├── README.md ├── data-structures ├── README.md └── teaching-pandas.ipynb ├── databases ├── couchdb │ ├── README.md │ ├── img │ │ └── couch.png │ ├── sit-on-couch.py │ └── thePoldracklabCouch.py └── hcp │ ├── copy_data.py │ ├── extract_petersen_roi_means.py │ ├── extract_timeseries.py │ ├── make_contrast_paths.py │ ├── make_z_maps.py │ ├── print_number_subjects.py │ ├── run_extract_petersen_roi_means.py │ ├── run_extract_timeseries.py │ └── run_randomise.py ├── networks └── hcpconn_network │ ├── README.md │ ├── do_network_analysis.Rmd │ ├── parcel_matrix.csv │ └── parcels.csv └── visualization ├── README.md ├── make_3d_model ├── README.md ├── run_srf2obj └── srf2obj ├── make_4d_movie ├── brain.GIF ├── brain_movie.py ├── make_brain_movie.sh └── priors_in_BRAINMETA.nii.gz ├── make_atlas_svg └── make_atlas_svg.ipynb ├── make_roi_images ├── README.md ├── make_roi_images.ipynb ├── parcels.L.bin.001.nii.gz ├── roi096.png ├── roi_z_lookup.txt └── sub013_mpr1_on_TRIO_Y_NDC_222_brain.nii.gz ├── 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