148450 18008 39059 271203 6404 347293 350546 112398 16998 6318 167 17897 63414 15385 28318 6492 357 232 | Allmis 1806 44767 8061 6722 122901 4533 121048 119770 35577 12862 3250 173 14860 39900 10809 28443 2332 495 233 | Anocar 15689 399968 113738 92514 790629 35667 1062329 868617 423310 83458 71654 1891 61683 184656 56690 117763 8644 2536 234 | Bostau 47425 4252551 258787 833953 8395271 219031 9196360 8601075 1446513 1287345 100896 6862 804159 2105199 781427 1376597 63709 14196 235 | Caljac 2340 181878 14593 26981 413670 13792 476906 356921 83975 37210 7700 240 23079 117250 42589 36553 2758 495 236 | Camfer 3599 157676 24366 26999 303889 12332 350144 339412 102911 26841 10238 549 26344 89895 30255 54505 5946 1506 237 | Canlup 4097 170978 27158 26156 514263 34787 487707 447998 231445 37713 15035 867 52552 158268 26974 99481 13291 1699 238 | Cavpor 10856 538330 38655 74654 907709 23635 1161055 986027 162301 98679 15871 1983 64885 243491 83224 134161 7494 3745 239 | Cersim 341 30138 20356 4261 92835 1450 78934 85162 36174 4446 15763 136 5296 25601 13534 7313 652 444 240 | Chilan 382 30462 2559 4397 61505 3055 73270 69846 13620 4807 1126 119 5179 19656 6798 8173 587 142 241 | Chohof 17982 766058 64145 140287 1251977 74648 1869066 1616118 269092 137925 15987 360 98764 289460 112208 142610 5682 1633 242 | Chrpic 6404 71982 24340 17108 195478 8481 208146 215682 89267 20461 7412 486 20793 45770 15226 41549 1689 1169 243 | Chrasi 722 50034 2915 9791 152244 3058 143286 172902 20998 28799 841 45 17056 36481 17616 10331 515 224 244 | Concri 377 20128 3642 3734 69214 1055 48091 63100 31897 4220 1676 198 5156 14387 7630 6561 616 221 245 | Crigri 2475 199499 12700 40530 462530 16018 480161 469309 58929 43916 3464 138 43902 140242 52662 51394 4034 508 246 | Dasnov 6475 384843 65976 58218 902892 14319 899301 873847 252091 124249 29815 8761 58158 168680 58412 89451 6461 5501 247 | Daumad 8 1763 82 269 3227 74 4702 4297 638 225 35 1 292 799 337 314 18 2 248 | Dipord 11729 537406 79224 132014 962296 31166 1340480 1044294 464453 85142 43081 907 107972 258938 84226 112819 8109 10561 249 | Echtel 964 40811 4665 10992 117469 2621 110638 117232 28032 8014 1649 86 8647 27869 10612 14969 1102 251 250 | Eleedw 11445 69553 14245 11467 248509 5878 232517 204782 36697 68743 1153 134 47359 78413 56358 29184 816 238 251 | Eptfus 4918 52478 13818 7736 104968 2899 121673 115537 41349 8668 5054 1350 9937 40811 10042 15499 2730 516 252 | Equcab 4383 108970 50877 23372 332737 11000 251372 246750 240859 26604 37671 230 17217 143506 33138 41130 3673 559 253 | Erieur 2415 85871 31124 16007 234720 4104 254360 242638 84349 24612 5384 165 19970 58298 23183 103982 50763 426 254 | Felcat 657 57429 8872 10479 173245 1472 133678 131841 49038 13317 2122 116 13216 21081 7277 14425 1700 321 255 | Ficalb 2634 165478 16050 31156 300778 11054 366934 324594 80914 44064 6810 986 27246 77663 24426 88577 9341 1487 256 | Galgal 2712 37458 12252 7732 124807 4806 101167 97635 46944 15835 4492 566 11079 34373 8560 39058 3482 884 257 | Geofor 875 110843 4369 19992 212016 6331 256389 228080 23815 25212 1536 53 22707 61577 20389 50639 4413 426 258 | Gorgor 13337 620945 48523 134260 1683507 42225 1433255 1345165 214168 96779 12080 942 149231 419227 147505 136886 8292 1664 259 | Hetgla 474 47830 3070 6342 76571 3959 100907 94313 17128 6080 1110 103 8683 22146 9779 10572 877 167 260 | Homsap 4128 193743 16449 28672 440007 26011 515295 438026 112639 39687 5201 238 24369 115377 42701 55096 3110 682 261 | Jacjac 449 41122 2295 9203 87948 3819 89926 100833 36134 8055 885 75 9599 33577 11699 7976 545 184 262 | Latcha 1662 46851 4671 3738 84135 2159 112504 121430 37607 12266 1276 75 5576 23516 9128 10545 442 137 263 | Loxafr 1908 250175 18877 41119 441698 17301 598613 474396 127052 42734 6685 105 33286 69354 27202 48416 2382 728 264 | Macfas 329 10657 929 1586 21302 1304 28776 25099 14279 1486 272 40 1243 5946 2791 2461 124 24 265 | Maceug 1637 276253 6410 51066 429007 14352 621835 559017 39049 33177 1677 221 44427 115152 49265 33164 1812 286 266 | Melgal 154 5985 792 1181 16555 461 17348 15797 5647 1532 358 24 1301 5138 1043 7204 1178 67 267 | Melund 1601 31105 4433 5168 99239 2481 82332 91134 18801 13828 1050 52 7834 23220 6231 20686 1319 195 268 | Micoch 1753 43766 4709 10496 99321 3431 108737 121661 43790 8596 1222 48 7879 28007 8414 15590 3306 176 269 | Mondom 3617 520195 12874 105639 848442 30000 1314218 1102803 104334 82775 5027 123 60535 174080 114261 69606 1916 943 270 | Musmus 906 46500 4160 8442 113858 3282 112624 110803 31019 12920 1127 107 10555 34209 12001 13793 771 166 271 | Musput 718 31737 3991 6143 105328 2988 84125 105964 21013 5770 1579 177 4949 18107 6884 7152 673 225 272 | Myodav 15092 167815 39993 24341 343974 11448 413300 397957 127992 28699 13450 370 34461 113502 32100 45873 4709 897 273 | Nomleu 5712 266294 15434 35592 484099 31168 743136 584088 139074 41864 4215 328 33827 147082 48934 87578 2265 723 274 | Ochpri 1940 47256 22860 8378 113133 4565 110525 111897 53747 15370 2301 186 17573 34782 12296 17536 1702 245 275 | Octdeg 884 69590 6710 10909 146051 4192 175541 174273 28693 10317 3136 175 10975 39593 12296 19870 1509 298 276 | Ornana 13156 325660 78577 67891 755724 21779 922022 1160408 425042 54258 27059 1726 52054 160362 53934 93697 5329 3112 277 | Oryafe 456 52926 2457 13381 114212 2081 121731 95990 15624 13130 769 99 12753 30404 8536 14500 539 145 278 | Orycun 6568 217465 177065 49652 633485 33248 567864 519498 331204 148218 156222 405 55155 142462 24198 86283 9203 2221 279 | Otogar 914 59863 13209 9653 118229 3471 140235 135557 46804 19113 2116 100 9128 30334 12455 14651 1352 184 280 | Oviari 2879 341883 15154 88312 676280 24421 730384 589682 97508 61364 6810 338 52688 140836 64801 94547 3520 1011 281 | Pantro 5378 357540 21930 64453 692664 30614 875851 763833 136315 57029 7100 474 52611 192549 73230 80830 4691 897 282 | Papanu 10682 214535 33366 39203 447623 28479 887912 627965 309441 47021 10141 1826 25662 130329 45889 64239 4162 1273 283 | Pelsin 24087 356411 105404 48920 920745 35460 945671 1023128 461622 97967 44397 1611 82031 272768 65744 183108 13647 4474 284 | Ponabe 10027 775194 43320 120471 1432566 59739 1846975 1607577 231464 119909 16409 609 132799 403526 149338 183398 9862 1651 285 | Procap 7872 459523 28313 114173 799899 26284 1086351 1019376 159960 63638 9531 689 73572 234126 101262 80548 4406 1725 286 | Ptevam 5497 290133 34972 68400 488734 20057 635123 529771 203328 52855 12408 795 72595 130506 46468 99324 5540 3269 287 | Pytmol 1 188 1 32 345 16 546 506 52 24 1 1 52 96 40 82 1 1 288 | Ratnor 13075 986255 53651 227648 1894096 65199 2220387 2030530 324901 149894 15221 1003 168841 566664 231179 210498 10929 2837 289 | Saibol 434 27068 3019 4167 130052 1816 141758 60429 46457 6626 1164 67 4321 28893 8800 8309 740 140 290 | Sarhar 282 90411 3921 38230 153795 2453 303618 226198 16394 3668 592 16 25944 32845 21674 7314 260 88 291 | Sorara 847 45468 6858 6848 98715 2274 111544 92301 51198 9421 3525 885 8413 23367 7378 9215 702 222 292 | Spetri 741 60120 5119 9182 110676 3337 135394 124278 19594 10037 1365 69 11123 34050 10821 14569 1497 151 293 | Susscr 295 21110 1823 3566 37410 1462 45413 45300 8042 3512 537 16 4011 11103 4109 5639 425 56 294 | Taegut 3636 336435 28300 58424 607532 16723 784007 707974 99886 71689 14118 777 61425 170429 58964 171128 18993 1962 295 | Tarsyr 25015 1551928 87636 264076 2754102 102763 3724036 3316777 557817 191134 28249 1470 252140 875850 283845 284504 24777 3770 296 | Triman 498 36265 2240 6097 65455 1493 80617 78046 14035 7208 841 78 5808 17996 9116 6826 481 152 297 | Tupbel 6621 445280 29860 60262 991340 21978 1004610 1099223 180534 80939 11526 340 83569 358311 106257 97494 6558 1083 298 | Turtru 3182 172271 19517 23643 370731 50774 433738 440300 177131 80268 8568 268 59293 172849 21432 65821 2228 720 299 | Vicpac 10764 1125802 130450 335468 1682273 37612 2236447 1943231 372406 176795 12780 887 279984 639022 246438 170891 11650 2253 300 | Xentro 11465 298065 57844 54956 736370 67568 995387 954945 280417 62615 21395 570 56227 182568 66415 185997 7940 4840 301 | Acrdig 3723 95322 12566 12969 127554 3317 211195 176057 42951 8803 2325 61 12969 39384 13846 11038 290 493 302 | Nemvec 11091 195189 38663 31439 352388 16555 471868 451294 140715 26023 7728 822 33201 115967 43869 22008 720 2866 303 | Alamos 1876 25129 6751 3590 38809 2292 59334 54686 26869 2772 1843 196 4139 13004 4585 3222 110 626 304 | Hydmag 10063 781295 24354 52651 523114 13114 1600002 1603200 87884 21611 6457 137 88455 177439 72636 32408 654 663 305 | Mnelei 819 19076 2498 2040 21975 1114 40673 36885 10309 1416 641 298 1672 5835 2738 1957 44 97 306 | Patmin 12431 168051 38246 23429 323343 20023 417948 334285 118244 22658 10085 536 39125 125155 59870 24383 1087 1899 307 | Lytvar 6695 155181 14477 23328 262937 8618 358365 304340 54509 17760 2380 196 34100 88397 45298 12422 483 1320 308 | Strpur 27390 536488 62112 74549 870510 25606 1210143 1050219 245989 41888 12113 833 111856 319798 150186 38800 1494 2161 309 | Sackow 7960 194897 28209 33132 476886 18386 563168 471632 91102 27861 3889 796 71775 188067 91715 23702 217 1785 310 | Cragig 7609 166216 13236 20100 199100 5921 338377 310504 51685 9408 1146 38 34161 84851 48628 10438 325 631 311 | Lotgig 2808 109370 5595 14130 112113 4060 233541 203880 29951 5001 709 22 10968 35365 19673 5758 144 117 312 | Pinfuc 3163 64730 