├── .gitignore ├── CSRMLW.Rproj ├── LICENSE ├── README.md ├── White paper_v1.docx ├── cmh ├── Code │ ├── R │ │ ├── 01_3HA.R │ │ ├── 02_MHOR.R │ │ ├── 03.MH_base.R │ │ └── 04_Bug.R │ └── SAS │ │ ├── CMHschemeaSAS.sas │ │ └── schema.sas ├── Data │ └── R │ │ └── adcibc_filtered.Rdata ├── Docu │ ├── cmh_docu.Rmd │ ├── cmh_docu.html │ ├── final_report │ │ ├── cmh_final.Rmd │ │ ├── cmh_final.html │ │ ├── img.png │ │ ├── takeaways.Rmd │ │ ├── takeaways.html │ │ ├── vcdExtra_issue.Rmd │ │ └── vcdExtra_issue.html │ └── interim_update │ │ ├── cmhsummary.csv │ │ ├── cmhsummary.xlsx │ │ ├── table1.R │ │ ├── table1a.RDS │ │ ├── table1b.RDS │ │ ├── table2.RDS │ │ └── table3.RDS ├── Other │ ├── AZT │ │ ├── R │ │ │ ├── azt_results.Rdata │ │ │ └── azt_script.R │ │ └── SAS │ │ │ ├── result_part1.sas7bdat │ │ │ ├── result_part2.sas7bdat │ │ │ └── script_azt.sas │ └── Migraine │ │ └── R │ │ ├── mig_results.Rdata │ │ └── mig_script.R ├── Results │ ├── R │ │ ├── r_3ha.Rdata │ │ ├── r_base.Rdata │ │ └── r_mhor.Rdata │ └── SAS │ │ ├── result_part1.sas7bdat │ │ └── result_part2.sas7bdat ├── cmh_demo.Rmd └── cmh_demo.md ├── linear_models ├── Example 50.1 RCB with Means Comparisons │ ├── E 50-1.R │ ├── Example 50_1 Randomized Complete Blocks with Means Comparisons and Contrasts.sas │ ├── Results 50_1 RCB.docx │ ├── contrasts.Rmd │ ├── contrasts.html │ ├── modelanova.sas7bdat │ ├── overallanova.sas7bdat │ ├── parameterestimates.sas7bdat │ └── plants.sas7bdat ├── Example 50.2 Regression with Mileage Data │ ├── Example 50.2 Regression with Mileage Data.rmd │ ├── Example 50.2 Regression with Mileage Data.sas │ ├── Example-50.2-Regression-with-Mileage-Data.html │ ├── Results 50.2 Regression with Mileage Data.docx │ ├── fitstatistics.sas7bdat │ ├── mileage.sas7bdat │ ├── overallanova.sas7bdat │ ├── parameterestimates.sas7bdat │ └── predictedvalues.sas7bdat ├── Example 50.3 Unbalanced ANOVA for Two-Way Design with Interaction │ ├── E 50-3.Rmd │ └── E50-3.html ├── Example 50.4 Analysis of Covariance │ └── E 50-4.Rmd ├── _Progress Status │ └── Testing Status.xlsx ├── _Read Me │ ├── Approach and Process.docx │ └── Team Contact Info.docx └── _Results │ ├── Issue tracker.xlsx │ └── Results Summary.docx ├── mixed_models ├── MMRM_SAS_versus_R.R ├── MMRM_SAS_versus_R.Rmd ├── MMRM_SAS_versus_R.html ├── R_code │ ├── 00_main.R │ ├── 01_data_prep.R │ ├── 02_gls_spec.R │ ├── 03_gls_run.R │ ├── 04_lmer_run.R │ ├── 05_r_sas_prep.R │ ├── 06_r_sas_plot_run.R │ └── 99_utility_functions.R ├── R_output │ └── 12JUL2021 │ │ ├── MMRM_SAS_versus_R.html │ │ ├── emmeans.csv │ │ └── pair_diff.csv ├── compare_sas_r_unstructuredcovariance.sas ├── gls_in_R_v1-0.R ├── mmrm_test_norepeated_norandom.sas ├── mmrm_test_random.sas ├── mmrm_test_random_repeated.sas ├── mmrm_test_repeated.sas └── plots.rds └── survival ├── parametric survivial model in r.docx ├── survival.Rmd ├── survival.html └── twoRsurvialandplotpackages.rtf /.gitignore: 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