├── .DS_Store ├── .github └── workflows │ ├── Build.yml │ └── Build_on_pull_request.yml ├── .gitignore ├── .readthedocs.yaml ├── CHANGELOG.md ├── LICENSE ├── README.md ├── dashboards ├── run-shiny-study-viewer.sh └── run-shiny-wavelet-explorer.sh ├── data ├── .DS_Store ├── EEGLAB │ ├── eeglab_chan32.locs │ ├── eeglab_data.fdt │ ├── eeglab_data.set │ ├── eeglab_data_epochs_ica.fdt │ └── eeglab_data_epochs_ica.set ├── NIRS │ ├── DCARE_02_sub1.snirf │ ├── DCARE_02_sub2.snirf │ ├── MCARE_01_probeInfo.mat │ ├── downloads │ │ └── .keep │ ├── lionirs │ │ ├── Standard_Channels.txt │ │ └── channel_grouping_7ROI.mat │ └── slow_breathing.snirf ├── XDF │ ├── dyad-example-noise.xdf │ └── dyad-example-with-markers.xdf ├── participant1-epo.fif ├── participant2-epo.fif ├── results │ └── .keep └── sub-110_session-1_pre.fif ├── docs ├── API │ ├── analyses.md │ ├── preprocessing.md │ ├── statistics.md │ ├── useful_tools.md │ └── visualisation.md ├── custom.css ├── index.md └── requirements.txt ├── hypyp ├── __init__.py ├── analyses.py ├── data │ └── Basehead.obj ├── ext │ ├── __init__.py │ └── mpl3d │ │ ├── __init__.py │ │ ├── camera.py │ │ ├── glm.py │ │ ├── lighting.py │ │ ├── mesh.py │ │ └── trackball.py ├── fnirs │ ├── __init__.py │ ├── channel_roi.py │ ├── data_browser.py │ ├── dyad.py │ ├── legacy │ │ └── fnirs_tools.py │ ├── preprocessor │ │ ├── base_preprocessor.py │ │ ├── base_step.py │ │ └── implementations │ │ │ ├── cedalion_preprocessor.py │ │ │ ├── mne_preprocessor_as_is.py │ │ │ ├── mne_preprocessor_raw_to_haemo.py │ │ │ └── mne_step.py │ ├── recording.py │ └── study.py ├── io.py ├── mvarica.py ├── plots.py ├── prep.py ├── profiling.py ├── shiny │ ├── study_viewer.py │ └── wavelet_explorer.py ├── signal.py ├── stats.py ├── utils.py ├── viz.py ├── wavelet │ ├── __init__.py │ ├── base_wavelet.py │ ├── coherence_data_frame.py │ ├── cwt.py │ ├── implementations │ │ ├── matlab_wavelet.py │ │ ├── pycwt_wavelet.py │ │ └── pywavelets_wavelet.py │ ├── pair_signals.py │ └── wtc.py └── xdf │ ├── __init__.py │ ├── xdf_import.py │ └── xdf_stream.py ├── mkdocs.yml ├── poetry.lock ├── pyproject.toml ├── tests ├── conftest.py ├── run-test-watch.sh ├── test_coherence_data_frame.py ├── test_fnirs.py ├── test_fnirs_cedalion.py ├── test_pdc.py ├── test_prep.py ├── test_signal.py ├── test_stats.py ├── test_utils.py ├── test_wavelet.py ├── test_wavelet_implementations.py └── test_xdf.py ├── tutorial ├── .DS_Store ├── fnirs_getting_started.ipynb ├── fnirs_recording_inspection.ipynb ├── getting_started.ipynb ├── import_from_eeglab.ipynb ├── import_from_xdf.ipynb ├── manage_eeglab_montage.ipynb ├── run-notebooks.sh ├── simulations.ipynb ├── wavelet_exploration.ipynb ├── wavelet_lag_exploration.ipynb └── wavelet_wtc_in_depth.ipynb └── update_docs_requirements.sh /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ppsp-team/HyPyP/HEAD/.DS_Store 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