6006 8063 86857 3064 133990 105143 24841 4348 1060 31 10093 35198 19659 2890 93 200 313 | Aplcal 4116 100317 13317 13819 151092 6925 223847 195953 68789 7955 3121 677 15459 54783 24934 17070 417 922 314 | Ascsuu 1315 38158 3903 6191 35256 960 73989 57029 12999 1309 824 58 7571 10871 2904 3628 75 220 315 | Brumal 3456 124613 6537 12389 91418 3356 250564 222044 23520 3080 595 11 18920 22321 7465 8442 98 241 316 | Burxyl 868 22025 3216 2243 14655 908 35453 19842 12080 1245 998 47 940 3977 1656 1045 56 161 317 | Caeele 608 26047 2816 3202 15177 577 43170 27743 9758 885 430 31 1340 4333 1940 1088 14 139 318 | Hetgly 2484 88951 9397 11205 44257 2289 143206 100388 37860 3365 2528 147 5209 12377 4292 2318 34 893 319 | Hetbac 739 19618 2493 2882 20063 1096 41611 33022 9522 1023 453 10 2473 5202 1862 1447 24 45 320 | Loaloa 391 16561 788 2259 11421 379 31639 25633 3554 507 113 4 2234 3331 1147 663 8 27 321 | Melinc 1576 72700 4729 6034 26735 2077 116043 96715 19621 1674 1167 43 2890 7460 3139 1700 49 100 322 | Oncvol 194 8121 542 1098 7117 155 16104 12876 1811 325 129 9 1215 2121 655 495 16 24 323 | Pripac 1593 28606 5244 7098 35676 1607 61068 36558 20961 2626 1267 137 3945 8520 2349 2884 198 280 324 | Strrat 565 38717 1757 1950 18924 461 68886 65053 5126 841 235 10 2820 4555 2423 740 27 150 325 | Wucban 948 37860 1903 4513 25273 824 70680 58033 7457 751 172 29 5378 7812 2703 1891 52 79 326 | Trispi 2284 69694 7861 7765 54353 1388 128147 91168 20601 1844 2173 30 11157 19353 5807 5159 109 566 327 | Triadh 514 12046 1017 1492 14686 354 31871 28199 2810 747 132 2 1940 4260 1704 1039 25 10 328 | Closin 6559 37643 18520 7625 80249 2856 89595 62713 54831 5480 2949 95 8938 28250 9818 7076 328 1191 329 | Schman 5728 94332 18845 24269 168535 4709 241887 207122 63148 11343 2352 12 22434 48377 21679 10129 101 1035 330 | Schmed 26107 1137002 60600 114121 694681 19696 2176544 1861747 283924 38165 10897 259 104791 190574 85095 25706 500 1165 331 | Ampque 438 26071 1632 2883 53630 2206 70148 68801 6037 3502 299 37 8441 23254 14449 4309 112 48 332 | Helrob 1632 54234 5176 5482 51193 1555 111586 98292 15882 2041 1367 51 8649 15630 6606 3902 50 140 333 | Captel 7566 155568 24406 27425 292792 4511 391158 307159 88999 17358 4469 335 55517 112467 40385 25921 1682 1277 334 | Ixosca 64249 579333 281282 94910 1087690 51457 1385242 1211626 803964 72012 83145 9253 106985 374835 101833 138549 5369 29246 335 | Metocc 1278 13504 5020 4467 22418 1027 24988 9705 21343 1790 1618 164 1644 5815 1494 1882 183 483 336 | Teturt 635 24890 1595 2793 24737 549 56319 49793 4958 1181 98 6 2893 4813 2567 987 22 52 337 | Vardes 209 6380 782 427 12579 263 12928 19643 2500 272 144 34 576 5770 1379 375 13 27 338 | Strmar 3283 71458 10921 11169 84384 4498 156492 131374 35446 5499 1704 863 10268 29546 13574 4804 159 285 339 | Lepsal 17941 961308 39356 90200 815229 21374 2103838 1933502 180279 44173 5005 110 119415 212184 102654 38160 1295 1347 340 | Dappul 6236 131267 22738 19170 128406 4750 254888 204540 77497 8851 6558 440 11268 35270 14925 10824 467 1995 341 | Acrech 1250 40908 3308 4825 32928 534 85773 74221 10825 1316 521 17 5742 10755 5120 1778 34 118 342 | Acypis 14155 396382 39691 36261 249415 30784 822502 763124 117326 11638 9437 1392 42038 75455 34686 23227 658 3058 343 | Aedaeg 29879 543667 86964 94471 574265 29228 1013043 710012 321713 38146 23357 480 64590 183242 62623 47293 1973 4782 344 | Anogam 20426 219887 66431 27171 334912 13404 472745 368625 211747 18183 15574 1134 42440 103245 27502 25622 754 5061 345 | Apimel 1726 72190 5911 8636 30500 707 126008 106280 18068 1190 1653 171 5906 9260 3913 1399 38 488 346 | Attcep 88 5315 439 280 4948 35 11648 7303 2572 540 17 7 298 670 309 177 2 9 347 | Bomter 303 7899 993 1012 6148 234 16446 13738 3265 269 224 20 962 1990 873 429 21 72 348 | Bommor 19303 132817 52648 17768 174245 30944 327804 315483 156785 14316 15270 3130 23262 54067 24231 12226 383 6584 349 | Camflo 943 41249 3513 4158 29079 826 83906 74453 11926 920 907 144 5433 10015 4556 1349 55 286 350 | Culqui 20426 219887 66431 27171 334912 13404 472745 368625 211747 18183 15574 1134 42440 103245 27502 25622 754 5061 351 | Danple 9691 268626 31166 28170 216325 7725 581587 588175 90115 10902 7547 796 25323 70151 37091 12088 377 2037 352 | Dromel 1090 39313 4905 5166 34169 2207 80000 68583 17306 1947 1389 92 4389 10272 3223 4062 195 253 353 | Harsal 1372 35020 7601 4226 38197 1018 77013 63538 24325 1857 2713 333 4496 11743 4839 2953 85 768 354 | Helmel 2874 53026 7956 8720 50499 4544 120984 117367 26873 2820 3011 153 5938 20712 8170 2939 176 817 355 | Linhum 999 26199 3394 2455 21589 1044 54208 47583 11030 1097 818 46 4074 8334 3198 1429 19 273 356 | Lutlon 1500 121378 8162 14831 88506 2651 216726 147494 41641 6478 3375 56 11368 22315 6699 6816 294 596 357 | Mansex 5974 58955 14143 5024 57374 2409 127418 115404 35605 2588 3526 305 6175 17112 7881 3264 100 1351 358 | Maydes 818 28415 2326 4734 20983 433 51398 36095 7082 931 389 2 4784 6107 2365 614 4 136 359 | Megrot 20426 219887 66431 27171 334912 13404 472745 368625 211747 18183 15574 1134 42440 103245 27502 25622 754 5061 360 | Menmol 194 10966 470 945 5305 174 19953 18540 1959 268 85 10 648 1746 885 206 6 18 361 | Nasvit 1378 61310 5381 6804 63889 1731 153023 143610 33098 2206 1460 65 6223 18133 5385 18648 378 419 362 | Pedhum 705 11579 1313 1081 4588 266 18292 16211 5890 213 384 29 476 1254 555 74 1 29 363 | Phlpap 1125 39798 2477 4658 22849 750 70226 52862 12381 1273 361 6 2780 5642 2527 1507 51 219 364 | Pogbar 515 9428 1679 1583 7865 203 19868 15562 5515 292 369 39 1289 2791 1560 621 18 122 365 | Rhopro 5886 347946 22187 34530 241376 8723 619333 574821 109075 7487 8958 184 26793 51914 22598 16670 453 1914 366 | Solinv 4017 89298 16131 10016 76667 3254 21791 168569 48990 5052 4942 555 10713 26432 11651 5105 190 1655 367 | Tricas 1052 51195 6323 4615 24516 1457 87039 74259 17399 1091 641 54 2406 7675 3150 2032 52 291 368 | Capowc 318 1921 2075 426 7684 283 4838 2194 5353 475 918 111 727 2562 624 1115 53 272 369 | Trivag 4474 505987 12753 78629 494214 10476 854769 797970 78169 28379 702 1 48968 116358 56966 32528 721 174 370 | Bignat 850 3052 1278 714 15881 806 9229 14302 7179 2466 89 21 1188 4645 1626 2785 58 77 371 | Phatri 460 3632 1787 824 8283 687 8868 4522 6185 945 402 46 721 2505 970 745 18 179 372 | Fracyl 2674 30826 6334 6274 48576 2584 76805 50976 19855 3920 655 44 7510 13952 4843 3798 140 468 373 | Psemul 16873 118887 50901 24267 239819 13163 300050 157708 144907 16259 8906 395 35214 70669 27610 16087 386 4103 374 | Thapse 173 1351 712 342 6626 377 5294 2664 2594 553 163 24 952 1940 647 633 13 75 375 | Blahom 760 5880 2075 2672 14340 673 16030 7591 6822 1020 466 50 1425 3722 1281 1474 62 397 376 | Nangad 2408 17947 15474 3338 63281 2824 42704 26842 50495 6788 6229 720 5003 21042 4516 6258 654 1503 377 | Hypcat 360 1879 1829 425 12375 538 7057 6801 6890 1061 539 54 747 3051 728 2902 152 142 378 | Aurlim 119 916 349 208 2395 174 2399 1988 946 196 50 1 330 745 177 272 14 49 379 | Albcan 59 821 175 206 1920 58 2212 1045 696 56 26 4 265 629 144 147 6 9 380 | Hyaara 1625 9379 5040 2314 30122 1744 27884 25517 15426 1834 1006 78 2775 9965 3441 3172 109 323 381 | Psecub 433 1741 4523 531 9384 373 4573 2696 8224 988 2452 213 498 2782 516 2283 291 750 382 | Phyinf 24368 90263 84277 19432 346986 24785 258210 233033 283103 32738 19948 1648 28094 108511 33323 47048 2005 8179 383 | Pytult 901 5588 3724 993 22768 914 14920 9696 10704 1943 1304 237 1618 8607 1833 1941 44 455 384 | Sappar 505 1264 3146 303 8645 519 3206 1751 6698 1158 1566 228 614 2712 481 1014 75 582 385 | Aurano 1651 6502 19932 1743 28941 1382 13853 7399 45438 4162 13592 5126 1195 8171 1639 2758 156 7096 386 | Ectsil 6506 22138 31559 5515 109861 6926 60356 33525 90881 10115 11200 1841 9836 40572 11639 11661 781 3988 387 | Cyamer 320 979 1418 395 5273 423 1979 928 4083 433 497 54 583 1955 323 867 38 200 388 | Chlrei 3145 4872 33253 1614 64129 2867 17398 14596 68637 7194 17247 3629 4866 28639 5068 16579 1340 5981 389 | Volcar 4985 18774 30258 5149 92667 4862 56813 50191 83795 9127 11236 1463 12618 38207 8691 16931 1625 3747 390 | Micpus 210 335 1108 95 1509 96 741 661 2408 108 451 208 37 415 117 130 4 424 391 | Ostluc 383 1942 2367 586 4750 241 3829 2099 5482 539 1125 120 247 1334 295 309 8 827 392 | Ast_sp 4 56 60 4 619 27 149 84 145 50 17 1 57 246 47 242 26 2 393 | Chlvar 548 879 7456 130 14730 404 3292 2402 15781 1565 4383 1057 1548 7326 841 5129 662 861 394 | Cocsub 422 1519 3538 410 9563 309 4574 2617 7233 535 1588 325 1158 4317 918 2577 153 459 395 | Aratha 56 744 116 119 1077 42 1715 1416 385 95 12 1 174 299 156 98 8 12 396 | Betnan 6428 233118 21605 27116 298727 7222 523625 452690 69036 20402 5630 196 43145 96405 38606 15298 594 1622 397 | Bradis 1832 19953 8791 3898 58886 1964 53163 42380 31284 5447 3404 308 7429 18828 6929 3852 277 967 398 | Brarap 6070 114187 14342 12315 143591 4244 245159 238257 52277 8510 2652 90 18949 42133 20910 8141 183 1306 399 | Cajcaj 2276 69900 7227 11149 109812 4853 159852 133878 26998 11659 778 77 15426 28629 12090 3191 47 173 400 | Cansat 8282 381829 24449 47598 441668 13814 846205 742967 86568 34559 6007 195 62027 126025 57730 19224 602 1624 401 | Carpap 1853 71720 8458 8726 90652 4235 167437 146822 50041 7284 1721 14 12156 27671 9722 5570 1385 128 402 | Citlan 637 37806 1869 4998 49998 1588 82940 73904 7919 2414 318 6 7614 