├── .github └── workflows │ └── ci.yml ├── .gitignore ├── .readthedocs.yaml ├── .vscode └── settings.json ├── CODEOWNERS ├── LICENSE ├── README.md ├── assets ├── HEATfullDivTransparent.png ├── HF_T_EQ.gif ├── flame.png ├── gui1.png ├── gui2.png ├── gyroHF.png ├── gyroTrace.png ├── helixVisual2.png ├── limiter.gif └── sideBySide.gif ├── docker ├── Dockerfile ├── buildDocker_LEGACY ├── buildM3DC1 ├── buildMAFOT ├── docker-compose.yml ├── make.inc.ubuntu_x86 ├── requirements.txt ├── runDockerCompose ├── runDockerComposeDetached └── runDockerComposeGUI ├── docs ├── Makefile ├── make.bat ├── requirements.txt └── source │ ├── GUItutorial.rst │ ├── TUItutorial.rst │ ├── appimage.rst │ ├── conf.py │ ├── contact.rst │ ├── docker.rst │ ├── index.rst │ ├── inputFile.rst │ ├── install.rst │ └── license.rst ├── source ├── CADClass.py ├── GUIscripts │ ├── CADstuff.py │ ├── PythonCSVReader.py │ ├── __pycache__ │ │ ├── plotly2DEQ.cpython-310.pyc │ │ └── plotlyGUIplots.cpython-310.pyc │ ├── csv2vtk.py │ ├── csv2vtkBASH.sh │ ├── meshOpsClass.py │ ├── plot2DEQ.py │ ├── plotly2DEQ.py │ ├── plotlyGUIplots.py │ ├── postProcessFunctions.py │ ├── tester.py │ ├── vtkAlgorithms.py │ └── vtkOpsClass.py ├── MHDClass.py ├── assets │ ├── baseStyles.css_OLD │ ├── bg1.jpg │ ├── customHEATstyles.css_OLD │ ├── customHEATstyles2.css │ └── flame.ico ├── dashGUI.py ├── elmer │ ├── HFReaderModule.f90 │ ├── HFReaderModuleOLD.f90 │ ├── ReXModule.f90 │ └── caseTempStressReX.sif ├── elmerClass.py ├── engineClass.py ├── filamentClass.py ├── gfiles.py ├── gyroClass.py ├── heatFoam │ ├── Make │ │ ├── files │ │ └── options │ ├── build_heatFoam │ ├── createFields.H │ ├── heatFoam.C │ ├── interpolateProperties.H │ ├── readHF.H │ └── write.H ├── heatfluxClass.py ├── helperMacros │ ├── bfield_PV_macro.py │ ├── fieldTrace_macro.py │ ├── freecadMacros │ ├── heatFlux_PV_macro.py │ ├── paraview_loadMultipleFoamFiles.py │ └── shadowMask_PV_macro.py ├── inputs │ └── default_input.csv ├── ioClass.py ├── launchHEAT.py ├── logConfig.py ├── openFOAMclass.py ├── openFoamTemplates │ ├── envFiles │ │ ├── bashrc │ │ └── setup │ ├── heatFoamTemplate │ │ ├── 0 │ │ │ ├── HF │ │ │ └── T │ │ ├── Allclean │ │ ├── Allrun │ │ ├── constant │ │ │ ├── DT │ │ │ ├── g │ │ │ ├── radiationProperties │ │ │ ├── thermCond │ │ │ ├── thermophysicalProperties_constValues │ │ │ ├── transportProperties │ │ │ ├── triSurface │ │ │ │ └── .gitkeep │ │ │ └── turbulenceProperties │ │ └── system │ │ │ ├── fvOptions │ │ │ ├── fvSchemes │ │ │ ├── fvSolution │ │ │ └── probes.cfg │ ├── materials │ │ ├── ATJ │ │ │ ├── Cp │ │ │ ├── Cp_ATJ_Graphite_kelvin │ │ │ ├── DT │ │ │ ├── DT_ATJ_Graphite_kelvin │ │ │ ├── thermCond │ │ │ └── thermCond_ATJ_Graphite_kelvin │ │ ├── MOLY │ │ │ ├── DT │ │ │ ├── DT_molybdenum │ │ │ ├── thermCond │ │ │ └── thermCond_molybdenum │ │ ├── SGLR6510 │ │ │ ├── Cp │ │ │ ├── Cp_SGLR6510_NSTXU_centigrade │ │ │ ├── Cp_SGLR6510_NSTXU_kelvin │ │ │ ├── DT │ │ │ ├── DT_SGLR6510_NSTXU_centigrade │ │ │ ├── DT_SGLR6510_NSTXU_kelvin │ │ │ ├── thermCond │ │ │ ├── thermCond_SGLR6510_NSTXU_centigrade │ │ │ └── thermCond_SGLR6510_NSTXU_kelvin │ │ ├── TUNG │ │ │ ├── Cp │ │ │ ├── Cp_tungsten_Jun │ │ │ ├── DT │ │ │ ├── DT_tungsten_Jun │ │ │ ├── thermCond │ │ │ └── thermCond_tungsten_Jun │ │ ├── TUNG_SPARC │ │ │ ├── Cp │ │ │ ├── DT │ │ │ └── thermCond │ │ ├── USER │ │ │ ├── Cp │ │ │ ├── DT │ │ │ └── thermCond │ │ ├── W7X_graphite │ │ │ ├── DT_fromW7X │ │ │ └── thermCond_fromW7X │ │ └── WHA │ │ │ ├── Cp │ │ │ ├── DT │ │ │ └── thermCond │ └── templateDicts │ │ ├── blockMeshDict.template │ │ ├── controlDict.template │ │ ├── createPatchDict.template │ │ ├── decomposeParDict.template │ │ ├── meshAndPatch.template │ │ ├── meshQualityDict.template │ │ ├── probes.template │ │ ├── sampleDict.template │ │ ├── snappyHexMeshDict.template │ │ ├── surfaceFeatureExtractDict.template │ │ └── topoSetDict.template ├── pfcClass.py ├── plasma3DClass.py ├── radClass.py ├── runTerminalMode ├── runTerminalModeTestBYOM ├── runTerminalModeTestFilament ├── runTerminalModeTestGyro ├── runTerminalModeTestOptical ├── runTerminalModeTestOpticalElmer ├── runTerminalModeTestRE ├── runTerminalModeTestRad ├── runTerminalModeTestrzq ├── runawayClass.py ├── terminalUI.py └── toolsClass.py └── tests └── integrationTests ├── D3DTestCase ├── batchFile.dat └── d3d │ ├── D3D_input.csv │ ├── PFCinput.csv │ ├── d3d_sector.step │ ├── g154859.04300 │ ├── m3dc1sup.in │ └── mesh21a_kap6_amu6_newer_n=3 │ ├── C1.h5 │ ├── replaceMeWith_equilibrium.h5 │ └── replaceMeWith_time_001.h5 ├── ciTest.py ├── nstxuTestCase ├── batchFile.dat ├── batchFile_RE.dat ├── batchFile_filament.dat ├── batchFile_gyro.dat ├── batchFile_optical.dat ├── batchFile_optical_BYOM.dat ├── batchFile_optical_elmer.dat ├── batchFile_rad.dat ├── batchFile_rzq.dat └── nstx │ ├── NSTXU_input.csv │ ├── NSTXU_input_rzq.csv │ ├── PFCs.csv │ ├── PFCs_BYOM.csv │ ├── RZpower.csv │ ├── Runaways.csv │ ├── SOLID842___standard.stl │ ├── SOLID843___5.000000mm.stl │ ├── 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