├── .DS_Store ├── README.md ├── data ├── __pycache__ │ ├── download_datasets.cpython-37.pyc │ ├── pf_dataset.cpython-37.pyc │ ├── synth_dataset.cpython-37.pyc │ └── test_dataset.cpython-37.pyc ├── synth_dataset.py └── test_dataset.py ├── geotnf ├── __pycache__ │ ├── point_tnf.cpython-37(1).pyc │ ├── point_tnf.cpython-37.pyc │ ├── transformation.cpython-37(1).pyc │ ├── transformation.cpython-37.pyc │ └── transformation_high_res.cpython-37.pyc ├── point_tnf.py ├── transformation.py └── transformation_high_res.py ├── image ├── __pycache__ │ ├── normalization.cpython-37(1).pyc │ └── normalization.cpython-37.pyc └── normalization.py ├── jsonData ├── TCIA_FUSION.json └── reg_aaa0069.json ├── model ├── ProsRegNet_model.py ├── __pycache__ │ ├── ProsRegNet_model.cpython-37.pyc │ ├── cnn_geometric_model.cpython-37(1).pyc │ ├── cnn_geometric_model.cpython-37.pyc │ ├── loss.cpython-37(1).pyc │ └── loss.cpython-37.pyc └── loss.py ├── parse_registration_json.py ├── parse_study_dict.py ├── pictures └── pipeline.png ├── preprocess.py ├── register_images.py ├── registration_pipeline.ipynb ├── train.py ├── training_data ├── .DS_Store ├── affine │ ├── test.csv │ └── train.csv └── tps │ ├── test.csv │ └── train.csv └── util ├── __pycache__ ├── torch_util.cpython-37.pyc └── train_test_fn.cpython-37.pyc ├── torch_util.py └── train_test_fn.py /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/.DS_Store -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/README.md -------------------------------------------------------------------------------- /data/__pycache__/download_datasets.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/data/__pycache__/download_datasets.cpython-37.pyc -------------------------------------------------------------------------------- /data/__pycache__/pf_dataset.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/data/__pycache__/pf_dataset.cpython-37.pyc -------------------------------------------------------------------------------- /data/__pycache__/synth_dataset.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/data/__pycache__/synth_dataset.cpython-37.pyc -------------------------------------------------------------------------------- /data/__pycache__/test_dataset.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/data/__pycache__/test_dataset.cpython-37.pyc -------------------------------------------------------------------------------- /data/synth_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/data/synth_dataset.py -------------------------------------------------------------------------------- /data/test_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/data/test_dataset.py -------------------------------------------------------------------------------- /geotnf/__pycache__/point_tnf.cpython-37(1).pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/geotnf/__pycache__/point_tnf.cpython-37(1).pyc -------------------------------------------------------------------------------- /geotnf/__pycache__/point_tnf.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/geotnf/__pycache__/point_tnf.cpython-37.pyc -------------------------------------------------------------------------------- /geotnf/__pycache__/transformation.cpython-37(1).pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/geotnf/__pycache__/transformation.cpython-37(1).pyc -------------------------------------------------------------------------------- /geotnf/__pycache__/transformation.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/geotnf/__pycache__/transformation.cpython-37.pyc -------------------------------------------------------------------------------- /geotnf/__pycache__/transformation_high_res.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/geotnf/__pycache__/transformation_high_res.cpython-37.pyc -------------------------------------------------------------------------------- /geotnf/point_tnf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/geotnf/point_tnf.py -------------------------------------------------------------------------------- /geotnf/transformation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/geotnf/transformation.py -------------------------------------------------------------------------------- /geotnf/transformation_high_res.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/geotnf/transformation_high_res.py -------------------------------------------------------------------------------- /image/__pycache__/normalization.cpython-37(1).pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/image/__pycache__/normalization.cpython-37(1).pyc -------------------------------------------------------------------------------- /image/__pycache__/normalization.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/image/__pycache__/normalization.cpython-37.pyc -------------------------------------------------------------------------------- /image/normalization.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/image/normalization.py -------------------------------------------------------------------------------- /jsonData/TCIA_FUSION.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/jsonData/TCIA_FUSION.json -------------------------------------------------------------------------------- /jsonData/reg_aaa0069.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/jsonData/reg_aaa0069.json -------------------------------------------------------------------------------- /model/ProsRegNet_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/model/ProsRegNet_model.py -------------------------------------------------------------------------------- /model/__pycache__/ProsRegNet_model.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/model/__pycache__/ProsRegNet_model.cpython-37.pyc -------------------------------------------------------------------------------- /model/__pycache__/cnn_geometric_model.cpython-37(1).pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/model/__pycache__/cnn_geometric_model.cpython-37(1).pyc -------------------------------------------------------------------------------- /model/__pycache__/cnn_geometric_model.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/model/__pycache__/cnn_geometric_model.cpython-37.pyc -------------------------------------------------------------------------------- /model/__pycache__/loss.cpython-37(1).pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/model/__pycache__/loss.cpython-37(1).pyc -------------------------------------------------------------------------------- /model/__pycache__/loss.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/model/__pycache__/loss.cpython-37.pyc -------------------------------------------------------------------------------- /model/loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/model/loss.py -------------------------------------------------------------------------------- /parse_registration_json.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/parse_registration_json.py -------------------------------------------------------------------------------- /parse_study_dict.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/parse_study_dict.py -------------------------------------------------------------------------------- /pictures/pipeline.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/pictures/pipeline.png -------------------------------------------------------------------------------- /preprocess.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/preprocess.py -------------------------------------------------------------------------------- /register_images.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/register_images.py -------------------------------------------------------------------------------- /registration_pipeline.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/registration_pipeline.ipynb -------------------------------------------------------------------------------- /train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/train.py -------------------------------------------------------------------------------- /training_data/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/training_data/.DS_Store -------------------------------------------------------------------------------- /training_data/affine/test.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/training_data/affine/test.csv -------------------------------------------------------------------------------- /training_data/affine/train.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/training_data/affine/train.csv -------------------------------------------------------------------------------- /training_data/tps/test.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/training_data/tps/test.csv -------------------------------------------------------------------------------- /training_data/tps/train.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/training_data/tps/train.csv -------------------------------------------------------------------------------- /util/__pycache__/torch_util.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/util/__pycache__/torch_util.cpython-37.pyc -------------------------------------------------------------------------------- /util/__pycache__/train_test_fn.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/util/__pycache__/train_test_fn.cpython-37.pyc -------------------------------------------------------------------------------- /util/torch_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/util/torch_util.py -------------------------------------------------------------------------------- /util/train_test_fn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pimed/ProsRegNet/HEAD/util/train_test_fn.py --------------------------------------------------------------------------------