16674 5957 1303 27 166 403 | Citsin 5246 279353 18616 33066 300594 9052 578910 494503 62689 17622 3810 149 49950 100117 38072 17808 382 1215 404 | Cucsat 3817 128469 13231 21839 136243 3387 266398 223226 64294 9389 2631 252 22315 36736 14308 6668 185 824 405 | Euccam 16836 423463 61618 60288 595461 16133 884284 656020 226362 42325 17479 189 82351 175892 58053 33492 1313 5306 406 | Eutpar 8452 160815 20827 19060 201512 5312 345777 313963 70396 13519 3368 174 27769 60550 28687 13750 462 1634 407 | Fraves 2218 31756 5288 4281 40852 2110 65953 50212 17323 2409 1198 30 6007 13684 5245 2592 206 330 408 | Glymax 10960 443363 34954 74159 700357 37043 890507 670449 194475 54429 7067 108 112376 229357 73205 27125 304 2000 409 | Gosrai 2541 153168 7327 17266 151297 6199 309267 273377 32746 7375 1567 127 29244 53021 22476 5049 155 277 410 | Horvul 1162 20277 4415 3474 55488 1602 59171 44046 17144 3483 1393 56 7344 15367 4877 2026 139 451 411 | Jatcur 6943 152953 21292 22429 178458 6305 346886 295276 73724 14754 2879 495 35818 57540 21309 9070 364 1072 412 | Lacsat 319 7450 653 1254 13506 304 19046 17269 2912 777 42 4 1644 3909 1604 331 10 24 413 | Leeper 15 133 52 18 253 16 277 203 163 30 24 1 26 45 16 14 1 16 414 | Linusi 3320 46100 9676 10515 90761 3451 111806 82649 35027 8649 2322 114 12511 23952 8383 9999 366 936 415 | Lotjap 4436 105417 13343 18314 130453 4819 210014 168495 51655 9160 2516 133 16404 37746 12759 6076 334 1421 416 | Maldom 24159 830057 97387 119376 1291679 33478 1940722 1573925 354050 84086 32626 896 181852 411700 162970 67331 3178 5589 417 | Manesc 1453 23061 7081 6761 89287 2287 57250 69302 20181 4312 1150 9 22464 30829 5435 6803 117 1067 418 | Medtru 12399 303299 28209 37617 383176 14470 664726 566532 86974 21985 4060 132 68568 123145 53029 20286 484 1970 419 | Mimgut 8830 211988 27592 29932 329882 6172 492134 424608 121470 14439 4535 292 36207 131272 53670 7174 70 1656 420 | Musacu 1156 34599 3661 6793 56803 1915 74500 62183 19903 2847 1020 24 8105 16806 7881 3917 59 696 421 | Orysat 16072 108962 63099 15111 216799 10409 245059 205334 153758 18075 25446 1579 27320 71339 27469 20058 1151 9655 422 | Phodac 2080 43606 7316 5932 74544 2509 97954 81222 22909 6495 2214 121 12390 23061 6643 5329 223 532 423 | Phypat 1691 110123 10201 16735 162984 6803 265331 182270 43050 11085 1494 116 19312 48688 22964 8576 92 530 424 | Poptri 7120 244091 18849 31127 327734 5480 545147 480997 69442 18407 3893 88 47902 100503 40061 18739 676 1028 425 | Pruper 1766 67708 5635 8533 98793 2450 159969 127119 24336 7709 1081 37 12165 28934 10005 7203 166 260 426 | Riccom 3400 121661 11679 22096 180233 4030 263689 253965 48913 7312 3884 355 24908 45198 17269 6052 576 820 427 | Selmoe 9343 106417 51103 28807 332184 15165 234677 173313 208226 41798 19280 1633 29419 95357 22546 28989 805 5779 428 | Setita 7258 65450 28902 10182 198319 10219 167459 157906 92861 17049 11858 1262 29092 73797 24637 14651 1038 4185 429 | Sollyc 1956 61885 5262 8517 90547 3190 150403 124696 32794 4734 461 6 12218 26589 10451 4815 1085 203 430 | Sorbic 35153 349718 135441 87510 920707 35292 938108 704001 437298 92606 47243 4667 124072 283549 98297 71608 4011 18940 431 | Thecac 254 15433 744 1670 15920 562 30069 24273 2124 1302 242 1 2804 4165 2242 516 12 18 432 | Triaes 450 5078 1617 898 16203 489 14000 11241 6108 1447 342 18 2111 4564 1254 526 45 187 433 | Vitvin 8576 167480 14136 23600 238385 7317 360571 296329 59951 23305 1935 42 35254 65013 25621 10592 398 708 434 | Zeamay 6719 77667 37993 14061 174834 8886 185753 146544 101666 17462 16844 1939 23954 56342 18790 19859 1302 7383 435 | -------------------------------------------------------------------------------- /paper_outputs/ALL.count.txt: -------------------------------------------------------------------------------- 1 | Plaviv 1815 63881 6238 5491 102516 3252 231438 185005 30204 4628 1523 423 11317 35657 11415 7688 631 701 2 | Babbov 1121 10079 2794 2113 35950 2129 42421 40918 10609 2737 363 27 3284 7607 3101 2030 62 188 3 | Thepar 490 29058 1221 2506 19316 917 110423 97209 6019 929 138 3 1097 3924 2208 899 26 98 4 | Crypa1 537 40135 1069 4475 21070 826 147601 113844 3287 768 105 3 3386 5889 1661 968 23 48 5 | Hamham 8948 54092 63672 16638 256773 6131 135531 76082 223210 10022 24410 2690 26785 107143 17230 39591 1904 8095 6 | Toxgon 7836 52637 46118 15585 253069 5805 131659 73652 180606 9146 15914 2151 27865 108001 18237 38066 1853 5425 7 | Ichmul 309 312427 809 10735 43019 328 1284159 1381411 4806 715 106 1 10580 11125 5683 1238 68 6 8 | Oxytri 759 266007 2052 27642 172067 2556 1009516 980266 7866 3930 229 4 17597 33410 9833 7297 174 77 9 | Partet 523 321051 1326 36915 147787 2009 1403549 1150343 6459 4276 151 5 25319 30492 12790 5672 148 21 10 | Stylem 322 94639 1537 12852 63342 1192 342811 336177 5186 1611 438 17 7593 11016 2715 3529 99 110 11 | Tetthe 365 658045 831 27951 135431 1829 2513627 2495212 3564 2286 58 3 25664 31964 11853 5835 173 19 12 | Permar 10914 128089 39874 26307 343504 12345 348428 183722 167177 18764 9447 641 23267 78740 23191 21745 919 2499 13 | Enthis 60 70336 116 3380 41180 172 359889 327658 757 1069 12 2 5667 8020 4569 843 22 3 14 | Acacas 8013 18289 69618 5560 179667 15865 74339 44096 173322 12722 32303 3622 5375 43798 9997 25071 2228 11427 15 | Dicdis 813 179983 1614 8953 47010 2283 726062 573680 3615 2173 61 4 6017 9667 5215 1124 31 54 16 | Polpal 5196 90176 10943 11931 64572 3645 378533 325848 23280 2879 715 15 6366 14321 7011 3267 72 900 17 | Guithe 9326 66340 50062 15682 430847 13597 173167 79108 228728 26715 19392 2746 16433 105063 23500 50907 4699 3604 18 | Leibra 3981 7987 31389 2370 112242 4116 25676 19707 81192 6327 12240 1636 4913 32229 5279 21552 948 5510 19 | Trycru 10607 131309 70637 17324 374577 6696 364802 158062 235589 16763 27270 6967 27306 103985 24800 57726 2859 7739 20 | Gialam 1101 7955 6005 1815 46689 1295 32631 29536 26034 2522 2021 140 3784 13174 2653 6179 285 421 21 | Emihux 16671 61269 341639 15667 451432 19383 141622 88370 938099 27415 198962 39278 12830 138710 22484 100667 7452 62994 22 | Naegru 515 138936 1305 16412 118117 2078 554522 291017 5143 3194 158 1 9040 26580 13702 3770 95 31 23 | Monbre 5320 22317 37698 3853 228233 6073 79116 34465 106720 16660 14430 1002 10130 53430 10303 17037 1007 3411 24 | Sal_sp 4231 9933 34628 3181 330246 4081 44770 20940 88351 12840 14834 1677 19039 135524 24168 32431 2849 4380 25 | Allmac 12783 21459 106093 6037 261333 11146 79746 21526 281037 28377 44604 10371 8144 53540 8511 23975 1383 13758 26 | Catang 4845 14102 37508 4595 213347 5073 65525 19665 106050 18157 15811 3246 10818 48987 10976 9398 425 3531 27 | Gonpro 6826 49383 32783 12257 176173 8051 162363 69700 140717 11545 9402 905 9030 39489 11015 16845 1674 3963 28 | Batden 1138 38027 3496 7294 127075 1417 153236 102238 12705 4598 500 19 16903 30813 9367 7551 109 122 29 | Hompol 1291 9424 10977 4436 131162 1373 35570 21350 26069 7077 4336 445 13138 33298 5486 18992 401 703 30 | Spipun 3575 25647 13362 6169 108626 3985 92410 54935 51663 6390 2942 258 8074 26392 7225 7124 311 892 31 | Acitak 3469 76278 31746 9942 167531 7070 360686 692572 121348 12341 13560 1311 12225 41357 9812 14491 844 2980 32 | Aciric 3972 39302 24995 8259 129345 3192 128490 73912 90172 7848 8973 749 8302 31287 6889 9935 395 2282 33 | Acralc 11959 32858 61098 9503 121742 10802 172982 397043 228084 11602 21246 1514 4909 24142 6043 8357 694 4469 34 | Ajecap 3354 47466 16699 9490 120878 3041 161004 102444 71022 8641 5027 355 8110 26034 6701 9476 463 1300 35 | Altarb 4414 21841 22208 6307 175775 6578 81367 49496 76034 12228 6687 491 9739 43120 10688 12947 577 1881 36 | Apimon 6806 32436 47687 8182 232004 8674 145734 105656 167751 18504 18906 1611 13848 51687 12167 17498 1177 4619 37 | Artoli 6714 72954 25847 15057 141110 7803 237666 178354 101407 9663 6095 310 16453 34397 9631 10279 582 1753 38 | Artben 2994 20242 17850 4875 94227 3248 72859 56926 65489 8449 6089 373 6928 18613 4264 8939 498 1194 39 | Ascrub 1118 68896 3433 5832 35406 707 250562 167098 10789 1919 611 33 3104 6480 2370 2246 43 252 40 | Ascapi 2871 23624 13350 5637 95242 2368 99734 40184 42884 5015 3512 213 7132 19069 4497 6868 208 1186 41 | Aspfum 4131 25566 21732 7089 126674 4507 96872 59964 84569 9331 6473 474 7475 25026 5585 11434 597 1957 42 | Aurpul 2620 19150 13709 5061 138626 3820 71094 31739 44114 8672 4305 247 7719 30319 7377 10359 446 1072 43 | Babino 3763 17486 13106 3222 53759 3176 61025 50914 45356 4008 2481 270 3677 12523 3531 2492 140 1255 44 | Baucom 3715 7464 25749 2282 105629 3788 31916 23133 82464 6476 9207 670 5626 26524 4441 11151 499 2485 45 | Beabas 3656 30159 33910 6488 159136 5943 114843 75422 99845 11669 15477 1708 8316 36010 8249 14303 759 3888 46 | Blugra 10201 203892 45224 30334 401857 11437 665056 391755 167650 24394 12967 591 24151 79386 24392 29103 1058 2167 47 | Botfuc 4166 83763 14760 16205 161205 5291 287457 149547 58926 8772 3139 192 14032 34060 10261 8936 266 1021 48 | Canalb 1005 47913 2314 4780 35184 1313 197072 116783 8166 2009 197 6 3875 6433 2928 1485 42 110 49 | Cerzea 4202 31826 28067 8861 147339 4414 133455 166489 101092 9596 10770 896 8909 37988 8289 15284 585 2575 50 | Chathe 3964 18366 28388 4170 123357 4655 68152 52477 99109 9078 10948 734 6027 26897 5513 11479 674 2403 51 | Clagra 3559 54068 18633 9680 142669 5706 236410 243987 73486 9258 5830 364 10151 30274 6585 10644 505 1326 52 | Clasph 