├── README.md ├── finalized gut analysis (part 1).ipynb ├── finalized gut analysis (part 2).ipynb ├── finalized gut analysis (part 3).ipynb ├── finalized lcmv analysis (part 1).ipynb ├── finalized lcmv analysis (part 2: wt med ln).ipynb ├── finalized lcmv analysis (part 3: wt tissues).ipynb ├── helper_functions.py ├── qvalue_script.R └── supplementary_tables ├── CD4_annotation_LFCs.xls ├── CD4_correlations.xls ├── ct_annotation_degs.xls ├── leiden_cluster_degs.xls ├── updated_CD4_annotation_LFCs.xls ├── updated_ct_annotation_degs.xls └── updated_leiden_cluster_degs.xls /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pritykinlab/ulipstic-analysis/HEAD/README.md -------------------------------------------------------------------------------- /finalized gut analysis (part 1).ipynb: -------------------------------------------------------------------------------- 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