├── .clang-format ├── .flake8 ├── .gitignore ├── .vscode ├── c_cpp_properties.json ├── settings.json └── tasks.json ├── README-for-ADIOS2.txt ├── README.txt ├── Tutorial ├── brusselator │ ├── .gitignore │ ├── README │ └── src │ │ ├── Makefile │ │ ├── Makefile.inc │ │ ├── README │ │ ├── adios2.xml │ │ ├── analysis │ │ ├── Makefile │ │ ├── bru_plot.py │ │ ├── bru_plot_scott.py │ │ ├── decomp.py │ │ ├── feature_detection.py │ │ ├── norm_calc.cpp │ │ └── norm_calc2.cpp │ │ └── simulation │ │ ├── 2decomp_fft │ │ ├── Makefile │ │ ├── README │ │ ├── doc │ │ │ └── DOC_2DECOMP_FFT.html │ │ ├── examples │ │ │ ├── Makefile │ │ │ ├── README.examples │ │ │ ├── fft_test_c2c │ │ │ │ ├── Makefile │ │ │ │ ├── README │ │ │ │ ├── c06fxfe.r │ │ │ │ └── fft_test_c2c.f90 │ │ │ ├── fft_test_r2c │ │ │ │ ├── Makefile │ │ │ │ ├── README │ │ │ │ └── fft_test_r2c.f90 │ │ │ ├── ga_test │ │ │ │ ├── Makefile │ │ │ │ ├── README │ │ │ │ └── ga_test.f90 │ │ │ ├── halo_test │ │ │ │ ├── Makefile │ │ │ │ ├── README │ │ │ │ └── halo_test.f90 │ │ │ ├── io_test │ │ │ │ ├── Makefile │ │ │ │ ├── README │ │ │ │ ├── io_bench.f90 │ │ │ │ ├── io_plane_test.f90 │ │ │ │ ├── io_read.f90 │ │ │ │ ├── io_test.f90 │ │ │ │ ├── io_var_test.f90 │ │ │ │ └── run_test.sh │ │ │ ├── non_blocking │ │ │ │ ├── Makefile │ │ │ │ ├── README │ │ │ │ ├── blocking.f90 │ │ │ │ └── non_blocking.f90 │ │ │ ├── p3dfft │ │ │ │ ├── Makefile │ │ │ │ ├── README │ │ │ │ └── p3dfft.f90 │ │ │ ├── tecplot_view │ │ │ │ ├── 2decomp_decomp.png │ │ │ │ ├── Makefile │ │ │ │ ├── README │ │ │ │ └── tecplot_view.f90 │ │ │ ├── test2d │ │ │ │ ├── Makefile │ │ │ │ ├── README │ │ │ │ └── test2d.f90 │ │ │ └── timing │ │ │ │ ├── Makefile │ │ │ │ ├── README │ │ │ │ └── timing.f90 │ │ └── src │ │ │ ├── Makefile │ │ │ ├── Makefile.inc.BlueGene │ │ │ ├── Makefile.inc.Cray_XE │ │ │ ├── Makefile.inc.Fujitsu_SPARC64_VIIIfx │ │ │ ├── Makefile.inc.x86 │ │ │ ├── acml_plan.f90 │ │ │ ├── alloc.f90 │ │ │ ├── alloc_shm.c │ │ │ ├── decomp_2d.f90 │ │ │ ├── factor.f90 │ │ │ ├── fft_acml.f90 │ │ │ ├── fft_common.f90 │ │ │ ├── fft_common_3d.f90 │ │ │ ├── fft_essl.f90 │ │ │ ├── fft_ffte.f90 │ │ │ ├── fft_fftpack5.f90 │ │ │ ├── fft_fftw3.f90 │ │ │ ├── fft_fftw3_f03.f90 │ │ │ ├── fft_generic.f90 │ │ │ ├── fft_mkl.f90 │ │ │ ├── glassman.f90 │ │ │ ├── halo.f90 │ │ │ ├── halo_common.f90 │ │ │ ├── io.f90 │ │ │ ├── io_read_one.f90 │ │ │ ├── io_read_var.f90 │ │ │ ├── io_write_every.f90 │ │ │ ├── io_write_one.f90 │ │ │ ├── io_write_plane.f90 │ │ │ ├── io_write_var.f90 │ │ │ ├── transpose_x_to_y.f90 │ │ │ ├── transpose_y_to_x.f90 │ │ │ ├── transpose_y_to_z.f90 │ │ │ └── transpose_z_to_y.f90 │ │ ├── Makefile │ │ ├── README │ │ ├── brusselator.f90 │ │ ├── getgrid.f90 │ │ ├── initialdata.f90 │ │ ├── linear.f90 │ │ ├── nonlinear1.f90 │ │ ├── nonlinear2.f90 │ │ └── savedata.f90 ├── gray-scott │ ├── .clang-format │ ├── .gitignore │ ├── CMakeLists.txt │ ├── README.md │ ├── adios2.xml │ ├── analysis │ │ ├── curvature.cpp │ │ ├── find_blobs.cpp │ │ ├── isosurface.cpp │ │ └── pdf_calc.cpp │ ├── cleanup.sh │ ├── common │ │ └── timer.hpp │ ├── img │ │ ├── example1.jpg │ │ ├── example2.jpg │ │ ├── example3.jpg │ │ ├── example4.jpg │ │ └── example5.jpg │ ├── plot │ │ ├── decomp.py │ │ ├── gsplot.py │ │ ├── pdfplot.py │ │ └── render_isosurface.cpp │ ├── simulation │ │ ├── LICENSE │ │ ├── gray-scott.cpp │ │ ├── gray-scott.h │ │ ├── json.hpp │ │ ├── main.cpp │ │ ├── settings-files.json │ │ ├── settings-staging.json │ │ ├── settings.cpp │ │ ├── settings.h │ │ ├── writer.cpp │ │ └── writer.h │ ├── visit-bp4.session │ ├── visit-bp4.session.gui │ ├── visit-sst.session │ └── visit-sst.session.gui ├── gs-adios2 │ ├── .clang-format │ ├── .gitignore │ ├── .vscode │ │ ├── c_cpp_properties.json │ │ └── settings.json │ ├── CMakeLists.txt │ ├── README.md │ ├── adios2.xml │ ├── analysis │ │ └── pdf-calc.cpp │ ├── cleanup.sh │ ├── img │ │ ├── example1.jpg │ │ ├── example2.jpg │ │ ├── example3.jpg │ │ ├── example4.jpg │ │ └── example5.jpg │ ├── plot │ │ ├── decomp.py │ │ ├── gsplot.py │ │ ├── gsplot_rra.py │ │ ├── gsread_mpi.py │ │ └── pdfplot.py │ └── simulation │ │ ├── LICENSE │ │ ├── gray-scott.cpp │ │ ├── gray-scott.h │ │ ├── json.hpp │ │ ├── main.cpp │ │ ├── settings-files.json │ │ ├── settings-staging.json │ │ ├── settings.cpp │ │ ├── settings.h │ │ ├── writer.cpp │ │ └── writer.h ├── gs-mpiio │ ├── .clang-format │ ├── .gitignore │ ├── .vscode │ │ ├── c_cpp_properties.json │ │ └── settings.json │ ├── CMakeLists.txt │ ├── README.md │ ├── adios2.xml │ ├── analysis │ │ └── pdf-calc.cpp │ ├── cleanup.sh │ ├── img │ │ ├── example1.jpg │ │ ├── example2.jpg │ │ ├── example3.jpg │ │ ├── example4.jpg │ │ └── example5.jpg │ ├── plot │ │ ├── gsplot.py │ │ └── gsread_mpi.py │ └── simulation │ │ ├── LICENSE │ │ ├── gray-scott.cpp │ │ ├── gray-scott.h │ │ ├── json.hpp │ │ ├── main.cpp │ │ ├── settings-files.json │ │ ├── settings.cpp │ │ ├── settings.h │ │ ├── writer.cpp │ │ └── writer.h ├── gs-noio │ ├── .clang-format │ ├── .gitignore │ ├── .vscode │ │ ├── c_cpp_properties.json │ │ └── settings.json │ ├── CMakeLists.txt │ ├── HOWTO-adios.md │ ├── README.md │ ├── adios2.xml │ ├── analysis │ │ └── pdf-calc.cpp │ ├── cleanup.sh │ ├── img │ │ ├── example1.jpg │ │ ├── example2.jpg │ │ ├── example3.jpg │ │ ├── example4.jpg │ │ └── example5.jpg │ ├── plot │ │ └── gsread_mpi.py │ └── simulation │ │ ├── LICENSE │ │ ├── gray-scott.cpp │ │ ├── gray-scott.h │ │ ├── json.hpp │ │ ├── main.cpp │ │ ├── settings-files.json │ │ ├── settings.cpp │ │ ├── settings.h │ │ ├── writer.cpp │ │ └── writer.h └── heat2d │ ├── cpp │ ├── Makefile │ ├── ReadMe.md │ ├── adios2.xml │ ├── analysis │ │ ├── AnalysisSettings.cpp │ │ ├── AnalysisSettings.h │ │ └── heatAnalysis.cpp │ ├── make.settings │ ├── runtimecfg │ │ ├── adios1.xml │ │ ├── bpfile.xml │ │ ├── dataman.xml │ │ ├── hdf5.xml │ │ ├── insitumpi.xml │ │ └── sst.xml │ ├── simulation │ │ ├── HeatTransfer.cpp │ │ ├── HeatTransfer.h │ │ ├── IO.h │ │ ├── IO_adios2.cpp │ │ ├── Settings.cpp │ │ ├── Settings.h │ │ └── 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