3162 14472 31225 4224 119736 3613 50475 21152 95834 8019 14375 1293 5382 28665 5124 12130 750 4234 53 | Clafus 3206 92501 25409 11774 160987 5347 433788 737551 88460 11035 10808 915 10270 39024 10042 12175 487 2245 54 | Clalus 1315 18618 5686 3468 50120 1171 67559 36122 20606 3149 1698 183 3774 11316 3262 2714 91 490 55 | Cocpos 3335 39990 17406 8548 107189 2923 135105 91100 73244 7794 5265 298 7710 22762 5609 8742 412 1376 56 | Coclun 3625 23070 21550 5989 165561 5415 83465 49153 72751 12893 7436 580 9203 39372 9351 11833 525 1800 57 | Colglo 7944 38855 57852 11093 259392 9728 136246 69151 201719 18510 22406 1569 11782 56134 12075 22487 1219 6358 58 | Conapo 3924 16866 29177 4626 110712 4049 66758 74927 98979 7472 10962 1022 5272 25171 4803 11947 562 2856 59 | Cormil 3753 24860 38794 5205 141395 6648 106320 115906 112073 11662 18979 2324 6240 30627 7209 12928 853 5052 60 | Crypa2 4573 34858 33106 9325 187267 5859 137651 89344 113370 13077 13217 977 12106 42184 9047 23142 1606 3253 61 | Cybjad 2087 16659 6030 3812 47301 1962 63285 39959 18696 4053 871 20 2635 9069 3421 2367 52 648 62 | Dalesc 5127 43902 24989 9382 130019 12469 167684 144827 97726 7953 7282 529 9463 31074 9973 7808 377 2072 63 | Debhan 1113 35433 2717 4919 32425 1299 136044 92643 9090 1716 258 15 4045 6550 2331 1453 25 131 64 | Dekbru 1248 26681 4849 3988 35518 994 92705 64892 22315 1427 1219 34 3924 8249 2307 2368 61 218 65 | Didexi 4634 18608 27533 5086 147734 6056 81961 76289 83764 9865 10205 1064 7366 38484 8357 20010 914 3103 66 | Epityp 2394 47100 19603 7991 137222 3535 264001 373194 72929 10262 8233 605 7219 32475 10192 8279 503 1731 67 | Erypis 4571 189577 18093 22414 232579 6008 657631 471707 72457 11960 4002 361 18325 47920 16369 12600 350 719 68 | Eurher 4636 26912 20295 7679 112562 3827 100406 56213 84323 8756 4938 373 7479 23008 5577 8320 393 1783 69 | Exoder 4550 19261 26517 5764 119066 5124 70413 41430 94707 9578 8750 664 5767 24215 5703 10897 483 2212 70 | Fusoxy 6656 52780 34449 13671 269930 9465 213780 154724 128728 18219 10203 597 16362 54083 13714 18991 881 2406 71 | Gaegra 6435 30188 64662 4436 173698 7618 113761 115752 213474 16561 33578 3754 7086 39400 7461 17816 1488 7265 72 | Geodes 2749 24315 18142 6420 105688 3353 95935 71210 66016 7761 6352 587 6520 21889 5385 7471 290 2341 73 | Gibmon 4291 33700 22368 9128 196809 7219 138343 95546 83881 13235 6378 371 11248 38612 9572 13170 556 1677 74 | Glaloz 4295 56783 18882 12649 143865 5385 196991 112867 71742 8531 4800 304 8468 30676 9218 9333 311 1490 75 | Glotra 5984 23131 29162 7199 149624 6432 82762 44203 121998 9719 8911 515 9756 35055 7893 15490 931 3393 76 | Glogra 7004 30493 51185 7427 192168 9634 168633 235925 174538 14560 21056 1515 9004 42308 9419 15099 1004 5404 77 | Grocla 5767 16531 49083 3230 106212 3020 69452 84303 132437 8240 21779 1651 5866 26912 5525 17759 1068 3754 78 | Hanval 322 40348 828 2465 19699 461 146893 127523 2317 911 15 0 1906 3725 2060 818 26 26 79 | Hypbur 1942 38651 4439 4803 30238 1663 154843 104718 14709 1930 369 15 2710 4501 1699 1403 17 224 80 | Hyp_sp 5458 82217 26539 10644 152313 10999 422444 596072 100888 9595 8165 554 10028 36619 12832 9003 513 2039 81 | Klumar 1508 20162 3739 3853 33510 1833 76281 55057 14423 2215 476 30 2874 7077 2355 2030 74 267 82 | Kompas 987 17592 2588 3141 29125 1276 64796 37387 10249 1851 364 14 2084 5462 1916 1922 69 151 83 | Lacklu 2101 23917 5879 3255 36278 1950 75757 53610 17563 2471 933 44 2424 8239 2794 3027 109 449 84 | Lipsta 3358 31490 15389 6328 76419 2788 115976 66056 54399 4323 4416 395 5560 18037 4342 6360 202 1256 85 | Lodelo 1405 33617 3428 3152 38109 1600 137380 81351 10732 2296 388 13 4323 8625 3374 2590 60 203 86 | Macpha 6940 40718 57800 10016 186536 5794 153987 155547 190767 14030 24774 2342 9144 43275 7365 20605 1159 6623 87 | Magory 6786 40406 45549 7830 172986 10609 143845 88848 155566 14146 18100 1349 8888 39214 8797 16465 1353 4239 88 | Marbru 9241 65558 32247 13299 123043 8033 300573 592611 112969 9420 9104 1199 10181 29056 6488 10529 495 2082 89 | Mel_sp 7203 65793 53483 11407 222995 9331 347538 414288 197563 17404 21799 1608 10917 49373 10917 22826 1816 5384 90 | Metacr 4559 36876 32815 8211 192166 6186 148105 130876 115508 15082 12822 923 9856 42499 11693 12544 688 2698 91 | Metfru 3073 48469 15556 8299 107588 2590 153152 62114 53682 5819 5008 359 7065 22647 5908 5555 301 1502 92 | Meygui 2066 19864 5721 3356 38396 1943 75046 30093 18512 3278 821 83 2647 6964 2184 1790 103 400 93 | Mycpop 3934 22164 23035 7919 120351 8457 78596 57179 87491 7996 7709 585 6283 33181 12362 11416 565 1941 94 | Nadful 1921 30670 6734 4335 36782 2364 115552 90129 21445 2344 1283 73 2422 6334 2138 1648 61 404 95 | Naucas 994 33244 2478 4659 35291 1764 121117 82968 9325 2637 254 9 3373 6319 2553 1639 72 142 96 | Nechae 6213 32655 38467 9365 246407 8079 146083 133963 143442 19738 13379 819 11423 46267 11496 15647 932 3067 97 | Neofis 4870 29825 25956 8130 142151 5181 115921 78273 97826 10654 7811 570 8583 27814 6163 13614 825 2362 98 | Neogan 2677 30041 19733 6193 135686 3580 139246 137139 70633 10020 7847 553 7963 30453 9453 7888 434 1716 99 | Neucra 6275 39127 36490 7533 156293 10750 168025 143082 128218 12050 12019 751 6490 31437 8227 9620 497 3226 100 | Ogapar 1294 14072 6532 2312 29342 1029 46616 19945 21584 2009 2075 187 1497 6057 1768 2982 81 495 101 | Oidmai 4552 56361 26793 12232 171993 5981 211437 168635 108237 12131 8623 609 11339 37261 8692 16367 757 1867 102 | Ophcla 2074 20251 13211 3751 62761 2595 77875 67596 49472 4634 4807 329 3009 14196 2963 6005 365 1401 103 | Pactan 740 58576 1552 3817 26002 878 202105 142082 5529 1161 141 23 3005 4566 2040 2135 54 71 104 | Parbra 2724 49744 13095 8975 115355 2678 177882 142777 60237 7730 3623 216 8234 24443 6504 9748 416 883 105 | Pendig 4140 34010 18135 7404 112124 3797 111616 57489 73428 8324 4662 290 6595 23419 6226 7493 386 1689 106 | Peripo 3757 33865 25340 8585 182329 4696 127346 55944 90382 12420 9380 696 10522 38644 8945 12589 610 2100 107 | Phanod 4163 29145 24696 7375 186818 5666 114016 87456 85037 12613 8655 631 10980 46879 10886 15205 623 2583 108 | Pickud 1254 25418 3256 3775 34411 1393 90024 55418 11222 1966 460 17 3081 7817 2945 2139 51 185 109 | Pyrter 4799 22330 24704 5735 178293 6655 84766 57773 81522 13543 7988 611 9371 44217 11924 11905 510 2024 110 | Saccer 1439 32022 3791 3987 35965 1718 104107 70653 13151 2159 540 35 3215 7367 2464 2203 83 234 111 | Saicom 2798 8948 12298 2976 53277 2786 31165 18748 43715 3585 3198 232 2497 11062 2725 3122 100 1551 112 | Schjap 1682 17498 6009 3669 38125 1254 70894 54187 19354 2065 1218 65 3074 9504 2774 2778 75 391 113 | Sclscl 3991 74896 13229 13736 142085 5154 263838 157880 55145 7780 2546 207 13583 27404 8195 7802 286 824 114 | Settur 3530 24162 26577 6411 205277 5243 96672 90169 86915 17267 11002 1097 11534 52099 12179 15550 741 2449 115 | Sormac 7321 25404 39992 6717 169126 9460 89836 59846 138673 13320 12748 899 6862 33462 8853 10024 498 3683 116 | Spapas 1632 34192 3879 5173 42882 1657 140073 86276 13377 3021 317 15 4035 7912 3199 1639 49 254 117 | Talmar 4588 33512 19139 8392 122048 4032 127559 68897 70443 8117 4882 296 8969 25966 6995 7347 295 1438 118 | Tapdef 2075 15263 9528 4042 61683 2121 53996 13547 36159 3695 2731 126 3442 12829 3470 5830 308 666 119 | Thelan 3061 19877 20469 5782 87897 2954 65172 27276 81128 6715 7427 725 4915 17764 3572 8180 468 2017 120 | Thiter 5077 16441 56511 5161 121264 5989 70835 86312 186060 10557 27661 2789 4517 27600 4584 15524 1198 6804 121 | Triree 3506 18317 34189 4930 162383 6901 77916 68721 112977 12232 15307 1156 8326 37884 9549 16422 893 3345 122 | Trirub 2902 21344 17324 4844 92389 3136 76938 60931 63034 8100 5733 350 6825 18127 4122 8655 471 1112 123 | Tubmel 32406 145974 75775 34620 502319 25037 570497 434560 282340 30722 11565 496 25815 102135 35284 29305 1960 3776 124 | Uncree 3174 29427 16930 7422 89665 2448 95692 54870 68361 7195 5209 323 5850 17780 4076 7327 373 1327 125 | Vanpol 1782 48661 2973 5897 34303 2470 192124 141326 7543 1763 125 3 4152 6646 2887 1588 34 121 126 | Verdah 3950 16270 38475 5298 175342 7945 60722 38053 116170 13884 18473 1496 6435 36498 8690 13907 948 4586 127 | Wicano 1504 85235 3743 10136 74826 2293 311232 182753 10605 4000 319 23 5400 11136 5332 3049 63 143 128 | Xanpar 5405 28168 26467 8255 124276 6179 104973 88031 101100 9646 8083 530 6643 24626 5577 10412 617 2207 129 | Zascel 4332 22807 31932 7747 179081 4715 75318 36092 102492 12934 12031 813 9047 42726 9248 16640 734 3608 130 | Zymard 4436 20663 30204 6705 147011 4292 68102 32264 108460 10017 10852 707 7437 34828 6977 11456 514 3453 131 | Agabis 4664 44061 16343 9459 123426 4078 141313 76175 67583 7190 3482 288 8018 24948 7757 6683 327 1223 132 | Amamus 4999 42338 18248 9929 160476 4958 142678 79430 71743 9377 4106 307 11055 35007 10149 11297 527 1331 133 | Aurdel 10881 36626 90245 11563 296253 10308 116947 54419 329771 18274 37994 5170 14935 77565 12006 35989 2373 13828 134 | Bjeadu 6059 29255 33057 8611 172055 6739 94773 37594 130422 11265 10953 1357 8583 41086 9665 15082 933 4117 135 | Botbot 5889 44156 33938 9708 186222 6530 134461 76958 137283 13502 11346 1096 11996 43248 9045 15022 827 4200 136 | Cersub 5802 27392 30080 7875 182615 5979 95876 36351 126502 9165 9757 1083 12426 48020 10695 17209 1099 3581 137 | Conput 6127 26959 31239 6883 196461 6148 95178 64819 117645 11750 9806 752 12778 47703 11429 14649 764 4031 138 | Copcin 5764 32343 22033 11218 131697 6840 105279 58224 92551 11047 4850 333 6670 25360 6725 9985 630 2226 139 | Croque 4945 110345 15455 16394 254707 6836 384635 234432 60708 12672 2952 136 14511 62376 25332 10552 461 962 140 | Crygat 2581 16026 10987 3481 69127 2634 59990 40022 36354 4199 2606 184 4937 14891 4149 4489 212 869 141 | Dac_sp 4405 17358 19936 5326 137501 4266 65230 32650 82572 7479 5468 315 8380 33708 7619 11060 655 1832 142 | Dicsqu 6321 17810 33739 5946 184387 6918 65489 27809 141543 11065 10817 1321 10199 44818 9635 16472 1059 3673 143 | Fibrad 3785 26982 18372 6755 133132 3594 92140 41564 74756 7035 5641 598 9232 32455 7483 11548 586 1970 144 | Fommed 3167 67183 11912 14381 174090 4592 308747 280403 60755 5757 2707 261 17178 50700 19377 11577 432 814 145 | Fompin 6639 16613 36466 5734 194015 7197 62967 27343 144706 11153 11949 1547 12002 49368 9529 17804 1198 4611 146 | Galmar 7584 96501 31849 18382 217252 8214 292635 165859 126638 14519 8326 464 13366 45458 12339 17087 1095 2694 147 | Ganluc 7523 22013 40498 7177 191288 7374 73436 46159 172437 13395 13347 1899 10662 45796 9760 15672 1070 4630 148 | Gymlux 7582 112604 27062 21341 258672 8957 355442 183067 115622 14387 5801 307 22112 56126 16283 23396 1013 1776 149 | Hebcyl 5209 58863 18618 13422 147533 5189 172216 84892 82125 10990 4300 375 9800 28785 7616 9100 570 1789 150 | Hetirr 3752 27880 22212 6479 149707 4035 95794 46667 84172 8699 7812 932 9927 34440 7708 11287 706 2993 151 | Hydpin 5167 29642 19881 7558 157049 5791 98885 55990 83167 9875 4771 332 9504 35033 9031 12549 674 1934 152 | Hypsub 5400 58131 35025 12317 197428 6542 192475 90215 131351 12159 13191 1365 14447 50433 12015 18039 1068 5676 153 | Jaaarg 5402 43453 19859 12031 166631 6613 139848 60468 83775 12203 4407 252 10056 31355 8884 11096 648 1749 154 | Lacbic 9661 91496 25776 17027 262853 7708 278997 136943 100777 18197 5433 374 16867 54901 16247 16904 1311 1643 155 | Malglo 931 7374 6609 1799 61901 925 23313 9859 18626 3320 2456 194 4880 17996 3304 3224 150 676 156 | Mellar 11442 204257 32616 33598 373270 11592 692671 382570 134061 16023 5700 404 24591 80107 34556 15256 776 2175 157 | Micvio 5081 17170 26690 5042 85950 4036 58286 24386 90667 5422 8410 594 3642 19539 4240 7137 381 3186 158 | Mixosm 1883 6399 14518 2039 63463 1372 22772 4634 38897 2741 5732 283 3830 16696 2333 8354 359 1093 159 | Monper 4476 32555 15101 7896 108608 5136 102406 55058 63711 6663 3140 183 7055 22570 6549 7313 378 1106 160 | Mycthe 5625 25403 46864 7086 119875 7387 104190 136099 173607 9497 20531 2116 4729 27695 5742 12146 952 4895 161 | Ompole 3978 37613 14063 9264 111055 4235 118293 51251 56918 5607 3079 162 7826 23926 6810 9163 416 1150 162 | Paxrub 3481 54516 12626 13020 310836 7965 182311 87796 71073 21906 2671 243 21565 67545 19633 20235 1149 1045 163 | Phacar 6873 30507 38189 7325 204712 6807 104213 64250 134559 11084 12889 1285 11771 54868 11640 20653 1220 4363 164 | Phlbre 6971 35079 32822 9456 218927 6915 123100 66099 122854 11135 9917 1006 14687 56773 12669 22789 1259 3732 165 | Phlgig 4513 19428 26387 5283 132497 4988 64531 32912 93802 8014 9648 1443 7240 33043 7359 13541 867 3805 166 | Pilcro 5576 79606 21818 13278 243679 7241 270165 143375 92388 14993 5022 358 18973 55736 15936 17016 810 1520 167 | Pirind 3660 21418 15605 5857 97242 3579 73337 29508 56973 7221 4081 260 6458 20723 4815 6933 288 1236 168 | Pismic 6643 44251 21605 10709 270033 8345 146400 71235 89475 16826 4141 287 18558 62670 16563 20377 1152 1708 169 | Pleost 4072 29714 19239 9304 141877 5236 101972 51044 83232 9819 5633 464 8997 30558 7997 9800 517 2038 170 | Plicri 5520 28121 27205 6625 142083 4822 88536 40059 103430 8210 8474 918 10061 37825 7771 13667 787 3745 171 | Pospla 11110 39790 60966 12330 342246 11068 154460 73502 221935 18192 20154 2315 21447 87320 17679 30929 1912 6239 172 | Pucgra 11181 179377 42433 29250 316747 16812 563039 300662 167099 17476 10624 360 21616 71575 29401 17388 1377 2757 173 | Punstr 6737 18032 36545 6079 153022 5689 59419 29874 139244 9544 12058 873 9641 36491 7143 11558 769 5009 174 | Rhotor 3312 3229 26150 1494 52791 2248 11682 5196 75413 2472 11007 733 1437 14677 1894 8466 610 3009 175 | Rhoglu 3196 3098 25825 1397 52703 2311 11828 6105 73962 2484 10765 739 1361 14811 1953 8257 588 2996 176 | Schcom 5142 17964 38139 6016 163663 5533 57990 22348 134735 9711 14641 1153 8086 40525 7187 16599 1082 5581 177 | Sclcit 6935 49621 20946 13048 290311 8281 171055 91501 90208 19538 4369 282 19691 66253 17548 21282 1161 1751 178 | Sebver 5162 38349 23475 9690 136227 5868 130346 72762 85128 8806 6117 364 9961 29747 7390 7610 368 1719 179 | Serlac 5006 49720 15691 9198 194865 5370 177289 107535 62649 13187 2734 159 13102 42263 13861 14182 612 1112 180 | Sphste 14036 184712 53606 39222 523239 15641 672281 457538 217136 30948 13287 869 45227 115581 34807 37014 2226 4051 181 | Sporos 4351 16819 13565 6246 40645 4421 43056 7569 60972 1696 2547 172 1195 8256 2247 4868 179 952 182 | Stehir 7342 34411 29709 9736 190196 6183 112278 51974 118570 11794 7366 505 12078 40268 9966 12476 615 3307 183 | Suilut 4144 45339 15040 9931 186880 5149 149102 79196 61852 10166 3443 277 13763 42424 10718 14333 838 1186 184 | Traver 7343 18566 44189 5942 190891 7790 61066 32399 181544 11408 15743 2593 10273 51822 10275 19942 1387 6172 185 | Tremes 4305 29672 12367 7773 119438 4482 101297 43092 52975 6395 1814 106 6691 23895 9362 4834 282 906 186 | Triasa 4083 5906 34290 2239 115571 3779 22313 17038 111478 7707 14476 1417 6698 29650 4730 12204 792 4647 187 | Tulcal 9076 52327 38025 14461 184533 8774 164997 97845 161973 13741 9616 679 10334 38585 9283 13991 831 3194 188 | Usthor 2757 10787 13823 3211 84838 2627 37490 18117 40777 4869 3769 170 5297 20830 4357 8834 301 1204 189 | Walseb 1046 17342 2639 3201 25923 1188 71788 50320 7865 1208 267 27 2589 5829 1794 1946 56 217 190 | Wolcoc 7376 31119 37038 8503 266237 7808 125743 68093 133804 13749 11735 1448 19324 70181 16965 22036 1242 4402 191 | Concor 885 152941 2120 8151 49790 1616 602363 616788 7641 1725 193 4 6959 10923 4219 2840 88 70 192 | Coerev 1803 25672 10270 3722 83278 2140 105794 92511 30941 4653 3270 326 7390 26047 6675 10216 255 1059 193 | Morelo 5220 25415 20406 6683 203293 7259 131579 88587 73997 16108 4557 304 12495 41349 10950 14184 905 1787 194 | Muccir 1916 56604 7017 9315 201553 5858 206428 116403 21544 11552 1493 83 15430 49243 16609 8816 161 371 195 | Phybla 3294 91500 10709 12915 168413 4966 418682 351748 40998 8610 1709 59 16985 44603 16629 8042 223 453 196 | Annalg 300 79225 786 4524 30025 654 271297 266795 4116 1118 119 6 5458 6277 2953 964 23 23 197 | Enccun 100 1880 537 501 9760 161 5210 4932 4488 720 167 4 976 2248 519 1173 45 29 198 | Entbie 191 16048 927 1022 12257 129 55231 41826 5302 755 300 18 1726 2760 913 580 28 80 199 | Noscer 219 48234 594 1348 15531 243 150196 151191 2390 337 64 0 2488 5024 2430 512 12 18 200 | Vitcor 91 8779 444 844 10498 131 26094 24942 1699 537 87 0 1564 2986 766 783 21 24 201 | Edhaed 1320 367570 2518 13315 98547 947 1058661 855001 10086 1385 193 7 19877 26980 13578 1850 24 68 202 | Nempar 164 8901 727 1143 12208 141 37729 35231 3122 587 186 6 2382 3680 808 1243 31 24 203 | Hamtva 675 81749 1262 4822 25505 440 229381 195153 5548 671 101 1 3450 6207 2832 595 13 31 204 | Vavcul 1360 12350 2996 973 25367 772 47407 35432 7274 870 297 5 2548 7325 2128 1450 52 103 205 | Pir_sp 2757 186478 4777 10899 71411 2873 807154 774916 14466 3912 129 6 7485 11520 6070 1214 28 159 206 | Danrer 80453 2454072 292918 228570 5985385 77797 11138641 13176189 1172765 171085 58546 4378 664503 1919065 617011 540398 26490 17025 207 | Diclab 4632 122520 18602 15757 447980 6039 577026 704831 71626 17258 4691 197 38791 127663 45269 60272 3039 1067 208 | Gadmor 60937 480688 281923 89040 2659862 56575 2548511 3092534 1157117 145401 85153 5880 247696 763902 231583 254345 18127 18649 209 | Gasacu 47297 424995 234978 75285 1872834 34862 2077881 2589866 904023 75421 72609 4904 146190 527746 189519 295200 20586 18246 210 | Hapbur 43890 1032973 150765 123137 3173409 46582 4031482 5067693 544671 103969 32076 1769 273247 927163 316874 451891 26315 8069 211 | Labfue 7272 97522 25060 13121 298724 7947 373268 459750 102460 11388 5468 363 22318 86378 28545 46933 2592 1116 212 | Lepocu 38844 1455695 170573 218948 3546899 66694 6397106 7103855 752350 140245 50578 2339 332923 943953 318755 474063 26833 9278 213 | Mayzeb 38844 1455695 170573 218948 3546899 66694 6397106 7103855 752350 140245 50578 2339 332923 943953 318755 474063 26833 9278 214 | Mchcon 6430 102552 22680 13374 311838 7738 391903 483872 94098 11617 4946 387 24361 90732 30166 48704 2804 1093 215 | Melaur 5652 94459 19811 12066 295449 7037 363357 449875 76077 10553 4479 315 23133 85748 28898 46469 2580 932 216 | Neobri 43208 1006906 148243 119145 3091510 45429 3978786 5025503 530584 100594 31951 1657 266069 908263 312848 446117 26251 7941 217 | Orenil 49450 1232379 174081 145361 3725077 53851 4740127 5939676 638807 123542 37580 2163 312273 1071183 377577 525724 31508 9519 218 | Orylat 50957 1184059 190643 136745 3121700 44298 4365264 5142792 788642 141853 49013 3415 261653 831069 314999 504786 27178 11655 219 | Punnye 45439 1027874 154428 122811 3173630 47328 4005741 5036797 555858 104870 32636 2071 271859 925175 315947 452876 26217 8090 220 | Rhaeso 8012 100650 27507 13948 294716 8521 383500 461842 115468 11950 5940 363 21890 84697 28147 45333 2338 1203 221 | Salsal 246473 2558802 673300 401729 11157800 355793 12347178 12454193 2806100 627879 132300 3879 920902 2762435 997588 953477 49001 28981 222 | Takrub 32269 416565 145444 69713 1438348 28472 1642249 2005945 597838 65401 43802 3644 97571 387920 133387 269873 18649 13357 223 | Tetnig 31407 354850 166534 53593 1164318 24893 1345514 1604433 672923 56581 55197 4696 78555 331143 105154 259027 18482 16958 224 | Xipmac 36578 1196615 147395 104024 2738765 37366 4699254 5273751 589538 94843 38249 2465 243366 763066 284900 421561 22740 8513 225 | Oikdio 7098 293587 28619 30919 164444 4593 768990 450628 107666 5843 6569 394 12252 38029 11482 11848 276 1666 226 | Cioint 10854 272897 25811 22842 435011 8972 1065433 1185414 97088 20113 3778 224 38103 111249 42424 20319 598 1643 227 | Calmil 32094 1187309 159974 191373 2581512 55497 5311473 4384581 900869 145455 37085 2397 216831 592062 219183 398425 10572 5214 228 | Leueri 73176 2431334 368326 379903 6850863 112529 10736140 9396317 1693664 340340 104260 4589 520002 1614168 530974 854238 26241 16581 229 | Braflo 65279 894817 187507 108543 2418882 77304 3039317 2465589 728274 114289 43804 2522 177034 738839 361897 175430 9609 13103 230 | Petmar 106272 864652 349327 167506 2700228 64510 3677563 3637417 1224656 160000 100986 9083 237998 757959 224818 275840 15140 42914 231 | Ailmel 59073 4630195 348136 618419 9235266 202890 15084055 15358106 2099503 515931 126102 7194 632494 1937303 658435 777099 62433 15142 232 | Allmis 72271 3050691 344887 411246 10745921 249215 11734319 12039988 1745900 736516 123513 6776 864828 2793937 723736 1571886 109738 20215 233 | Anocar 44676 3045325 373807 480715 7849943 164388 11721986 10561773 1600760 491172 209751 6620 612003 1652504 530164 615704 26130 8495 234 | Bostau 58795 6502432 347100 1021325 15768953 261135 20484930 19297639 2284894 1950929 135461 10013 1002382 2859247 987135 1807626 77723 17226 235 | Caljac 48151 5627601 302364 709233 12928925 262060 19842789 17399415 1846769 677215 115008 6898 813121 2852083 968279 1137462 66900 11957 236 | Camfer 47191 4194024 295375 553218 7790369 198666 13766614 13527633 1643502 444077 112139 5863 575348 1817366 617926 852737 66645 13864 237 | Canlup 50375 4830484 314697 604132 10553430 229056 16090783 16085254 2520640 550069 128822 13178 695742 2062094 697251 881966 99359 17518 238 | Cavpor 60325 6121477 289393 740499 11749043 361183 19240464 17314544 1667055 640856 104226 6983 858580 2580207 892886 1172872 79317 14265 239 | Cersim 49285 5122384 481216 638996 9420517 194285 17024987 15907980 2263225 555754 257092 8665 665521 2026801 717589 853424 61020 14227 240 | Chilan 50438 4923528 312289 582383 9851377 363302 15714737 14318587 2000556 555961 121068 8505 705596 2289231 768070 999522 66988 15084 241 | Chohof 36496 5261963 180867 1013489 8388343 219386 16651976 14425930 1058191 608696 56475 2948 666202 1739989 614390 703795 37593 6353 242 | Chrpic 95719 3475991 537917 518692 9293452 230723 12736894 12756043 2641188 617633 196402 10128 694629 2177322 608176 1351349 75195 26602 243 | Chrasi 61166 6086850 235695 873701 15091514 346368 21758081 20697998 1241197 1324945 63441 3683 1355758 3054623 1261075 883413 46079 9864 244 | Concri 39669 3452957 309305 438642 7005618 133764 11465769 11570188 1679441 377152 137047 11599 640844 1498885 557023 768975 52998 17155 245 | Crigri 37278 4078578 184765 647076 11714785 250171 14099132 13742170 1016895 728413 54379 1684 822681 2798165 937170 836838 57300 6879 246 | Dasnov 57468 7234093 471237 940465 14059949 308910 23804784 22002093 2744024 941526 215907 24294 1004349 2708394 933759 1199308 84954 26576 247 | Daumad 51892 6633755 250899 788610 11934939 259673 22088773 20406806 1442219 700974 79413 2301 904021 2715688 990400 1071775 75383 9318 248 | Dipord 44143 3195442 253661 513912 7557930 161204 11181307 9989306 1658927 429212 99888 5933 658326 1687521 526457 540543 37093 30979 249 | Echtel 91122 4186455 448441 676658 11817060 246679 15602354 14086759 2403997 844003 149605 6332 891610 2603159 857939 986697 80735 20793 250 | Eleedw 84945 5978821 279837 753236 13952970 332023 22611016 19830214 1451561 1303498 75932 5370 1254279 3079391 1113756 1267267 57681 12450 251 | Eptfus 111059 3432139 564476 433481 7574748 156604 12006032 11528391 2677081 471438 231920 17268 581700 1934955 554127 804647 116544 23730 252 | Equcab 64348 5110637 463095 670181 10030216 211560 16716213 15638921 2491013 596755 211095 7623 677124 2277740 719665 943073 67855 13338 253 | Erieur 66219 3918338 379650 520778 9384352 162413 14293384 14682923 2033982 456138 94173 6017 625215 2193993 867781 2151143 612733 12695 254 | Felcat 67210 4786776 383524 647393 10015125 209571 15515503 15936958 2230836 510354 135423 8564 655073 1978817 701120 731687 55915 17190 255 | Ficalb 17062 2264325 113877 310128 4388428 95321 7506464 6693997 712731 335132 44864 5766 336287 957327 284938 863721 56074 9221 256 | Galgal 25054 1598430 124968 234043 3999351 82460 5704019 5689977 637837 238920 47244 7394 356979 949581 250582 735707 40150 8910 257 | Geofor 14432 2251685 85301 301795 4512839 92271 7478206 6659061 527147 349269 31496 2849 338052 975079 297394 840841 54909 6136 258 | Gorgor 54302 5660041 295691 770613 14385896 249499 19729403 17653813 1962947 677968 104293 7127 872252 2813821 975132 1143340 67436 12303 259 | Hetgla 38674 5348930 235577 606921 9899796 410522 17144671 15320416 1698905 587542 90823 6601 726700 2193085 802460 936836 67286 11692 260 | Homsap 48382 5713016 294067 717038 12954485 262263 20323958 18030673 2149603 689639 110835 7881 838992 2797234 969929 1186489 68762 13032 261 | Jacjac 38779 4963645 220650 1019638 13285136 278563 15475373 15387183 1453059 741173 82945 5336 1192194 3650970 1057944 822349 50533 11302 262 | Latcha 73100 4297953 303920 402211 9191361 230049 14672236 15850100 1687083 545515 94219 3555 824809 2354982 683514 921106 48963 11780 263 | Loxafr 79488 6353222 323766 893134 12574154 299082 21143650 19166490 1823882 1054688 96227 5514 948061 2556502 971119 1036147 60296 12897 264 | Macfas 46440 5215157 256434 679749 11553189 231825 18438980 16653418 1832028 607447 89830 5297 772691 2499132 875434 1054546 60840 10039 265 | Maceug 24162 5916843 101848 875954 10420518 239715 19605311 16886136 693266 562018 31233 4751 805904 2187724 869679 582386 30737 4465 266 | Melgal 18098 1777990 78036 245988 3958937 72361 6233559 6005022 386306 213190 25004 2067 366880 959573 258532 706706 36802 4799 267 | Melund 27303 1823542 116666 258679 5144573 110343 6631778 7011532 535116 350674 35277 3473 405089 1202822 355683 786208 39703 7248 268 | Micoch 53614 3624758 254381 566073 9981769 241734 12250541 12562043 1473493 617911 77191 4197 707737 2462632 757011 875544 68337 10659 269 | Mondom 30812 8597395 167575 1280045 12623034 284621 30505199 25958314 1113073 741008 69176 3578 996690 2556556 1120394 617950 33019 7008 270 | Musmus 44767 3824889 211110 596296 10942164 242930 13164157 13188185 1242659 686418 64977 3638 802802 2680331 868512 859919 51583 9333 271 | Musput 60134 4764829 367605 633001 9867926 218701 15354958 16143422 2103612 551278 144084 10019 632507 1937961 691322 745519 57402 18244 272 | Myodav 133375 3541225 540107 446562 8013828 161252 12399781 12042843 2508219 500532 192954 7401 596547 2055757 581946 809842 83312 18660 273 | Nomleu 48147 5558551 272931 735006 12296527 251381 19597546 17316195 2037648 655957 101483 6987 808847 2668070 913499 1154733 65197 11681 274 | Ochpri 73739 3500880 447319 506092 9101658 195948 11415090 10940331 2193494 572916 117098 9934 673061 2089019 656105 991879 80120 14034 275 | Octdeg 45252 5251427 359281 650826 11218971 272078 17114419 15524338 1979894 584943 176500 8030 755169 2729911 790487 1153361 81119 19055 276 | Ornana 83436 2363709 469986 404694 5967272 145634 9105978 10203780 3556444 351635 159648 8158 331754 1027088 354405 540025 32291 20813 277 | Oryafe 51425 6644834 234055 938044 14651170 273613 23307564 19815800 1257480 1234118 76957 5196 1160613 2871875 990705 1086734 55416 10571 278 | Orycun 101180 4841373 1300175 677688 10641128 265917 15894864 15449479 4523413 841310 796557 14845 801977 2109112 674742 1368225 93618 29188 279 | Otogar 45120 4834755 331475 620747 9454891 228194 16458228 15482888 1699060 701699 120241 5706 624836 2061046 784730 909338 68507 11199 280 | Oviari 48676 5086451 274201 807134 12164305 203886 16016685 15212323 1776704 1439132 103219 6818 762896 2278123 754299 1382313 66162 13924 281 | Pantro 49839 5781530 293827 742082 13022912 260018 20443273 18117045 2112030 686999 109418 7871 845750 2803386 974665 1176522 68074 12920 282 | Papanu 57945 5644574 307970 747331 12606464 261907 20220929 17861680 2414762 673237 110834 9358 822322 2737421 955977 1159889 67456 12990 283 | Pelsin 94642 3251035 498452 439912 9460919 207821 12192232 12260514 2965239 654967 194192 8419 652232 2262713 580263 1313971 79807 22323 284 | Ponabe 54361 6326352 314589 794930 14047564 289806 22271582 19576433 2209855 743994 118662 7710 923734 3040286 1065086 1276290 71534 13399 285 | Procap 58943 4565547 250173 687428 10050186 238719 15159635 14363614 1402089 644419 78372 4892 699476 2294684 881448 903341 51771 13462 286 | Ptevam 50839 4202765 296393 530225 7149986 168259 13967867 13387165 1627958 402877 114755 9671 572449 1622232 595772 657619 43200 16728 287 | Pytmol 23448 2247742 102518 373201 4982168 96227 8662766 8218588 501245 285148 30102 1588 487660 1173268 364903 512051 23528 4298 288 | Ratnor 58490 4375426 260856 738865 12129458 273629 14822158 14484874 1619822 724205 76423 4470 850986 2959213 985227 944130 56614 12131 289 | Saibol 44243 5044332 266918 639227 11487336 227240 17754193 16036978 1743409 593423 96543 5888 745637 2551291 865941 1042909 61999 10936 290 | Sarhar 25939 7881506 149057 1079415 10087810 215639 27779542 23166560 982760 477434 56028 2890 947106 2160580 1015439 510750 28642 5298 291 | Sorara 58554 4332241 422845 507862 9154007 224130 14527004 12729844 3201876 544302 181025 19223 661627 2269225 638572 806520 68103 22281 292 | Spetri 36562 5356256 219892 644511 9953167 239069 17712098 16146480 1326112 570002 81893 4638 784983 2357409 785478 883916 70925 9872 293 | Susscr 5583 488641 39878 66974 1040820 24706 1575652 1595417 210649 70577 16237 593 70558 220017 74609 129882 7873 1343 294 | Taegut 20514 2678003 140599 352635 5199781 108080 8936153 7975264 825170 392189 57307 7833 394762 1137185 356296 951080 63451 11668 295 | Tarsyr 60291 6384698 274078 1267445 11917353 280535 21167097 18636135 2284343 610919 89705 6660 832393 2798832 902587 965807 66788 11589 296 | Triman 68805 5655518 293074 780476 11298528 229121 18729467 17449743 1658250 861578 98754 6323 841433 2374550 913216 941497 57310 14004 297 | Tupbel 45900 4070623 280500 491628 12017767 172412 13680993 14361225 2088747 677901 114709 4659 799861 3381062 922930 857385 55653 11269 298 | Turtru 60194 4712459 344715 637864 9460508 248291 15714635 15343696 2426534 700898 130416 9066 651606 2315214 705140 932556 62685 15358 299 | Vicpac 40635 4822112 283261 1009483 8165466 169253 14683727 13502289 1324441 436570 71077 4025 701490 2133674 686339 740635 99902 9781 300 | Xentro 58116 2359023 274092 308511 5417670 191231 9595641 9482146 1214709 302748 82153 2101 484117 1445708 503437 676676 36466 35237 301 | Acrdig 29663 1022144 89243 113358 1386141 28131 3379760 2636915 364020 61793 17698 717 115085 331250 110479 77786 2628 4463 302 | Nemvec 23245 576533 84277 73478 1165051 41970 2016060 1805634 353229 61572 17909 1626 83065 295520 102910 49548 2045 4761 303 | Alamos 206763 3046276 716452 379606 5347827 248760 10227554 9309355 3465306 280543 177097 18457 406939 1365987 454089 318352 12887 54502 304 | Hydmag 43587 5043926 112838 218068 2821992 59406 17128365 17847153 456753 91773 26850 921 398950 794414 323061 128831 2885 4206 305 | Mnelei 13865 434643 43286 36642 539617 17793 1407998 1189989 200836 25250 8179 1237 29919 122150 52050 39054 1569 1381 306 | Patmin 109899 1907578 302441 196336 4027399 140298 6757897 5023766 1081286 176234 64051 3932 333653 1311550 647901 188514 8505 12525 307 | Lytvar 71403 2335573 157336 250481 4331661 82074 8348495 6239585 678043 188053 24688 2296 405588 1178030 589288 128599 4745 13591 308 | Strpur 92455 1949406 195090 225282 4072941 82455 7543229 6171414 792599 136252 32349 2176 376605 1147221 573602 124821 5465 6121 309 | Sackow 55722 1526634 134517 171221 3398980 64078 6475683 4710230 496874 137946 17402 1314 371337 1068590 494326 108830 2317 8654 310 | Cragig 51497 1714897 92257 146668 2181704 39999 5883553 5253602 396813 63997 8462 558 270360 765879 424284 75080 2754 4044 311 | Lotgig 17263 1006887 34420 91762 1078663 23100 3476766 2825622 159362 36830 3458 111 84497 263653 135769 36190 1121 747 312 | Pinfuc 92459 4089972 195889 338788 5351818 120925 11634296 8290926 921632 174660 31848 2983 509338 1856643 1058748 128719 5582 7727 313 | Aplcal 40536 1247362 135165 122741 2150454 58088 4081692 3554619 665327 79032 28875 3372 152546 614646 250228 139844 4764 6934 314 | Ascsuu 20385 986844 61197 104866 779780 15157 2707700 1686763 232998 19452 11664 817 134511 196448 46951 61098 1173 2872 315 | Brumal 5967 470743 11721 30579 243415 7706 1498436 1085131 54472 5648 1113 37 41034 57025 17982 15958 439 404 316 | Burxyl 7661 342095 33826 26335 204422 5712 826590 351969 164107 11610 10997 583 13250 43913 17163 10870 364 1603 317 | Caeele 6944 617001 29852 41350 249487 6648 1565603 738702 144007 9180 5765 349 21792 59702 23141 12142 280 1578 318 | Hetgly 9430 561453 39278 32148 173601 6745 1538951 840796 172412 12410 11340 741 20557 37383 11441 7898 217 4586 319 | Hetbac 4111 239566 11478 24122 213434 4811 903183 773713 45717 7060 1953 126 28377 50734 19248 10042 227 419 320 | Loaloa 6395 470050 12622 34966 237201 5888 1466161 972238 63891 5872 1141 44 39370 57849 19138 11829 221 397 321 | Melinc 6201 612426 17150 24388 125941 6862 1680512 1270092 104591 5123 3606 173 12582 31637 13436 6403 241 421 322 | Oncvol 1536 137207 4179 11069 77815 1392 413277 259888 17875 1936 756 44 11546 18581 5516 3879 100 159 323 | Pripac 13486 298176 48755 58980 421253 12668 1076554 480040 221449 17233 12133 1249 38540 88174 24062 35504 1865 2851 324 | Strrat 4205 287259 16327 7665 109890 2695 996220 945629 54580 3517 1702 157 12374 23953 12232 3600 174 1316 325 | Wucban 5247 467665 10041 29754 198838 4649 1473177 1009836 47712 4279 840 46 38199 51088 16642 10525 175 341 326 | Trispi 5122 288918 21107 18808 179417 2494 915273 520775 61537 4482 5507 228 31164 54300 14953 11939 212 1502 327 | Triadh 7323 294488 16879 24550 306906 6674 1275676 1020262 49601 11101 2170 66 36792 66359 23153 17414 346 429 328 | Closin 112712 1084961 279068 185468 2046712 60573 3156463 2156454 1078795 91597 39287 1649 167087 512410 156731 132029 5017 15295 329 | Schman 26406 984779 82321 156389 1281194 21368 3678340 3172973 296395 67704 16884 146 124183 252899 126468 34987 663 2481 330 | Schmed 60563 4649661 154934 279467 2077160 44932 15726137 12121171 757026 80596 25833 1326 251210 476686 202182 62644 1363 4237 331 | Ampque 5910 359016 18539 27924 778228 15213 1434803 1175230 69728 25713 3717 175 91181 322830 194627 34521 1014 1152 332 | Helrob 10605 761134 37353 44448 686119 9686 2759403 2253910 130134 17607 8567 203 96431 214256 70595 33481 647 1509 333 | Captel 24220 586965 78462 93128 1393752 16450 2526080 1696450 342756 58512 16155 1215 173904 394655 132314 78006 3968 4330 334 | Ixosca 273590 3279409 1226499 417055 6366985 215842 10809035 9028557 4378897 288461 338831 39296 504852 1823402 455707 581540 20159 117003 335 | Metocc 23447 276877 117392 95263 509641 15854 656448 194369 615553 31554 39343 3533 30700 93746 21136 35807 1785 10646 336 | Teturt 5347 294945 11136 20137 292244 3461 1287200 997691 38029 9451 744 42 23087 40147 20484 6090 175 321 337 | Vardes 31915 514121 133117 63227 899107 31270 1962857 1783074 396079 31903 35610 3134 89321 257145 85472 67709 2353 7605 338 | Strmar 19003 724818 50864 54094 559961 21803 2357872 1714419 204559 23505 8664 1592 60913 153244 58946 32681 908 2105 339 | Lepsal 39009 2927482 86130 186435 2173493 44007 11173409 9205929 421967 91089 10802 303 239563 444007 204922 83331 2795 3063 340 | Dappul 17386 483328 76609 56843 455607 11126 1471502 997148 312398 24616 24017 1784 32885 105192 42798 30373 1186 5003 341 | Acrech 21404 1150686 81983 93750 768377 14910 4204854 3351336 308331 19495 19449 1992 111095 218687 87369 33339 969 6796 342 | Acypis 51630 1822247 141642 122588 1141011 118998 7495016 6813177 496593 41203 25554 3400 171324 306942 136038 96357 3092 10051 343 | Aedaeg 154096 5476433 454428 711515 4446671 148914 14414067 8402335 2130254 186143 97719 2919 402211 1043538 366292 238634 12812 25914 344 | Anogam 62208 613093 244523 62307 1035441 35165 2163094 1663569 911897 42271 60908 4272 100316 278055 72353 80911 3534 17286 345 | Apimel 22301 1189260 76405 92060 376449 7113 3883237 2788582 262482 13923 18382 1938 62712 94654 37837 12667 484 5220 346 | Attcep 18842 1207696 71232 95323 777015 12964 4385700 3466261 270962 18918 16763 1742 113539 219475 86547 31923 915 5789 347 | Bomter 29029 839166 95210 89447 519901 15882 2776707 2044516 314255 22013 19687 1576 66968 139800 55344 28128 1047 6879 348 | Bommor 73353 1140768 193172 104212 1103064 144697 4451263 4168892 756898 60265 39513 4775 124287 284426 125290 52151 1824 21464 349 | Camflo 18923 892972 77263 66487 570841 11941 3282184 2568947 300418 13311 20508 2408 93678 179380 72891 22038 757 6910 350 | Culqui 62208 613093 244523 62307 1035441 35165 2163094 1663569 911897 42271 60908 4272 100316 278055 72353 80911 3534 17286 351 | Danple 19289 897031 68370 67738 661278 16723 3505209 3645188 240209 21866 16789 1659 64697 179555 90844 26351 815 4466 352 | Dromel 8793 323165 61841 35738 393619 8588 1221086 978648 244336 23883 25874 1309 43872 109141 29618 47038 1940 5218 353 | Harsal 34558 699002 233723 89054 652372 18864 2351809 1703631 796220 21319 91661 12898 69391 199479 68489 41912 1685 30371 354 | Helmel 17096 890281 59196 100008 605966 27074 3478729 3407874 205382 17664 16573 2078 65300 182598 82521 25192 952 4729 355 | Linhum 23066 743860 111376 64864 516538 11545 2717961 2061224 381592 13485 34031 3443 82807 166091 57114 31053 874 12480 356 | Lutlon 4146 786669 22710 58105 387650 9116 2284618 1501276 162605 19454 8128 183 41904 74104 23702 22398 995 1445 357 | Mansex 40872 1104735 162367 92192 1096427 40552 4504910 4126777 519940 33176 53426 4107 115045 290101 118002 57509 1758 11928 358 | Maydes 12791 758654 42450 82488 487446 6809 2304061 1129823 139974 16010 8245 395 88867 114169 39451 10224 282 1867 359 | Megrot 62208 613093 244523 62307 1035441 35165 2163094 1663569 911897 42271 60908 4272 100316 278055 72353 80911 3534 17286 360 | Menmol 10928 970955 28569 48412 345313 8029 2892303 2528527 106890 8798 5101 437 39790 103927 52884 11383 290 1390 361 | Nasvit 19831 683677 121566 72858 549197 15083 2201333 1621495 439047 16789 45391 4911 75374 164068 45060 88801 2054 13746 362 | Pedhum 8460 722639 16628 27104 151193 6112 1954619 1667752 110492 4313 1938 232 17517 36317 16291 3582 151 722 363 | Phlpap 48029 2019358 81719 145845 876339 22527 5617686 3678388 390215 37775 8832 207 88697 172843 73243 48045 1239 7348 364 | Pogbar 21120 800503 93864 70630 546723 12692 2902472 2254928 345876 15280 26829 3075 78575 164828 62276 24818 786 9617 365 | Rhopro 28653 2137705 102239 172376 1239135 42913 7257180 6474523 530726 42672 32987 902 127215 292512 120099 92849 2923 3618 366 | Solinv 32365 1339019 145467 99940 861564 23896 4757271 3872772 547940 28375 41885 4719 116510 261934 102624 44808 1373 14340 367 | Tricas 13939 745507 51176 43404 319318 11301 2455619 1852061 210168 12000 10276 784 32056 86406 36366 17888 724 2908 368 | Capowc 2456 19390 21145 4383 113776 2120 61491 19698 61236 6363 8731 1134 6215 29400 5265 15576 508 2195 369 | Trivag 4181 761177 13565 85763 629236 7904 2112901 1498886 75681 22961 1829 90 57667 113167 50536 27460 614 341 370 | Bignat 6614 120769 25918 22871 454417 7860 426604 263465 105482 15686 6404 766 50085 150561 33843 28951 1029 2255 371 | Phatri 4530 35874 17866 7375 90042 5308 112755 43353 75301 7989 4186 394 4962 18781 5103 5695 194 1528 372 | Fracyl 11285 155814 23389 23392 248062 9703 603224 348569 73293 12417 2047 186 32908 57316 18173 13550 294 1273 373 | Psemul 57755 333049 158194 69040 850739 38608 1218843 490708 508807 51309 26517 1509 75478 171715 55081 40945 1311 11262 374 | Thapse 2237 18307 9261 5294 111566 3694 87666 42826 34824 6609 1894 125 12235 23252 6290 8544 167 887 375 | Blahom 1497 25049 6412 10022 59421 1520 99391 43102 27149 3111 1606 243 4756 12229 3536 6618 247 849 376 | Nangad 3696 30765 25130 5121 146119 4437 93441 53202 110147 10413 8928 1043 7702 35215 6946 9114 907 2239 377 | Hypcat 6875 35322 34005 8012 247874 9492 145789 144617 138944 17496 9542 937 11727 47756 10518 39935 2057 2435 378 | Aurlim 4089 82396 20396 15713 235789 9707 311131 231357 77814 13658 6504 606 19637 53026 11953 22452 835 1898 379 | Albcan 3883 62895 10453 13818 134246 3783 218865 84722 43044 4321 1815 111 14061 34094 8833 7468 231 676 380 | Hyaara 10901 79057 37245 15277 289228 11263 306122 255643 129897 13389 7703 669 19588 70944 20903 24188 582 2441 381 | Psecub 9827 58325 108956 12715 301628 7607 207367 122188 271574 21547 51571 3879 13198 65935 10833 45609 4344 12990 382 | Phyinf 39727 165967 133858 33221 725115 34011 608363 527338 534604 45324 30289 2331 40863 179386 57011 73872 2602 11259 383 | Pytult 5056 31111 23082 7233 202931 5881 118318 63277 70253 12619 7880 1911 12681 52796 8943 20174 589 3034 384 | Sappar 11559 18639 70905 4771 269910 11664 67062 37639 172403 23124 30427 4566 12142 64497 11367 20731 456 11997 385 | Aurano 6765 20323 137496 6021 158872 4145 51139 21661 414577 19498 96122 38448 2691 30839 5103 10870 726 44476 386 | Ectsil 36965 130260 204547 25776 890762 39168 415577 242145 727592 58799 67652 8363 59287 255321 64020 66831 3832 24702 387 | Cyamer 3321 11258 16156 3966 72841 4187 27057 11672 58310 4291 4783 540 6018 19528 2489 10096 377 1975 388 | Chlrei 17587 21790 242066 6243 555214 15306 99966 81407 634368 35197 133349 28141 28763 180486 23320 109575 9245 42437 389 | Volcar 19475 70941 149745 15067 607446 19256 279542 245982 537421 38144 60718 11198 46849 191088 37442 80014 6072 20059 390 | Micpus 3200 8381 32392 2187 41767 2650 18979 18063 121310 2640 16646 6476 1042 8632 2228 4115 130 12822 391 | Ostluc 1974 12325 15398 3552 35313 1168 28586 13488 43882 2679 6809 623 1228 7654 1647 1467 42 5565 392 | Ast_sp 2584 15876 35103 3478 480971 6093 67845 28745 93316 22901 18742 1450 24982 160254 18725 194882 26170 2011 393 | Chlvar 3766 5620 98877 1597 228400 6474 26223 13541 234458 15315 64349 11233 11239 79387 5972 81734 11699 14005 394 | Cocsub 4564 48754 46670 8567 376698 5296 167646 68443 133460 14353 23009 4085 37507 134242 16612 66975 4850 4932 395 | Aratha 10885 231160 24771 24929 328647 5881 810607 682593 101340 15333 3149 102 32582 74401 33414 16197 500 2053 396 | Betnan 42312 1456649 154703 131300 2139548 43350 5268595 4324747 568959 105240 39521 1867 202063 522336 191608 90845 3676 11237 397 | Bradis 36023 475255 261112 60443 1451889 35773 1654390 1096328 904876 95380 119898 10515 140797 378581 110235 96163 6555 38513 398 | Brarap 31550 723557 76800 54287 983475 17241 2574904 2499891 307198 42825 12022 556 96631 231140 105877 40716 1092 5711 399 | Cajcaj 25290 1825953 71792 136897 2155852 44942 6628465 5546347 325183 96052 14117 1287 256593 520529 204688 46742 1416 5025 400 | Cansat 33375 1667653 97898 151750 1948529 44743 6340559 5001896 435147 96068 21804 587 191449 450055 189980 58674 2114 4692 401 | Carpap 14801 930440 49890 79858 1088193 26356 3342810 2648656 289919 50233 9521 300 121052 260241 93004 42325 2570 2925 402 | Citlan 10931 1256653 35566 95819 1220591 20518 4470771 3623425 150386 51644 7498 378 141297 293939 110591 30416 850 3256 403 | Citsin 14203 1100770 51434 88656 1186178 26389 4077536 3155127 205456 46330 10912 406 138441 294213 103400 51809 1315 2973 404 | Cucsat 10351 788822 37857 64930 770962 13444 2815763 2266728 168960 35614 6808 415 86455 175434 69960 24533 1074 3362 405 | Euccam 62853 1988810 264732 204028 2971170 54303 6833608 4400711 949296 152614 76066 1681 292076 655751 212090 102319 3942 20747 406 | Eutpar 15565 374315 39054 33392 495577 8937 1314728 1105900 159681 23545 6060 320 49779 112836 50130 23791 675 2897 407 | Fraves 19481 522951 65094 58546 909278 19451 1818677 1291338 274278 37859 15621 633 98300 218335 78884 43513 1893 5744 408 | Glymax 45175 3177290 123639 287386 4399868 93124 11683539 9209953 584165 190034 23439 940 507024 1046843 367371 108003 3477 9562 409 | Gosrai 40314 3041649 103353 217076 3041277 73775 10664105 8640814 452160 118960 16325 755 342217 763632 303017 64698 1957 5405 410 | Horvul 213863 3171330 1127086 378149 10976106 223923 10378047 7000414 4189202 668927 431900 22403 953443 2400614 684001 320476 27735 130851 411 | Jatcur 22847 1067880 73472 92150 1029126 21655 3909934 2990550 297357 49316 12522 1913 139041 242652 82628 43320 1428 4804 412 | Lacsat 115511 2816547 242946 304716 5326054 118683 10007207 8582617 1074445 265251 28078 2108 512870 1205604 488611 106764 4267 12524 413 | Leeper 1708 34193 12433 3840 83026 1805 120272 85657 36800 4720 5719 531 8728 22086 6728 5000 240 2495 414 | Linusi 31599 700200 104173 95750 1152859 27684 2578346 1819546 395065 63684 25305 1182 115688 244797 87954 61407 2006 10266 415 | Lotjap 12407 418952 37221 50397 615704 13661 1428884 1085519 158468 28647 7083 388 58122 139067 49168 21917 913 4124 416 | Maldom 48531 2329495 185787 243704 3810012 69830 8421397 6284692 802234 167285 53932 1711 394223 912565 330042 133561 5314 10635 417 | Manesc 23626 1496780 91312 132048 1803277 31336 5340264 4475646 385127 70426 16076 341 238973 429155 116954 83658 2774 7809 418 | Medtru 30857 1188946 83801 103448 1530598 30804 4471397 3547532 283790 51742 17079 1463 186891 381686 162437 49112 1583 6417 419 | Mimgut 29578 999630 101537 94659 1193084 19282 4024094 2721335 441840 40233 18030 1313 117265 372716 114943 35587 789 8254 420 | Musacu 31797 909881 113737 124117 1932894 69993 3317638 2574716 481491 84130 30993 3636 206003 433334 152902 83967 3150 13245 421 | Orysat 55015 851814 371334 82994 1806543 43562 2881142 2136070 1064447 106979 158381 12932 176724 472365 152205 110757 6864 60912 422 | Phodac 44666 929367 136913 97292 1936343 45117 3219969 2422497 464207 96000 33896 1855 217478 446508 120745 81705 3411 8521 423 | Phypat 12080 1501378 52851 136649 1726089 32911 5406631 4029145 244318 69616 10508 697 169844 428455 180834 64525 2259 2888 424 | Poptri 29127 1347364 77367 118767 1926875 21561 5362548 4647148 320514 72187 15840 680 196367 446218 165790 72260 2778 4060 425 | Pruper 13201 623372 42745 62940 948724 17962 2239196 1539440 180647 46148 9157 346 95153 221176 76923 42305 1406 2305 426 | Riccom 18747 1144089 89332 116524 1311920 21981 4320025 3530582 308172 47596 31027 2818 150255 311837 109887 52441 2373 8134 427 | Selmoe 15357 318078 79128 51425 947644 26009 996043 804479 413772 76264 27288 2505 66114 191020 50294 42239 1448 8693 428 | Setita 57963 672583 351424 83905 2120646 55613 2374570 1604248 1127806 134682 155308 15023 192744 515611 146867 131412 7814 51387 429 | Sollyc 31133 2321281 83544 223043 3251578 56232 8514808 6964069 416358 108790 10087 291 333905 746452 306897 76914 7411 4407 430 | Sorbic 81619 1259109 421793 186192 3533629 84219 4331442 3069783 1521528 224151 160676 15851 348164 824481 256974 194323 10555 60401 431 | Thecac 14032 1033809 40429 83824 1343038 24494 3634329 2970951 141431 61988 7696 181 148996 304232 116397 53622 1427 2083 432 | Triaes 18221 269480 92009 32090 972725 16117 919001 633211 382720 60653 30112 1776 88347 215873 61670 30201 2073 9784 433 | Vitvin 34592 1591638 72465 133594 2185884 38431 5521600 4471596 341166 118861 11602 383 223173 444940 164710 60959 2325 3973 434 | Zeamay 22131 314645 142664 45801 833106 27904 1076945 808570 532214 53656 59801 8660 79747 202607 60415 62125 4134 22624 435 | --------------------------------------------------------------------------------