├── .github └── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md ├── .gitignore ├── .travis.yml ├── CODE_OF_CONDUCT.md ├── Dockerfile ├── contributing.md ├── docker-compose.yml ├── hooks └── build ├── license.txt ├── pom.xml ├── readme.md ├── webprotege-cli ├── pom.xml └── src │ ├── main │ ├── java │ │ └── edu │ │ │ └── stanford │ │ │ └── bmir │ │ │ └── protege │ │ │ └── web │ │ │ └── server │ │ │ └── cmdline │ │ │ ├── Cmd.java │ │ │ ├── CreateAdminAccountCmd.java │ │ │ ├── GenerateApiKeyCmd.java │ │ │ ├── RebuildPermissions.java │ │ │ ├── RebuildPermissionsCmd.java │ │ │ ├── SetPermissions.java │ │ │ ├── SetPermissionsCmd.java │ │ │ ├── SetupTools.java │ │ │ └── WebProtegeCli.java │ ├── resources │ │ └── logback.xml │ └── scripts │ │ ├── wp-export.sh │ │ └── wp-import.sh │ └── test │ └── java │ └── edu │ └── stanford │ └── bmir │ └── protege │ └── web │ └── server │ └── cmdline │ └── WebProtegeCli_TestCase.java ├── webprotege-client ├── pom.xml └── src │ ├── main │ ├── java │ │ └── edu │ │ │ └── stanford │ │ │ └── bmir │ │ │ └── protege │ │ │ └── web │ │ │ ├── client │ │ │ ├── FormsMessages.java │ │ │ ├── HasReadOnly.java │ │ │ ├── JSON.java │ │ │ ├── Messages.java │ │ │ ├── VersionInfo.java │ │ │ ├── WebProtege.java │ │ │ ├── about │ │ │ │ ├── AboutBox.java │ │ │ │ ├── AboutBoxContent.java │ │ │ │ └── AboutBoxContent.ui.xml │ │ │ ├── action │ │ │ │ ├── AbstractUiAction.java │ │ │ │ ├── CreateHandler.java │ │ │ │ ├── DeleteHandler.java │ │ │ │ ├── HasCreateHandler.java │ │ │ │ ├── HasDeleteHandler.java │ │ │ │ ├── NullCreateHandler.java │ │ │ │ ├── NullDeleteHandler.java │ │ │ │ └── UIAction.java │ │ │ ├── anchor │ │ │ │ ├── AnchorClickedEvent.java │ │ │ │ ├── AnchorClickedHandler.java │ │ │ │ ├── HasAnchor.java │ │ │ │ └── HasAnchorClickedHandlers.java │ │ │ ├── app │ │ │ │ ├── ApplicationInitManager.java │ │ │ │ ├── ApplicationPresenter.java │ │ │ │ ├── ApplicationSettingsPresenter.java │ │ │ │ ├── ApplicationUrlView.java │ │ │ │ ├── ApplicationUrlViewImpl.java │ │ │ │ ├── ApplicationUrlViewImpl.ui.xml │ │ │ │ ├── ApplicationView.java │ │ │ │ ├── ApplicationViewImpl.java │ │ │ │ ├── ApplicationViewImpl.ui.xml │ │ │ │ ├── ClientObjectDecoder.java │ │ │ │ ├── ClientObjectReader.java │ │ │ │ ├── EmailNotificationSettingsView.java │ │ │ │ ├── EmailNotificationSettingsViewImpl.java │ │ │ │ ├── EmailNotificationSettingsViewImpl.ui.xml │ │ │ │ ├── ForbiddenView.java │ │ │ │ ├── ForbiddenViewImpl.java │ │ │ │ ├── ForbiddenViewImpl.ui.xml │ │ │ │ ├── GlobalPermissionSettingsView.java │ │ │ │ ├── GlobalPermissionSettingsViewImpl.java │ │ │ │ ├── GlobalPermissionSettingsViewImpl.ui.xml │ │ │ │ ├── HasForbiddenView.java │ │ │ │ ├── NothingSelectedView.java │ │ │ │ ├── NothingSelectedViewImpl.java │ │ │ │ ├── NothingSelectedViewImpl.ui.xml │ │ │ │ ├── PermissionScreener.java │ │ │ │ ├── Presenter.java │ │ │ │ ├── ReadLoggedInUserInitializationTask.java │ │ │ │ ├── SchemeValue.java │ │ │ │ ├── SystemDetailsView.java │ │ │ │ ├── SystemDetailsViewImpl.java │ │ │ │ ├── SystemDetailsViewImpl.ui.xml │ │ │ │ ├── UserInSessionDecoder.java │ │ │ │ └── WebProtegeInitializer.java │ │ │ ├── auth │ │ │ │ ├── AuthenticatedActionExecutor.java │ │ │ │ └── AuthenticatedDispatchServiceCallback.java │ │ │ ├── bulkop │ │ │ │ ├── AnnotationSimpleMatchingCriteriaView.java │ │ │ │ ├── AnnotationSimpleMatchingCriteriaViewImpl.java │ │ │ │ ├── AnnotationSimpleMatchingCriteriaViewImpl.ui.xml │ │ │ │ ├── BulkEditOperationPresenter.java │ │ │ │ ├── BulkEditOperationViewContainer.java │ │ │ │ ├── BulkEditOperationViewContainerImpl.java │ │ │ │ ├── BulkEditOperationViewContainerImpl.ui.xml │ │ │ │ ├── BulkEditOperationWorkflow.java │ │ │ │ ├── BulkEditingOperationDialogController.java │ │ │ │ ├── BulkOpMessageFormatter.java │ │ │ │ ├── CommitMessageInputView.java │ │ │ │ ├── CommitMessageInputViewImpl.java │ │ │ │ ├── CommitMessageInputViewImpl.ui.xml │ │ │ │ ├── EditAnnotationsPresenter.java │ │ │ │ ├── EditAnnotationsUiAction.java │ │ │ │ ├── EditAnnotationsView.java │ │ │ │ ├── EditAnnotationsViewImpl.java │ │ │ │ ├── EditAnnotationsViewImpl.ui.xml │ │ │ │ ├── MoveEntitiesToParentPresenter.java │ │ │ │ ├── MoveToParentUiAction.java │ │ │ │ ├── MoveToParentView.java │ │ │ │ ├── MoveToParentViewImpl.java │ │ │ │ ├── MoveToParentViewImpl.ui.xml │ │ │ │ ├── SetAnnotationValuePresenter.java │ │ │ │ ├── SetAnnotationValueUiAction.java │ │ │ │ ├── SetAnnotationValueView.java │ │ │ │ ├── SetAnnotationValueViewImpl.java │ │ │ │ └── SetAnnotationValueViewImpl.ui.xml │ │ │ ├── change │ │ │ │ ├── ChangeDetailsView.java │ │ │ │ ├── ChangeDetailsViewImpl.java │ │ │ │ ├── ChangeDetailsViewImpl.ui.xml │ │ │ │ ├── ChangeListPresenter.java │ │ │ │ ├── ChangeListSeparator.java │ │ │ │ ├── ChangeListSeparator.ui.xml │ │ │ │ ├── ChangeListView.java │ │ │ │ ├── ChangeListViewImpl.java │ │ │ │ ├── ChangeListViewImpl.ui.xml │ │ │ │ ├── DownloadRevisionHandler.java │ │ │ │ ├── EntityChangesPortletPresenter.java │ │ │ │ ├── ProjectHistoryPortletPresenter.java │ │ │ │ ├── RevertRevisionHandler.java │ │ │ │ └── SubjectDisplay.java │ │ │ ├── chgpwd │ │ │ │ ├── ChangePasswordPresenter.java │ │ │ │ ├── ChangePasswordView.java │ │ │ │ ├── ChangePasswordViewImpl.java │ │ │ │ ├── ChangePasswordViewImpl.ui.xml │ │ │ │ ├── ResetPasswordPresenter.java │ │ │ │ ├── ResetPasswordView.java │ │ │ │ ├── ResetPasswordViewImpl.java │ │ │ │ └── ResetPasswordViewImpl.ui.xml │ │ │ ├── collection │ │ │ │ ├── AddCollectionItemPrompt.java │ │ │ │ ├── AddCollectionItemPromptImpl.java │ │ │ │ ├── CollectionItemListPresenter.java │ │ │ │ ├── CollectionItemListView.java │ │ │ │ ├── CollectionItemListViewImpl.java │ │ │ │ ├── CollectionItemListViewImpl.ui.xml │ │ │ │ ├── CollectionItemRenderer.java │ │ │ │ ├── CollectionPresenter.java │ │ │ │ ├── CollectionView.java │ │ │ │ ├── CollectionViewImpl.java │ │ │ │ └── CollectionViewImpl.ui.xml │ │ │ ├── color │ │ │ │ ├── ColorSelectedHandler.java │ │ │ │ ├── ColorSwatchPresenter.java │ │ │ │ ├── ColorSwatchView.java │ │ │ │ ├── ColorSwatchViewImpl.java │ │ │ │ ├── ColorSwatchViewImpl.ui.xml │ │ │ │ ├── ColorSwatchWellView.java │ │ │ │ ├── ColorSwatchWellViewImpl.java │ │ │ │ └── ColorSwatchWellViewImpl.ui.xml │ │ │ ├── crud │ │ │ │ ├── ConditionalIriPrefixPresenter.java │ │ │ │ ├── ConditionalIriPrefixView.java │ │ │ │ ├── ConditionalIriPrefixViewImpl.java │ │ │ │ ├── ConditionalIriPrefixViewImpl.ui.xml │ │ │ │ ├── EntityCrudKitPrefixSettingsPresenter.java │ │ │ │ ├── EntityCrudKitPrefixSettingsView.java │ │ │ │ ├── EntityCrudKitPrefixSettingsViewImpl.java │ │ │ │ ├── EntityCrudKitPrefixSettingsViewImpl.ui.xml │ │ │ │ ├── EntityCrudKitSettingsPresenter.java │ │ │ │ ├── EntityCrudKitSettingsView.java │ │ │ │ ├── EntityCrudKitSettingsViewImpl.java │ │ │ │ ├── EntityCrudKitSettingsViewImpl.ui.xml │ │ │ │ ├── EntityCrudKitSuffixSettingsPresenter.java │ │ │ │ ├── EntityCrudKitSuffixSettingsView.java │ │ │ │ ├── EntityCrudKitSuffixSettingsViewImpl.java │ │ │ │ ├── EntityCrudKitSuffixSettingsViewImpl.ui.xml │ │ │ │ ├── obo │ │ │ │ │ ├── OboIdSuffixSettingsPresenter.java │ │ │ │ │ ├── OboIdSuffixSettingsView.java │ │ │ │ │ ├── OboIdSuffixSettingsViewImpl.java │ │ │ │ │ ├── OboIdSuffixSettingsViewImpl.ui.xml │ │ │ │ │ ├── UserIdRangeEditor.java │ │ │ │ │ ├── UserIdRangeEditorImpl.java │ │ │ │ │ └── UserIdRangeEditorImpl.ui.xml │ │ │ │ ├── supplied │ │ │ │ │ ├── SuppliedNameSuffixSettingsPresenter.java │ │ │ │ │ ├── SuppliedNameSuffixSettingsView.java │ │ │ │ │ ├── SuppliedNameSuffixSettingsViewImpl.java │ │ │ │ │ └── SuppliedNameSuffixSettingsViewImpl.ui.xml │ │ │ │ └── uuid │ │ │ │ │ ├── UuidSuffixSettingViewImpl.java │ │ │ │ │ ├── UuidSuffixSettingViewImpl.ui.xml │ │ │ │ │ ├── UuidSuffixSettingsPresenter.java │ │ │ │ │ └── UuidSuffixSettingsView.java │ │ │ ├── csv │ │ │ │ ├── CSVColumnRelationEditorViewImpl.java │ │ │ │ ├── CSVColumnRelationEditorViewImpl.ui.xml │ │ │ │ ├── CSVColumnRelationView.java │ │ │ │ ├── CSVGridResource.css │ │ │ │ ├── CSVGridResources.java │ │ │ │ ├── CSVGridView.java │ │ │ │ ├── CSVGridViewImpl.java │ │ │ │ ├── CSVGridViewImpl.ui.xml │ │ │ │ ├── CSVImportClientBundle.java │ │ │ │ ├── CSVImportDialogController.java │ │ │ │ ├── CSVImportStyle.css │ │ │ │ ├── CSVImportStyle.java │ │ │ │ ├── CSVImportView.java │ │ │ │ ├── CSVImportViewImpl.java │ │ │ │ └── CSVImportViewImpl.ui.xml │ │ │ ├── d3 │ │ │ │ ├── Event.java │ │ │ │ ├── FilterFunction.java │ │ │ │ ├── Function.java │ │ │ │ ├── Selection.java │ │ │ │ ├── Transform.java │ │ │ │ ├── Zoom.java │ │ │ │ └── d3.java │ │ │ ├── dagre │ │ │ │ └── Dagre.java │ │ │ ├── diff │ │ │ │ ├── DiffClientBundle.java │ │ │ │ ├── DiffLineElementRenderer.java │ │ │ │ ├── DiffSourceDocumentRenderer.java │ │ │ │ ├── DiffView.java │ │ │ │ ├── DiffViewImpl.java │ │ │ │ ├── DiffViewImpl.ui.xml │ │ │ │ ├── change-op-add-icon.svg │ │ │ │ ├── change-op-remove-icon.svg │ │ │ │ └── diff.css │ │ │ ├── dispatch │ │ │ │ ├── BatchActionCallback.java │ │ │ │ ├── DispatchErrorMessageDisplay.java │ │ │ │ ├── DispatchServiceCallback.java │ │ │ │ ├── DispatchServiceCallbackInvoker.java │ │ │ │ ├── DispatchServiceCallbackWithProgressDisplay.java │ │ │ │ ├── DispatchServiceManager.java │ │ │ │ ├── MessageBoxErrorDisplay.java │ │ │ │ ├── PendingActionExecution.java │ │ │ │ ├── ProgressDisplay.java │ │ │ │ ├── ProgressDisplayImpl.java │ │ │ │ ├── SignInRequiredHandler.java │ │ │ │ ├── SignInRequiredHandlerImpl.java │ │ │ │ └── cache │ │ │ │ │ ├── AbstractResultCachingStrategy.java │ │ │ │ │ ├── GetClassFrameActionResultCachingStrategy.java │ │ │ │ │ ├── LookupEntitiesActionResultCachingStrategy.java │ │ │ │ │ ├── NullResultCacheInvalidationEventHandler.java │ │ │ │ │ ├── ResultCache.java │ │ │ │ │ ├── ResultCacheInvalidationEvent.java │ │ │ │ │ ├── ResultCacheInvalidationEventHandler.java │ │ │ │ │ └── ResultCachingStrategy.java │ │ │ ├── download │ │ │ │ ├── DownloadFormatExtensionHandler.java │ │ │ │ ├── DownloadSettingsDialog.java │ │ │ │ ├── DownloadSettingsView.java │ │ │ │ ├── DownloadSettingsViewImpl.java │ │ │ │ ├── DownloadSettingsViewImpl.ui.xml │ │ │ │ └── ProjectRevisionDownloader.java │ │ │ ├── editor │ │ │ │ ├── AnnotationPropertyFrameEditorManager.java │ │ │ │ ├── ClassEditorPortletPresenter.java │ │ │ │ ├── ClassFrameEditorManager.java │ │ │ │ ├── ContextMapper.java │ │ │ │ ├── DataPropertyFrameEditorManager.java │ │ │ │ ├── DeleteConfirmationPrompt.java │ │ │ │ ├── EditorContext.java │ │ │ │ ├── EditorContextChangedEvent.java │ │ │ │ ├── EditorContextChangedHandler.java │ │ │ │ ├── EditorCtx.java │ │ │ │ ├── EditorManager.java │ │ │ │ ├── EditorManagerSelector.java │ │ │ │ ├── EditorPaneEntityChangesPresenter.java │ │ │ │ ├── EditorPanePresenter.java │ │ │ │ ├── EditorPaneSimpleEditorPresenter.java │ │ │ │ ├── EditorPaneTabSelector.java │ │ │ │ ├── EditorPaneTabSelector.ui.xml │ │ │ │ ├── EditorPortletPresenter.java │ │ │ │ ├── EditorPortletView.java │ │ │ │ ├── EditorPortletViewImpl.java │ │ │ │ ├── EditorPortletViewImpl.ui.xml │ │ │ │ ├── EditorPresenter.java │ │ │ │ ├── EditorView.java │ │ │ │ ├── EntityManagerSelectorImpl.java │ │ │ │ ├── HasEditorContext.java │ │ │ │ ├── NamedIndividualEditorPortletPresenter.java │ │ │ │ ├── NamedIndividualFrameEditorManager.java │ │ │ │ ├── OWLEntityContext.java │ │ │ │ ├── ObjectPropertyFrameEditorManager.java │ │ │ │ ├── PropertyEditorPortletPresenter.java │ │ │ │ ├── ValueEditor.java │ │ │ │ ├── ValueEditorFactory.java │ │ │ │ ├── ValueList.java │ │ │ │ ├── ValueListEditor.java │ │ │ │ ├── ValueListFlexEditorContainer.java │ │ │ │ ├── ValueListFlexEditorContainer.ui.xml │ │ │ │ ├── ValueListFlexEditorDirection.java │ │ │ │ ├── ValueListFlexEditorImpl.java │ │ │ │ └── ValueListFlexEditorImpl.ui.xml │ │ │ ├── entitieslist │ │ │ │ ├── DefaultEntitiesListItemRenderer.java │ │ │ │ ├── EntitiesList.java │ │ │ │ ├── EntitiesListImpl.java │ │ │ │ ├── EntitiesListImpl.ui.xml │ │ │ │ └── EntitiesListItemRenderer.java │ │ │ ├── entity │ │ │ │ ├── CreateEntitiesDialogViewImpl.java │ │ │ │ ├── CreateEntitiesDialogViewImpl.ui.xml │ │ │ │ ├── CreateEntityDialogView.java │ │ │ │ ├── CreateEntityPresenter.java │ │ │ │ ├── CsvImportPresenter.java │ │ │ │ ├── DeprecatedEntitiesPresenter.java │ │ │ │ ├── DeprecatedEntitiesView.java │ │ │ │ ├── DeprecatedEntitiesViewImpl.java │ │ │ │ ├── DeprecatedEntitiesViewImpl.ui.xml │ │ │ │ ├── EntityItemMapper.java │ │ │ │ ├── EntityNodeHtmlRenderer.java │ │ │ │ ├── EntityNodeUpdater.java │ │ │ │ ├── MergeEntitiesPresenter.java │ │ │ │ ├── MergeEntitiesUiAction.java │ │ │ │ ├── MergeEntitiesView.java │ │ │ │ ├── MergeEntitiesViewImpl.java │ │ │ │ └── MergeEntitiesViewImpl.ui.xml │ │ │ ├── events │ │ │ │ ├── EventPollingManager.java │ │ │ │ ├── HasRequestRefreshEventHandler.java │ │ │ │ ├── RequestRefreshEvent.java │ │ │ │ ├── RequestRefreshEventHandler.java │ │ │ │ ├── UserLoggedInEvent.java │ │ │ │ ├── UserLoggedInHandler.java │ │ │ │ ├── UserLoggedOutEvent.java │ │ │ │ └── UserLoggedOutHandler.java │ │ │ ├── filter │ │ │ │ ├── FilterButton.java │ │ │ │ ├── FilterButtonImpl.java │ │ │ │ ├── FilterButtonImpl.ui.xml │ │ │ │ ├── FilterCheckBox.java │ │ │ │ ├── FilterCheckBox.ui.xml │ │ │ │ ├── FilterGroupHeader.java │ │ │ │ ├── FilterGroupHeader.ui.xml │ │ │ │ ├── FilterIdRenderer.java │ │ │ │ ├── FilterView.java │ │ │ │ ├── FilterViewImpl.java │ │ │ │ ├── FilterViewImpl.ui.xml │ │ │ │ └── FilterViewPopup.java │ │ │ ├── form │ │ │ │ ├── AnnotationPropertyValueAxiomParser.java │ │ │ │ ├── CheckBoxChoiceControl.java │ │ │ │ ├── CheckBoxChoiceControl.ui.xml │ │ │ │ ├── ChoiceControl.java │ │ │ │ ├── ChoiceDescriptorPresenter.java │ │ │ │ ├── ChoiceDescriptorSupplier.java │ │ │ │ ├── ChoiceDescriptorView.java │ │ │ │ ├── ChoiceDescriptorViewImpl.java │ │ │ │ ├── ChoiceDescriptorViewImpl.ui.xml │ │ │ │ ├── ChoiceListSourceDescriptorPresenter.java │ │ │ │ ├── ChoiceListSourceDescriptorView.java │ │ │ │ ├── ChoiceListSourceDescriptorViewImpl.java │ │ │ │ ├── ChoiceListSourceDescriptorViewImpl.ui.xml │ │ │ │ ├── ComboBoxChoiceControl.java │ │ │ │ ├── ComboBoxChoiceControl.ui.xml │ │ │ │ ├── CopyFormsFromProjectModalPresenter.java │ │ │ │ ├── CopyFormsFromProjectPresenter.java │ │ │ │ ├── CopyFormsFromProjectView.java │ │ │ │ ├── CopyFormsFromProjectViewImpl.java │ │ │ │ ├── CopyFormsFromProjectViewImpl.ui.xml │ │ │ │ ├── DynamicChoiceListSourceDescriptorPresenter.java │ │ │ │ ├── DynamicChoiceListSourceDescriptorView.java │ │ │ │ ├── DynamicChoiceListSourceDescriptorViewImpl.java │ │ │ │ ├── DynamicChoiceListSourceDescriptorViewImpl.ui.xml │ │ │ │ ├── EditFormActivity.java │ │ │ │ ├── EditFormPlace.java │ │ │ │ ├── EditFormPlaceTokenizer.java │ │ │ │ ├── EntityFormSelectorPresenter.java │ │ │ │ ├── EntityFormSelectorView.java │ │ │ │ ├── EntityFormSelectorViewImpl.java │ │ │ │ ├── EntityFormSelectorViewImpl.ui.xml │ │ │ │ ├── EntityFormStackPresenter.java │ │ │ │ ├── EntityFormStackView.java │ │ │ │ ├── EntityFormStackViewImpl.java │ │ │ │ ├── EntityFormStackViewImpl.ui.xml │ │ │ │ ├── EntityFormSubjectFactory.java │ │ │ │ ├── EntityNameControl.java │ │ │ │ ├── EntityNameControl.ui.xml │ │ │ │ ├── EntityNameControlCriteriaPresenterFactory.java │ │ │ │ ├── EntityNameControlDescriptorPresenter.java │ │ │ │ ├── EntityNameControlDescriptorPresenterFactory.java │ │ │ │ ├── EntityNameControlDescriptorView.java │ │ │ │ ├── EntityNameControlDescriptorViewImpl.java │ │ │ │ ├── EntityNameControlDescriptorViewImpl.ui.xml │ │ │ │ ├── EntityNameControlFilterPresenter.java │ │ │ │ ├── EntityNameControlFilterView.java │ │ │ │ ├── EntityNameControlFilterViewImpl.java │ │ │ │ ├── EntityNameControlFilterViewImpl.ui.xml │ │ │ │ ├── FixedChoiceListSourceDescriptorPresenter.java │ │ │ │ ├── FixedChoiceListSourceDescriptorView.java │ │ │ │ ├── FixedChoiceListSourceDescriptorViewImpl.java │ │ │ │ ├── FixedChoiceListSourceDescriptorViewImpl.ui.xml │ │ │ │ ├── FormContainer.java │ │ │ │ ├── FormControl.java │ │ │ │ ├── FormControlContainerImpl.java │ │ │ │ ├── FormControlContainerImpl.ui.xml │ │ │ │ ├── FormControlContainerStyle.java │ │ │ │ ├── FormControlDataEditorFactory.java │ │ │ │ ├── FormControlDescriptorChooserPresenter.java │ │ │ │ ├── FormControlDescriptorChooserView.java │ │ │ │ ├── FormControlDescriptorChooserViewImpl.java │ │ │ │ ├── FormControlDescriptorChooserViewImpl.ui.xml │ │ │ │ ├── FormControlDescriptorPresenter.java │ │ │ │ ├── FormControlDescriptorPresenterFactory.java │ │ │ │ ├── FormControlFactory.java │ │ │ │ ├── FormControlFilterMapper.java │ │ │ │ ├── FormControlFilterPresenter.java │ │ │ │ ├── FormControlStackNonRepeatingPresenter.java │ │ │ │ ├── FormControlStackPresenter.java │ │ │ │ ├── FormControlStackPresenterFactory.java │ │ │ │ ├── FormControlStackRepeatingPresenter.java │ │ │ │ ├── FormControlStackRepeatingView.java │ │ │ │ ├── FormControlStackRepeatingViewImpl.java │ │ │ │ ├── FormControlStackRepeatingViewImpl.ui.xml │ │ │ │ ├── FormControlStackView.java │ │ │ │ ├── FormControlStackViewImpl.java │ │ │ │ ├── FormControlStackViewImpl.ui.xml │ │ │ │ ├── FormDescriptorPresenter.java │ │ │ │ ├── FormDescriptorView.java │ │ │ │ ├── FormDescriptorViewImpl.java │ │ │ │ ├── FormDescriptorViewImpl.ui.xml │ │ │ │ ├── FormEditorPresenter.java │ │ │ │ ├── FormEditorView.java │ │ │ │ ├── FormEditorViewImpl.java │ │ │ │ ├── FormEditorViewImpl.ui.xml │ │ │ │ ├── FormFieldDescriptorObjectListPresenter.java │ │ │ │ ├── FormFieldDescriptorPresenter.java │ │ │ │ ├── FormFieldDescriptorView.java │ │ │ │ ├── FormFieldDescriptorViewImpl.java │ │ │ │ ├── FormFieldDescriptorViewImpl.ui.xml │ │ │ │ ├── FormFieldPresenter.java │ │ │ │ ├── FormFieldPresenterFactory.java │ │ │ │ ├── FormFieldView.java │ │ │ │ ├── FormFieldViewImpl.java │ │ │ │ ├── FormFieldViewImpl.ui.xml │ │ │ │ ├── FormIdPresenter.java │ │ │ │ ├── FormIdView.java │ │ │ │ ├── FormIdViewImpl.java │ │ │ │ ├── FormIdViewImpl.ui.xml │ │ │ │ ├── FormLanguageFilterStash.java │ │ │ │ ├── FormPortletPresenter.java │ │ │ │ ├── FormPresenter.java │ │ │ │ ├── FormRegionFilterChangedEvent.java │ │ │ │ ├── FormRegionFilterChangedHandler.java │ │ │ │ ├── FormRegionOrderingChangedHandler.java │ │ │ │ ├── FormRegionPageChangedEvent.java │ │ │ │ ├── FormRegionPosition.java │ │ │ │ ├── FormStackContainer.java │ │ │ │ ├── FormStackContainer.ui.xml │ │ │ │ ├── FormStackPresenter.java │ │ │ │ ├── FormStackView.java │ │ │ │ ├── FormStackViewImpl.java │ │ │ │ ├── FormStackViewImpl.ui.xml │ │ │ │ ├── FormSubjectFactoryDescriptorPresenter.java │ │ │ │ ├── FormSubjectFactoryDescriptorView.java │ │ │ │ ├── FormSubjectFactoryDescriptorViewImpl.java │ │ │ │ ├── FormSubjectFactoryDescriptorViewImpl.ui.xml │ │ │ │ ├── FormTabBarPresenter.java │ │ │ │ ├── FormTabBarView.java │ │ │ │ ├── FormTabBarViewImpl.java │ │ │ │ ├── FormTabBarViewImpl.ui.xml │ │ │ │ ├── FormTabPresenter.java │ │ │ │ ├── FormTabView.java │ │ │ │ ├── FormTabViewImpl.java │ │ │ │ ├── FormTabViewImpl.ui.xml │ │ │ │ ├── FormView.java │ │ │ │ ├── FormViewImpl.java │ │ │ │ ├── FormViewImpl.ui.xml │ │ │ │ ├── FormViewRow.java │ │ │ │ ├── FormViewRowImpl.java │ │ │ │ ├── FormViewRowImpl.ui.xml │ │ │ │ ├── FormsActivity.java │ │ │ │ ├── FormsDownloader.java │ │ │ │ ├── FormsManagerObjectListDefaultObjectProvider.java │ │ │ │ ├── FormsManagerObjectListPresenter.java │ │ │ │ ├── FormsManagerObjectPresenter.java │ │ │ │ ├── FormsManagerObjectView.java │ │ │ │ ├── FormsManagerObjectViewImpl.java │ │ │ │ ├── FormsManagerObjectViewImpl.ui.xml │ │ │ │ ├── FormsManagerPresenter.java │ │ │ │ ├── FormsManagerService.java │ │ │ │ ├── FormsManagerView.java │ │ │ │ ├── FormsManagerViewImpl.java │ │ │ │ ├── FormsManagerViewImpl.ui.xml │ │ │ │ ├── FormsPlace.java │ │ │ │ ├── FormsPlaceTokenizer.java │ │ │ │ ├── GridCellContainer.java │ │ │ │ ├── GridCellContainerImpl.java │ │ │ │ ├── GridCellPresenter.java │ │ │ │ ├── GridCellView.java │ │ │ │ ├── GridCellViewImpl.java │ │ │ │ ├── GridCellViewImpl.ui.xml │ │ │ │ ├── GridColumnDescriptorObjectListPresenter.java │ │ │ │ ├── GridColumnDescriptorPresenter.java │ │ │ │ ├── GridColumnDescriptorView.java │ │ │ │ ├── GridColumnDescriptorViewImpl.java │ │ │ │ ├── GridColumnDescriptorViewImpl.ui.xml │ │ │ │ ├── GridColumnFilterContainer.java │ │ │ │ ├── GridColumnFilterContainerImpl.java │ │ │ │ ├── GridColumnFilterContainerImpl.ui.xml │ │ │ │ ├── GridColumnFilterPresenter.java │ │ │ │ ├── GridColumnFilterView.java │ │ │ │ ├── GridColumnFilterViewImpl.java │ │ │ │ ├── GridColumnFilterViewImpl.ui.xml │ │ │ │ ├── GridColumnVisibilityManager.java │ │ │ │ ├── GridControl.java │ │ │ │ ├── GridControlDescriptorPresenter.java │ │ │ │ ├── GridControlDescriptorPresenterFactory.java │ │ │ │ ├── GridControlDescriptorView.java │ │ │ │ ├── GridControlDescriptorViewImpl.java │ │ │ │ ├── GridControlDescriptorViewImpl.ui.xml │ │ │ │ ├── GridFilterPresenter.java │ │ │ │ ├── GridFilterView.java │ │ │ │ ├── GridFilterViewImpl.java │ │ │ │ ├── GridFilterViewImpl.ui.xml │ │ │ │ ├── GridHeaderCellContainer.java │ │ │ │ ├── GridHeaderCellContainerImpl.java │ │ │ │ ├── GridHeaderCellView.java │ │ │ │ ├── GridHeaderCellViewImpl.java │ │ │ │ ├── GridHeaderCellViewImpl.ui.xml │ │ │ │ ├── GridHeaderColumnPresenter.java │ │ │ │ ├── GridHeaderPresenter.java │ │ │ │ ├── GridHeaderView.java │ │ │ │ ├── GridHeaderViewImpl.java │ │ │ │ ├── GridHeaderViewImpl.ui.xml │ │ │ │ ├── GridPresenter.java │ │ │ │ ├── GridRowPresenter.java │ │ │ │ ├── GridRowView.java │ │ │ │ ├── GridRowViewContainer.java │ │ │ │ ├── GridRowViewContainerCss.java │ │ │ │ ├── GridRowViewContainerImpl.java │ │ │ │ ├── GridRowViewContainerImpl.ui.xml │ │ │ │ ├── GridRowViewImpl.java │ │ │ │ ├── GridRowViewImpl.ui.xml │ │ │ │ ├── GridView.java │ │ │ │ ├── GridViewImpl.java │ │ │ │ ├── GridViewImpl.ui.xml │ │ │ │ ├── HasFormPageRequests.java │ │ │ │ ├── HasFormRegionFilterChangedHandler.java │ │ │ │ ├── HasGridColumnFilter.java │ │ │ │ ├── HasGridColumnOrdering.java │ │ │ │ ├── HasGridColumnVisibilityManager.java │ │ │ │ ├── ImageControl.java │ │ │ │ ├── ImageControl.ui.xml │ │ │ │ ├── ImageDescriptorPresenter.java │ │ │ │ ├── ImageDescriptorPresenterFactory.java │ │ │ │ ├── ImageDescriptorView.java │ │ │ │ ├── ImageDescriptorViewImpl.java │ │ │ │ ├── ImageDescriptorViewImpl.ui.xml │ │ │ │ ├── LanguageMapCurrentLocaleMapper.java │ │ │ │ ├── LanguageMapEditor.java │ │ │ │ ├── LanguageMapEditor.ui.xml │ │ │ │ ├── LanguageMapEntryPresenter.java │ │ │ │ ├── LanguageMapEntryView.java │ │ │ │ ├── LanguageMapEntryViewImpl.java │ │ │ │ ├── LanguageMapEntryViewImpl.ui.xml │ │ │ │ ├── MultiChoiceControlDescriptorPresenter.java │ │ │ │ ├── MultiChoiceControlDescriptorPresenterFactory.java │ │ │ │ ├── MultiChoiceControlDescriptorView.java │ │ │ │ ├── MultiChoiceControlDescriptorViewImpl.java │ │ │ │ ├── MultiChoiceControlDescriptorViewImpl.ui.xml │ │ │ │ ├── MultiValueChoiceControl.java │ │ │ │ ├── NoControlDescriptorView.java │ │ │ │ ├── NoControlDescriptorViewImpl.java │ │ │ │ ├── NoControlDescriptorViewImpl.ui.xml │ │ │ │ ├── NoFormDescriptorSelectedView.java │ │ │ │ ├── NoFormDescriptorSelectedViewImpl.java │ │ │ │ ├── NoFormDescriptorSelectedViewImpl.ui.xml │ │ │ │ ├── NoFormView.java │ │ │ │ ├── NoFormViewImpl.java │ │ │ │ ├── NoFormViewImpl.ui.xml │ │ │ │ ├── NumberControlDescriptorPresenter.java │ │ │ │ ├── NumberControlDescriptorPresenterFactory.java │ │ │ │ ├── NumberControlDescriptorView.java │ │ │ │ ├── NumberControlDescriptorViewImpl.java │ │ │ │ ├── NumberControlDescriptorViewImpl.ui.xml │ │ │ │ ├── NumberControlFilterPresenter.java │ │ │ │ ├── NumberControlFilterView.java │ │ │ │ ├── NumberControlFilterViewImpl.java │ │ │ │ ├── NumberControlFilterViewImpl.ui.xml │ │ │ │ ├── NumberControlRangePresenter.java │ │ │ │ ├── NumberControlRangeView.java │ │ │ │ ├── NumberControlRangeViewImpl.java │ │ │ │ ├── NumberControlRangeViewImpl.ui.xml │ │ │ │ ├── NumberEditorControl.java │ │ │ │ ├── NumberEditorControl.ui.xml │ │ │ │ ├── ObjectListPresenter.java │ │ │ │ ├── ObjectListView.java │ │ │ │ ├── ObjectListViewHolder.java │ │ │ │ ├── ObjectListViewHolderImpl.java │ │ │ │ ├── ObjectListViewHolderImpl.ui.xml │ │ │ │ ├── ObjectListViewImpl.java │ │ │ │ ├── ObjectListViewImpl.ui.xml │ │ │ │ ├── ObjectPresenter.java │ │ │ │ ├── ObjectPresenterProvider.java │ │ │ │ ├── OwlBindingPresenter.java │ │ │ │ ├── OwlBindingView.java │ │ │ │ ├── OwlBindingViewImpl.java │ │ │ │ ├── OwlBindingViewImpl.ui.xml │ │ │ │ ├── ParentClassAxiomParser.java │ │ │ │ ├── PrimitiveDataFormControlValueFilterChangedHandler.java │ │ │ │ ├── PrimitiveFormControlDataFilterPresenter.java │ │ │ │ ├── RadioButtonChoiceControl.java │ │ │ │ ├── RadioButtonChoiceControl.ui.xml │ │ │ │ ├── RepeatabilityView.java │ │ │ │ ├── RepeatabilityViewImpl.java │ │ │ │ ├── RepeatabilityViewImpl.ui.xml │ │ │ │ ├── SegmentedButtonChoiceControl.java │ │ │ │ ├── SegmentedButtonChoiceControl.ui.xml │ │ │ │ ├── SelectedFormIdStash.java │ │ │ │ ├── SingleChoiceControl.java │ │ │ │ ├── SingleChoiceControlDescriptorPresenterFactory.java │ │ │ │ ├── SingleChoiceControlDescriptorView.java │ │ │ │ ├── SingleChoiceControlDescriptorViewImpl.java │ │ │ │ ├── SingleChoiceControlDescriptorViewImpl.ui.xml │ │ │ │ ├── SingleChoiceControlFilterPresenter.java │ │ │ │ ├── SingleChoiceControlFilterView.java │ │ │ │ ├── SingleChoiceControlFilterViewImpl.java │ │ │ │ ├── SingleChoiceControlFilterViewImpl.ui.xml │ │ │ │ ├── SingleControlDescriptorPresenter.java │ │ │ │ ├── SubFormControl.java │ │ │ │ ├── SubFormControlDescriptorPresenter.java │ │ │ │ ├── SubFormControlDescriptorPresenterFactory.java │ │ │ │ ├── SubFormControlDescriptorView.java │ │ │ │ ├── SubFormControlDescriptorViewImpl.java │ │ │ │ ├── SubFormControlDescriptorViewImpl.ui.xml │ │ │ │ ├── TextControl.java │ │ │ │ ├── TextControl.ui.xml │ │ │ │ ├── TextControlDescriptorPresenter.java │ │ │ │ ├── TextControlDescriptorPresenterFactory.java │ │ │ │ ├── TextControlDescriptorView.java │ │ │ │ ├── TextControlDescriptorViewImpl.java │ │ │ │ ├── TextControlDescriptorViewImpl.ui.xml │ │ │ │ ├── TextControlFilterPresenter.java │ │ │ │ ├── TextControlFilterView.java │ │ │ │ ├── TextControlFilterViewImpl.java │ │ │ │ ├── TextControlFilterViewImpl.ui.xml │ │ │ │ └── input │ │ │ │ │ ├── CheckBox.java │ │ │ │ │ ├── CheckBoxPresenter.java │ │ │ │ │ ├── CheckBoxResourceBundle.java │ │ │ │ │ ├── CheckBoxView.java │ │ │ │ │ ├── CheckBoxViewImpl.java │ │ │ │ │ ├── CheckBoxViewImpl.ui.xml │ │ │ │ │ └── checkbox.css │ │ │ ├── frame │ │ │ │ ├── AnnotationPropertyFrameEditor.java │ │ │ │ ├── AnnotationPropertyFrameEditor.ui.xml │ │ │ │ ├── ApplyChangesActionHandler.java │ │ │ │ ├── ApplyChangesActionView.java │ │ │ │ ├── ApplyChangesActionViewImpl.java │ │ │ │ ├── ApplyChangesActionViewImpl.ui.xml │ │ │ │ ├── ClassFrameEditor.java │ │ │ │ ├── ClassFrameEditor.ui.xml │ │ │ │ ├── ClassFrameEditorPresenter.java │ │ │ │ ├── CreateAsEntityTypeHandler.java │ │ │ │ ├── DataPropertyFrameEditor.java │ │ │ │ ├── DataPropertyFrameEditor.ui.xml │ │ │ │ ├── EntityFrameEditor.java │ │ │ │ ├── FieldType.java │ │ │ │ ├── ManchesterSyntaxFrameAutoCompletionHandler.java │ │ │ │ ├── ManchesterSyntaxFrameEditor.java │ │ │ │ ├── ManchesterSyntaxFrameEditorErrorMessageView.java │ │ │ │ ├── ManchesterSyntaxFrameEditorErrorMessageViewImpl.java │ │ │ │ ├── ManchesterSyntaxFrameEditorErrorMessageViewImpl.ui.xml │ │ │ │ ├── ManchesterSyntaxFrameEditorImpl.java │ │ │ │ ├── ManchesterSyntaxFrameEditorImpl.ui.xml │ │ │ │ ├── ManchesterSyntaxFrameEditorPresenter.java │ │ │ │ ├── NamedIndividualFrameEditor.java │ │ │ │ ├── NamedIndividualFrameEditor.ui.xml │ │ │ │ ├── OWLEntityDescriptionEditorPortletPresenter.java │ │ │ │ ├── ObjectPropertyFrameEditor.java │ │ │ │ ├── ObjectPropertyFrameEditor.ui.xml │ │ │ │ ├── PropertyValueDescriptorEditor.java │ │ │ │ ├── PropertyValueDescriptorEditorImpl.java │ │ │ │ ├── PropertyValueDescriptorEditorImpl.ui.xml │ │ │ │ ├── PropertyValueDescriptorEditorPresenter.java │ │ │ │ ├── PropertyValueGridGrammar.java │ │ │ │ ├── PropertyValueListEditor.java │ │ │ │ ├── PropertyValuePropertyChangedEvent.java │ │ │ │ ├── PropertyValuePropertyChangedHandler.java │ │ │ │ ├── PropertyValueValueChangedEvent.java │ │ │ │ └── PropertyValueValueChangedHandler.java │ │ │ ├── graphlib │ │ │ │ ├── EdgeDetails.java │ │ │ │ ├── EdgeKey.java │ │ │ │ ├── EdgeLabelFunction.java │ │ │ │ ├── EntityGraph2Graph.java │ │ │ │ ├── Graph.java │ │ │ │ ├── Graph2Svg.java │ │ │ │ ├── GraphConstants.java │ │ │ │ ├── GraphDetails.java │ │ │ │ ├── GraphLibAlgorithm.java │ │ │ │ ├── GraphLibJson.java │ │ │ │ ├── NodeDetails.java │ │ │ │ └── Point.java │ │ │ ├── help │ │ │ │ ├── HelpPresenter.java │ │ │ │ ├── HelpView.java │ │ │ │ ├── HelpViewImpl.java │ │ │ │ ├── HelpViewImpl.ui.xml │ │ │ │ ├── ShowAboutBoxHandler.java │ │ │ │ ├── ShowAboutBoxHandlerImpl.java │ │ │ │ ├── ShowUserGuideHandler.java │ │ │ │ └── ShowUserGuideHandlerImpl.java │ │ │ ├── hierarchy │ │ │ │ ├── ClassHierarchyPortletPresenter.java │ │ │ │ ├── CreateEntitiesInHierarchyHandler.java │ │ │ │ ├── DeleteEntitiesPresenter.java │ │ │ │ ├── EntityHierarchyContextMenuPresenter.java │ │ │ │ ├── EntityHierarchyDropHandler.java │ │ │ │ ├── EntityHierarchyModel.java │ │ │ │ ├── HierarchyActionStatePresenter.java │ │ │ │ ├── HierarchyFieldPresenter.java │ │ │ │ ├── HierarchyFieldView.java │ │ │ │ ├── HierarchyFieldViewImpl.java │ │ │ │ ├── HierarchyFieldViewImpl.ui.xml │ │ │ │ ├── HierarchyPopupPresenter.java │ │ │ │ ├── HierarchyPopupView.java │ │ │ │ ├── HierarchyPopupViewImpl.java │ │ │ │ ├── HierarchyPopupViewImpl.ui.xml │ │ │ │ ├── HierarchyPositionCriteriaListPresenter.java │ │ │ │ ├── HierarchyPositionCriteriaPresenter.java │ │ │ │ ├── HierarchyPositionCriteriaPresenterFactory.java │ │ │ │ ├── PropertyHierarchyPortletPresenter.java │ │ │ │ ├── PropertyHierarchyPortletView.java │ │ │ │ ├── PropertyHierarchyPortletViewImpl.java │ │ │ │ ├── PropertyHierarchyPortletViewImpl.ui.xml │ │ │ │ └── TreeWidgetUpdater.java │ │ │ ├── individualslist │ │ │ │ ├── EntityNodeListCellRenderer.java │ │ │ │ ├── IndividualsListPortletPresenter.java │ │ │ │ ├── IndividualsListPresenter.java │ │ │ │ ├── IndividualsListView.java │ │ │ │ ├── IndividualsListViewImpl.java │ │ │ │ ├── IndividualsListViewImpl.ui.xml │ │ │ │ └── InstanceRetrievalTypeChangedHandler.java │ │ │ ├── inject │ │ │ │ ├── ActiveProjectIdProvider.java │ │ │ │ ├── ClientApplicationComponent.java │ │ │ │ ├── ClientApplicationModule.java │ │ │ │ ├── ClientIssuesModule.java │ │ │ │ ├── ClientProjectComponent.java │ │ │ │ ├── ClientProjectModule.java │ │ │ │ └── WebProtegeClientInjector.java │ │ │ ├── issues │ │ │ │ ├── AddThreadHandler.java │ │ │ │ ├── CommentAutoCompleter.java │ │ │ │ ├── CommentEditorModal.java │ │ │ │ ├── CommentEditorView.java │ │ │ │ ├── CommentEditorViewImpl.java │ │ │ │ ├── CommentEditorViewImpl.ui.xml │ │ │ │ ├── CommentView.java │ │ │ │ ├── CommentViewFactory.java │ │ │ │ ├── CommentViewImpl.java │ │ │ │ ├── CommentViewImpl.ui.xml │ │ │ │ ├── CommentedEntitiesPortletPresenter.java │ │ │ │ ├── CommentedEntitiesPresenter.java │ │ │ │ ├── CommentedEntitiesView.java │ │ │ │ ├── CommentedEntitiesViewImpl.java │ │ │ │ ├── CommentedEntitiesViewImpl.ui.xml │ │ │ │ ├── CommentedEntityDataRenderer.java │ │ │ │ ├── CommentedEntityDataRenderer.ui.xml │ │ │ │ ├── CommentedEntityDataRendering.java │ │ │ │ ├── DeleteCommentHandler.java │ │ │ │ ├── DiscussionThreadListPresenter.java │ │ │ │ ├── DiscussionThreadListView.java │ │ │ │ ├── DiscussionThreadListViewImpl.java │ │ │ │ ├── DiscussionThreadListViewImpl.ui.xml │ │ │ │ ├── DiscussionThreadPresenter.java │ │ │ │ ├── DiscussionThreadView.java │ │ │ │ ├── DiscussionThreadViewImpl.java │ │ │ │ ├── DiscussionThreadViewImpl.ui.xml │ │ │ │ ├── EditCommentHandler.java │ │ │ │ ├── EntityDiscussionThreadPortletPresenter.java │ │ │ │ ├── ReplyToCommentHandler.java │ │ │ │ └── StatusChangedHandler.java │ │ │ ├── lang │ │ │ │ ├── DefaultDictionaryLanguageView.java │ │ │ │ ├── DefaultDictionaryLanguageViewImpl.java │ │ │ │ ├── DefaultDictionaryLanguageViewImpl.ui.xml │ │ │ │ ├── DefaultDisplayNameSettingsPresenter.java │ │ │ │ ├── DefaultDisplayNameSettingsView.java │ │ │ │ ├── DefaultDisplayNameSettingsViewImpl.java │ │ │ │ ├── DefaultDisplayNameSettingsViewImpl.ui.xml │ │ │ │ ├── DefaultLanguageTagView.java │ │ │ │ ├── DefaultLanguageTagViewImpl.java │ │ │ │ ├── DefaultLanguageTagViewImpl.ui.xml │ │ │ │ ├── DictionaryLanguageDataEditor.java │ │ │ │ ├── DictionaryLanguageDataView.java │ │ │ │ ├── DictionaryLanguageDataViewImpl.java │ │ │ │ ├── DictionaryLanguageDataViewImpl.ui.xml │ │ │ │ ├── DictionaryLanguageIO.java │ │ │ │ ├── DisplayLanguageStorage.java │ │ │ │ ├── DisplayNameRenderer.java │ │ │ │ ├── DisplayNameSettingsManager.java │ │ │ │ ├── DisplayNameSettingsPresenter.java │ │ │ │ ├── DisplayNameSettingsTopBarPresenter.java │ │ │ │ ├── DisplayNameSettingsTopBarView.java │ │ │ │ ├── DisplayNameSettingsTopBarViewImpl.java │ │ │ │ ├── DisplayNameSettingsTopBarViewImpl.ui.xml │ │ │ │ ├── DisplayNameSettingsView.java │ │ │ │ ├── DisplayNameSettingsViewImpl.java │ │ │ │ ├── DisplayNameSettingsViewImpl.ui.xml │ │ │ │ ├── LangCodeSuggestion.java │ │ │ │ ├── LangCodesProvider.java │ │ │ │ ├── LangSuggestOracle.java │ │ │ │ ├── LangTagFilterPresenter.java │ │ │ │ ├── LangTagFilterView.java │ │ │ │ ├── LangTagFilterViewImpl.java │ │ │ │ ├── LangTagFilterViewImpl.ui.xml │ │ │ │ ├── LanguageCodes.java │ │ │ │ ├── LanguageMapChangedHandler.java │ │ │ │ ├── LanguageUsageView.java │ │ │ │ ├── LanguageUsageViewImpl.java │ │ │ │ └── LanguageUsageViewImpl.ui.xml │ │ │ ├── library │ │ │ │ ├── button │ │ │ │ │ └── DeleteButton.java │ │ │ │ ├── checkbox │ │ │ │ │ ├── AxiomTypeGroupCheckBox.java │ │ │ │ │ └── EntityTypeGroupCheckBox.java │ │ │ │ ├── common │ │ │ │ │ ├── EditingCancelledEvent.java │ │ │ │ │ ├── EditingCancelledHandler.java │ │ │ │ │ ├── EditingFinishedEvent.java │ │ │ │ │ ├── EditingFinishedHandler.java │ │ │ │ │ ├── EventStrategy.java │ │ │ │ │ ├── HasEditable.java │ │ │ │ │ ├── HasEditingCancelledHandlers.java │ │ │ │ │ ├── HasEditingFinishedHandlers.java │ │ │ │ │ ├── HasLinkHandlers.java │ │ │ │ │ ├── HasPlaceholder.java │ │ │ │ │ ├── HasTextRendering.java │ │ │ │ │ ├── LinkClickedEvent.java │ │ │ │ │ ├── LinkClickedHandler.java │ │ │ │ │ └── Refreshable.java │ │ │ │ ├── dlg │ │ │ │ │ ├── AcceptKeyHandler.java │ │ │ │ │ ├── DefaultWebProtegeDialogButtonHandler.java │ │ │ │ │ ├── DialogButton.java │ │ │ │ │ ├── FocusWidgetGroup.java │ │ │ │ │ ├── HasAcceptKeyHandler.java │ │ │ │ │ ├── HasInitialFocusable.java │ │ │ │ │ ├── HasRequestFocus.java │ │ │ │ │ ├── InlineValidationResult.java │ │ │ │ │ ├── NonEmptyWebProtegeDialogTextFieldValidator.java │ │ │ │ │ ├── NullDialogValidator.java │ │ │ │ │ ├── NullWebProtegeDialogTextFieldValidator.java │ │ │ │ │ ├── TextBoxValueRequirement.java │ │ │ │ │ ├── ValidationState.java │ │ │ │ │ ├── WebProtegeDialog.java │ │ │ │ │ ├── WebProtegeDialogButtonHandler.java │ │ │ │ │ ├── WebProtegeDialogCloser.java │ │ │ │ │ ├── WebProtegeDialogController.java │ │ │ │ │ ├── WebProtegeDialogForm.java │ │ │ │ │ ├── WebProtegeDialogInlineValidator.java │ │ │ │ │ ├── WebProtegeDialogLabel.java │ │ │ │ │ ├── WebProtegeDialogTextFieldValidationManager.java │ │ │ │ │ ├── WebProtegeDialogValidator.java │ │ │ │ │ ├── WebProtegeLabel.java │ │ │ │ │ ├── WebProtegeOKCancelDialogController.java │ │ │ │ │ ├── WebProtegeOKDialogController.java │ │ │ │ │ ├── WebProtegePanel.java │ │ │ │ │ ├── WebProtegeYesNoDialogController.java │ │ │ │ │ └── WidgetGroup.java │ │ │ │ ├── entitylabel │ │ │ │ │ ├── EntityLabel.java │ │ │ │ │ └── EntityLabel.ui.xml │ │ │ │ ├── modal │ │ │ │ │ ├── ModalButtonHandler.java │ │ │ │ │ ├── ModalCallback.java │ │ │ │ │ ├── ModalCloser.java │ │ │ │ │ ├── ModalManager.java │ │ │ │ │ ├── ModalPresenter.java │ │ │ │ │ ├── ModalView.java │ │ │ │ │ ├── ModalViewImpl.java │ │ │ │ │ └── ModalViewImpl.ui.xml │ │ │ │ ├── msgbox │ │ │ │ │ ├── InputBox.java │ │ │ │ │ ├── InputBoxHandler.java │ │ │ │ │ ├── InputBoxView.java │ │ │ │ │ ├── InputBoxViewImpl.java │ │ │ │ │ ├── InputBoxViewImpl.ui.xml │ │ │ │ │ ├── MessageBox.java │ │ │ │ │ ├── MessageBoxView.java │ │ │ │ │ ├── MessageBoxViewImpl.java │ │ │ │ │ ├── MessageBoxViewImpl.ui.xml │ │ │ │ │ ├── MessageStyle.java │ │ │ │ │ ├── OKCancelHandler.java │ │ │ │ │ └── YesNoHandler.java │ │ │ │ ├── popupmenu │ │ │ │ │ ├── MenuButton.java │ │ │ │ │ ├── MenuButton.ui.xml │ │ │ │ │ ├── MenuItem.java │ │ │ │ │ ├── MenuItem.ui.xml │ │ │ │ │ ├── PopupMenu.java │ │ │ │ │ ├── PopupMenuContainer.java │ │ │ │ │ └── PopupMenuContainer.ui.xml │ │ │ │ ├── richtext │ │ │ │ │ ├── FontStyle.java │ │ │ │ │ ├── FontWeight.java │ │ │ │ │ ├── FormattingChangedHandler.java │ │ │ │ │ ├── RichTextEditorPresenter.java │ │ │ │ │ ├── RichTextEditorView.java │ │ │ │ │ ├── RichTextEditorViewImpl.java │ │ │ │ │ ├── RichTextEditorViewImpl.ui.xml │ │ │ │ │ ├── RichTextToolbar.java │ │ │ │ │ ├── RichTextToolbarHandler.java │ │ │ │ │ ├── RichTextToolbarImpl.java │ │ │ │ │ ├── RichTextToolbarImpl.ui.xml │ │ │ │ │ └── TextDecoration.java │ │ │ │ ├── suggest │ │ │ │ │ ├── EntitySuggestOracle.java │ │ │ │ │ └── EntitySuggestion.java │ │ │ │ ├── text │ │ │ │ │ ├── ExpandingTextBox.java │ │ │ │ │ ├── ExpandingTextBoxImpl.java │ │ │ │ │ ├── ExpandingTextBoxImpl.ui.xml │ │ │ │ │ ├── ExpandingTextBoxMode.java │ │ │ │ │ └── PlaceholderTextBox.java │ │ │ │ ├── timelabel │ │ │ │ │ ├── ElapsedTimeLabel.java │ │ │ │ │ └── ElapsedTimeLabel.ui.xml │ │ │ │ └── tokenfield │ │ │ │ │ ├── AddTokenCallback.java │ │ │ │ │ ├── AddTokenPrompt.java │ │ │ │ │ ├── TokenFieldPresenter.java │ │ │ │ │ ├── TokenFieldView.java │ │ │ │ │ ├── TokenFieldViewImpl.java │ │ │ │ │ ├── TokenFieldViewImpl.ui.xml │ │ │ │ │ ├── TokenPresenter.java │ │ │ │ │ ├── TokenPresenterFactory.java │ │ │ │ │ ├── TokenView.java │ │ │ │ │ ├── TokenViewImpl.java │ │ │ │ │ └── TokenViewImpl.ui.xml │ │ │ ├── list │ │ │ │ ├── EntityNodeListPopupPresenter.java │ │ │ │ ├── EntityNodeListPopupView.java │ │ │ │ ├── EntityNodeListPopupViewImpl.java │ │ │ │ ├── EntityNodeListPopupViewImpl.ui.xml │ │ │ │ ├── ListBox.java │ │ │ │ ├── ListBox.ui.xml │ │ │ │ └── ListBoxCellRenderer.java │ │ │ ├── login │ │ │ │ ├── ForgotPasswordHandler.java │ │ │ │ ├── LoginPresenter.java │ │ │ │ ├── LoginView.java │ │ │ │ ├── LoginViewImpl.java │ │ │ │ ├── LoginViewImpl.ui.xml │ │ │ │ ├── SignInRequestHandler.java │ │ │ │ ├── SignInRequestHandlerImpl.java │ │ │ │ └── SignUpForAccountHandler.java │ │ │ ├── logout │ │ │ │ ├── LogoutHandler.java │ │ │ │ ├── LogoutPresenter.java │ │ │ │ ├── LogoutView.java │ │ │ │ ├── LogoutViewImpl.java │ │ │ │ └── LogoutViewImpl.ui.xml │ │ │ ├── mail │ │ │ │ ├── ChangeEmailAddressPresenter.java │ │ │ │ ├── EmailAddressEditor.java │ │ │ │ ├── EmailAddressEditorImpl.java │ │ │ │ └── EmailAddressEditorImpl.ui.xml │ │ │ ├── match │ │ │ │ ├── AnnotationCriteriaPresenter.java │ │ │ │ ├── AnnotationCriteriaPresenterFactory.java │ │ │ │ ├── AnnotationCriteriaView.java │ │ │ │ ├── AnnotationCriteriaViewImpl.java │ │ │ │ ├── AnnotationCriteriaViewImpl.ui.xml │ │ │ │ ├── AnnotationPropertyCriteriaView.java │ │ │ │ ├── AnnotationPropertyCriteriaViewImpl.java │ │ │ │ ├── AnnotationPropertyCriteriaViewImpl.ui.xml │ │ │ │ ├── AnnotationPropertyPairView.java │ │ │ │ ├── AnnotationPropertyPairViewImpl.java │ │ │ │ ├── AnnotationPropertyPairViewImpl.ui.xml │ │ │ │ ├── AnnotationValueCriteriaPresenter.java │ │ │ │ ├── AnnotationValueCriteriaPresenterFactory.java │ │ │ │ ├── AnnotationValueListCriteriaPresenter.java │ │ │ │ ├── AnyAnnotationValueCriteriaPresenter.java │ │ │ │ ├── AnyAnnotationValueCriteriaPresenterFactory.java │ │ │ │ ├── BlankCriteriaView.java │ │ │ │ ├── BlankCriteriaViewImpl.java │ │ │ │ ├── BlankCriteriaViewImpl.ui.xml │ │ │ │ ├── ClassSelectorView.java │ │ │ │ ├── ClassSelectorViewImpl.java │ │ │ │ ├── ClassSelectorViewImpl.ui.xml │ │ │ │ ├── CriteriaListCriteriaViewContainer.java │ │ │ │ ├── CriteriaListPresenter.java │ │ │ │ ├── CriteriaListView.java │ │ │ │ ├── CriteriaListViewImpl.java │ │ │ │ ├── CriteriaListViewImpl.ui.xml │ │ │ │ ├── CriteriaListViewViewContainerImpl.java │ │ │ │ ├── CriteriaListViewViewContainerImpl.ui.xml │ │ │ │ ├── CriteriaPresenter.java │ │ │ │ ├── CriteriaPresenterFactory.java │ │ │ │ ├── DateIsAfterPresenter.java │ │ │ │ ├── DateIsAfterPresenterFactory.java │ │ │ │ ├── DateIsBeforePresenter.java │ │ │ │ ├── DateIsBeforePresenterFactory.java │ │ │ │ ├── DateTimeValueCriteriaPresenter.java │ │ │ │ ├── DateTimeValueCriteriaPresenterFactory.java │ │ │ │ ├── DateTimeValueCriteriaView.java │ │ │ │ ├── DateView.java │ │ │ │ ├── DateViewImpl.java │ │ │ │ ├── DateViewImpl.ui.xml │ │ │ │ ├── EntityAnnotationCriteriaAbsentPresenter.java │ │ │ │ ├── EntityAnnotationCriteriaAbsentPresenterFactory.java │ │ │ │ ├── EntityAnnotationCriteriaPresenter.java │ │ │ │ ├── EntityAnnotationCriteriaPresenterFactory.java │ │ │ │ ├── EntityAnnotationMatchesAtMostOneCriteriaPresenter.java │ │ │ │ ├── EntityAnnotationMatchesAtMostOneCriteriaPresenterFactory.java │ │ │ │ ├── EntityAnnotationValuesAreNotDisjointCriteriaPresenter.java │ │ │ │ ├── EntityAnnotationValuesAreNotDisjointCriteriaPresenterFactory.java │ │ │ │ ├── EntityCriteriaPresenter.java │ │ │ │ ├── EntityHasAtMostOneRelationshipCriteriaPresenter.java │ │ │ │ ├── EntityHasMoreThanOneRelationshipCriteriaPresenterFactory.java │ │ │ │ ├── EntityIsCriteriaPresenter.java │ │ │ │ ├── EntityIsCriteriaPresenterFactory.java │ │ │ │ ├── EntityIsCriteriaView.java │ │ │ │ ├── EntityIsCriteriaViewImpl.java │ │ │ │ ├── EntityIsCriteriaViewImpl.ui.xml │ │ │ │ ├── EntityRelationshipAbsentPresenter.java │ │ │ │ ├── EntityRelationshipAbsentPresenterFactory.java │ │ │ │ ├── EntityRelationshipCriteriaPresenter.java │ │ │ │ ├── EntityRelationshipCriteriaView.java │ │ │ │ ├── EntityRelationshipCriteriaViewImpl.java │ │ │ │ ├── EntityRelationshipCriteriaViewImpl.ui.xml │ │ │ │ ├── EntityRelationshipPresenterFactory.java │ │ │ │ ├── EntityTypeCriteriaPresenter.java │ │ │ │ ├── EntityTypeCriteriaPresenterFactory.java │ │ │ │ ├── EntityTypeCriteriaView.java │ │ │ │ ├── EntityTypeCriteriaViewImpl.java │ │ │ │ ├── EntityTypeCriteriaViewImpl.ui.xml │ │ │ │ ├── InstanceOfCriteriaPresenter.java │ │ │ │ ├── InstanceOfCriteriaPresenterFactory.java │ │ │ │ ├── IriEqualsCriteriaFactoryPresenter.java │ │ │ │ ├── IriEqualsCriteriaPresenter.java │ │ │ │ ├── IriEqualsView.java │ │ │ │ ├── IriEqualsViewImpl.java │ │ │ │ ├── IriEqualsViewImpl.ui.xml │ │ │ │ ├── IriHasAnnotationsCriteriaPresenter.java │ │ │ │ ├── IriHasAnnotationsCriteriaPresenterFactory.java │ │ │ │ ├── IsDeprecatedCriteriaPresenter.java │ │ │ │ ├── IsDeprecatedCriteriaPresenterFactory.java │ │ │ │ ├── IsNotBuiltInEntityPresenter.java │ │ │ │ ├── IsNotBuiltInEntityPresenterFactory.java │ │ │ │ ├── IsNotDeprecatedCriteriaPresenter.java │ │ │ │ ├── IsNotDeprecatedCriteriaPresenterFactory.java │ │ │ │ ├── LangMatchesCriteriaPresenter.java │ │ │ │ ├── LangTagIsEmptyCriteriaPresenter.java │ │ │ │ ├── LangTagIsEmptyCriteriaPresenterFactory.java │ │ │ │ ├── LangTagMatchesCriteriaPresenterFactory.java │ │ │ │ ├── LangTagMatchesCriteriaView.java │ │ │ │ ├── LangTagMatchesCriteriaViewImpl.java │ │ │ │ ├── LangTagMatchesCriteriaViewImpl.ui.xml │ │ │ │ ├── LexicalValueIsNotInLiteralLexcialSpaceCriteriaPresenter.java │ │ │ │ ├── LexicalValueIsNotInLiteralLexcialSpaceCriteriaPresenterFactory.java │ │ │ │ ├── LiteralCriteriaListPresenter.java │ │ │ │ ├── MatchResult.java │ │ │ │ ├── MatchResult.ui.xml │ │ │ │ ├── NonUniqueLangTagsCriteriaPresenter.java │ │ │ │ ├── NonUniqueLangTagsCriteriaPresenterFactory.java │ │ │ │ ├── NumericValueCriteriaPresenter.java │ │ │ │ ├── NumericValueCriteriaPresenterFactory.java │ │ │ │ ├── NumericValueCriteriaView.java │ │ │ │ ├── NumericValueCriteriaViewImpl.java │ │ │ │ ├── NumericValueCriteriaViewImpl.ui.xml │ │ │ │ ├── QueryPortletPresenter.java │ │ │ │ ├── QueryPortletView.java │ │ │ │ ├── QueryPortletViewImpl.java │ │ │ │ ├── QueryPortletViewImpl.ui.xml │ │ │ │ ├── RelationValueThatIsEqualToView.java │ │ │ │ ├── RelationValueThatIsEqualToViewImpl.java │ │ │ │ ├── RelationValueThatIsEqualToViewImpl.ui.xml │ │ │ │ ├── RelationshipValueCriteriaListPresenter.java │ │ │ │ ├── RelationshipValueCriteriaPresenter.java │ │ │ │ ├── RelationshipValueCriteriaPresenterFactory.java │ │ │ │ ├── RelationshipValueCriteriaView.java │ │ │ │ ├── RelationshipValueCriteriaViewImpl.java │ │ │ │ ├── RelationshipValueCriteriaViewImpl.ui.xml │ │ │ │ ├── RelationshipValueMatchType.java │ │ │ │ ├── RelationshipValueThatIsEqualToCriteriaPresenter.java │ │ │ │ ├── RootCriteriaPresenter.java │ │ │ │ ├── RootCriteriaPresenterFactory.java │ │ │ │ ├── SelectableCriteriaTypePresenter.java │ │ │ │ ├── SelectableCriteriaTypeView.java │ │ │ │ ├── SelectableCriteriaTypeViewImpl.java │ │ │ │ ├── SelectableCriteriaTypeViewImpl.ui.xml │ │ │ │ ├── SelectableLiteralCriteriaPresenter.java │ │ │ │ ├── SimpleStringCriteriaView.java │ │ │ │ ├── SimpleStringCriteriaViewImpl.java │ │ │ │ ├── SimpleStringCriteriaViewImpl.ui.xml │ │ │ │ ├── StringContainsCriteriaPresenterFactory.java │ │ │ │ ├── StringContainsPresenter.java │ │ │ │ ├── StringContainsRepeatedSpacesCriteriaPresenter.java │ │ │ │ ├── StringContainsRepeatedSpacesCriteriaPresenterFactory.java │ │ │ │ ├── StringDoesNotMatchRegexCriteriaPresenter.java │ │ │ │ ├── StringDoesNotMatchRegexCriteriaPresenterFactory.java │ │ │ │ ├── StringEndsWithCriteriaPresenter.java │ │ │ │ ├── StringEndsWithCriteriaPresenterFactory.java │ │ │ │ ├── StringEqualsCriteriaPresenter.java │ │ │ │ ├── StringEqualsCriteriaPresenterFactory.java │ │ │ │ ├── StringHasUntrimmedSpaceCriteriaPresenter.java │ │ │ │ ├── StringHasUntrimmedSpaceCriteriaPresenterFactory.java │ │ │ │ ├── StringMatchesRegexCriteriaPresenter.java │ │ │ │ ├── StringMatchesRegexCriteriaPresenterFactory.java │ │ │ │ ├── StringStartsWithCriteriaPresenter.java │ │ │ │ ├── StringStartsWithCriteriaPresenterFactory.java │ │ │ │ ├── SubClassOfCriteriaPresenter.java │ │ │ │ └── SubClassOfCriteriaPresenterFactory.java │ │ │ ├── merge │ │ │ │ ├── ApplyChangesDialogController.java │ │ │ │ ├── ApplyChangesView.java │ │ │ │ ├── ApplyChangesViewImpl.java │ │ │ │ ├── ApplyChangesViewImpl.ui.xml │ │ │ │ ├── MergeClientBundle.java │ │ │ │ ├── MergeUploadedProjectWorkflow.java │ │ │ │ ├── UploadAndMergeProjectWorkflow.java │ │ │ │ └── merge.css │ │ │ ├── merge_add │ │ │ │ ├── EnterOntologyIRIDialogController.java │ │ │ │ ├── EnterOntologyIRIView.java │ │ │ │ ├── EnterOntologyIRIViewImpl.java │ │ │ │ ├── EnterOntologyIRIViewImpl.ui.xml │ │ │ │ ├── ExistingOntologyMergeProjectWorkflow.java │ │ │ │ ├── MergeAddClientBundle.java │ │ │ │ ├── NewOntologyMergeProjectWorkflow.java │ │ │ │ ├── SelectExistingOntologyDialogController.java │ │ │ │ ├── SelectExistingOntologyView.java │ │ │ │ ├── SelectExistingOntologyViewImpl.java │ │ │ │ ├── SelectExistingOntologyViewImpl.ui.xml │ │ │ │ ├── SelectOntologiesForMergeDialogController.java │ │ │ │ ├── SelectOntologiesForMergeView.java │ │ │ │ ├── SelectOntologiesForMergeViewImpl.java │ │ │ │ ├── SelectOntologiesForMergeViewImpl.ui.xml │ │ │ │ ├── SelectOptionDialogController.java │ │ │ │ ├── SelectOptionForMergeAdditionsWorkflow.java │ │ │ │ ├── SelectOptionView.java │ │ │ │ ├── SelectOptionViewImpl.java │ │ │ │ ├── SelectOptionViewImpl.ui.xml │ │ │ │ ├── UploadAndMergeAdditionsProjectsWorkflow.java │ │ │ │ └── merge_add.css │ │ │ ├── obo │ │ │ │ ├── AbstractOBOTermPortletPresenter.java │ │ │ │ ├── OBORelationshipEditorImpl.java │ │ │ │ ├── OBORelationshipEditorImpl.ui.xml │ │ │ │ ├── OBOTermCrossProductEditor.java │ │ │ │ ├── OBOTermCrossProductEditorImpl.java │ │ │ │ ├── OBOTermCrossProductEditorImpl.ui.xml │ │ │ │ ├── OBOTermCrossProductPortletPresenter.java │ │ │ │ ├── OBOTermDefinitionEditor.java │ │ │ │ ├── OBOTermDefinitionEditorImpl.java │ │ │ │ ├── OBOTermDefinitionEditorImpl.ui.xml │ │ │ │ ├── OBOTermDefinitionPortletPresenter.java │ │ │ │ ├── OBOTermEditor.java │ │ │ │ ├── OBOTermEditorApplyChangesAsyncCallback.java │ │ │ │ ├── OBOTermIdEditor.java │ │ │ │ ├── OBOTermIdEditorImpl.java │ │ │ │ ├── OBOTermIdEditorImpl.ui.xml │ │ │ │ ├── OBOTermIdEditorPortletPresenter.java │ │ │ │ ├── OBOTermRelationshipEditor.java │ │ │ │ ├── OBOTermRelationshipPortletPresenter.java │ │ │ │ ├── OBOTermSynonymEditor.java │ │ │ │ ├── OBOTermSynonymEditorImpl.java │ │ │ │ ├── OBOTermSynonymEditorImpl.ui.xml │ │ │ │ ├── OBOTermSynonymListEditor.java │ │ │ │ ├── OBOTermSynonymsPortletPresenter.java │ │ │ │ ├── OBOTermXRefsEditorPortletPresenter.java │ │ │ │ ├── OboModule.java │ │ │ │ ├── XRefEditor.java │ │ │ │ ├── XRefEditorImpl.java │ │ │ │ ├── XRefEditorImpl.ui.xml │ │ │ │ ├── XRefEditorLayout.java │ │ │ │ └── XRefListEditor.java │ │ │ ├── ontology │ │ │ │ ├── annotations │ │ │ │ │ ├── AnnotationsView.java │ │ │ │ │ ├── AnnotationsViewImpl.java │ │ │ │ │ ├── AnnotationsViewImpl.ui.xml │ │ │ │ │ └── OntologyAnnotationsPortletPresenter.java │ │ │ │ └── id │ │ │ │ │ ├── OntologyIdPortletPresenter.java │ │ │ │ │ ├── OntologyIdView.java │ │ │ │ │ ├── OntologyIdViewImpl.java │ │ │ │ │ └── OntologyIdViewImpl.ui.xml │ │ │ ├── pagination │ │ │ │ ├── HasPages.java │ │ │ │ ├── HasPagination.java │ │ │ │ ├── PaginatorPresenter.java │ │ │ │ ├── PaginatorView.java │ │ │ │ ├── PaginatorViewImpl.java │ │ │ │ └── PaginatorViewImpl.ui.xml │ │ │ ├── permissions │ │ │ │ ├── LoggedInUserProjectPermissionChecker.java │ │ │ │ ├── LoggedInUserProjectPermissionCheckerImpl.java │ │ │ │ └── PermissionManager.java │ │ │ ├── perspective │ │ │ │ ├── AddViewToPerspectiveEvent.java │ │ │ │ ├── AddViewToPerspectiveHandler.java │ │ │ │ ├── CreateFreshPerspectiveRequestHandler.java │ │ │ │ ├── CreateFreshPerspectiveRequestHandlerImpl.java │ │ │ │ ├── EmptyPerspectivePresenter.java │ │ │ │ ├── EmptyPerspectivePresenterFactory.java │ │ │ │ ├── EmptyPerspectiveView.java │ │ │ │ ├── EmptyPerspectiveViewImpl.java │ │ │ │ ├── EmptyPerspectiveViewImpl.ui.xml │ │ │ │ ├── Perspective.java │ │ │ │ ├── PerspectiveDetailsDefaultValueProvider.java │ │ │ │ ├── PerspectiveDetailsListPresenter.java │ │ │ │ ├── PerspectiveDetailsPresenter.java │ │ │ │ ├── PerspectiveDetailsView.java │ │ │ │ ├── PerspectiveDetailsViewImpl.java │ │ │ │ ├── PerspectiveDetailsViewImpl.ui.xml │ │ │ │ ├── PerspectiveFactory.java │ │ │ │ ├── PerspectiveImpl.java │ │ │ │ ├── PerspectiveLink.java │ │ │ │ ├── PerspectiveLinkFactory.java │ │ │ │ ├── PerspectiveLinkImpl.java │ │ │ │ ├── PerspectiveLinkImpl.ui.xml │ │ │ │ ├── PerspectiveManagerAdminSettingsViewImpl.java │ │ │ │ ├── PerspectiveManagerAdminSettingsViewImpl.ui.xml │ │ │ │ ├── PerspectivePresenter.java │ │ │ │ ├── PerspectiveSwitcherPresenter.java │ │ │ │ ├── PerspectiveSwitcherView.java │ │ │ │ ├── PerspectiveSwitcherViewImpl.java │ │ │ │ ├── PerspectiveSwitcherViewImpl.ui.xml │ │ │ │ ├── PerspectiveView.java │ │ │ │ ├── PerspectiveViewImpl.java │ │ │ │ ├── PerspectiveViewImpl.ui.xml │ │ │ │ ├── PerspectivesManagerActivity.java │ │ │ │ ├── PerspectivesManagerAdminSettingsView.java │ │ │ │ ├── PerspectivesManagerPlace.java │ │ │ │ ├── PerspectivesManagerPlaceTokenizer.java │ │ │ │ ├── PerspectivesManagerPresenter.java │ │ │ │ ├── PerspectivesManagerService.java │ │ │ │ ├── PerspectivesManagerView.java │ │ │ │ ├── PerspectivesManagerViewImpl.java │ │ │ │ ├── PerspectivesManagerViewImpl.ui.xml │ │ │ │ ├── PortletWidgetMapper.java │ │ │ │ ├── ProjectPerspectivesService.java │ │ │ │ ├── ProjectPerspectivesServiceImpl.java │ │ │ │ ├── ResetPerspectiveEvent.java │ │ │ │ └── ResetPerspectiveHandler.java │ │ │ ├── place │ │ │ │ ├── AdminActivity.java │ │ │ │ ├── CollectionViewActivity.java │ │ │ │ ├── DefaultPlace.java │ │ │ │ ├── LanguageSettingsActivity.java │ │ │ │ ├── LoginActivity.java │ │ │ │ ├── PlaceHistoryHandlerProvider.java │ │ │ │ ├── PlaceManager.java │ │ │ │ ├── ProjectListActivity.java │ │ │ │ ├── ProjectPrefixDeclarationsActivity.java │ │ │ │ ├── ProjectViewActivity.java │ │ │ │ ├── SignUpActivity.java │ │ │ │ ├── WebProtegeActivityManager.java │ │ │ │ ├── WebProtegeActivityMapper.java │ │ │ │ ├── WebProtegePlaceHistoryMapper.java │ │ │ │ ├── WindowTitleUpdater.java │ │ │ │ └── WindowTitleUpdaterImpl.java │ │ │ ├── portlet │ │ │ │ ├── AbstractWebProtegePortletPresenter.java │ │ │ │ ├── CouldNotFindPortletWidget.java │ │ │ │ ├── CouldNotFindPortletWidget.ui.xml │ │ │ │ ├── HasNodeProperties.java │ │ │ │ ├── HasPortletActions.java │ │ │ │ ├── PortletAction.java │ │ │ │ ├── PortletActionHandler.java │ │ │ │ ├── PortletChooserPresenter.java │ │ │ │ ├── PortletChooserView.java │ │ │ │ ├── PortletChooserViewImpl.java │ │ │ │ ├── PortletChooserViewImpl.ui.xml │ │ │ │ ├── PortletContentHolder.java │ │ │ │ ├── PortletDescriptor.java │ │ │ │ ├── PortletFactory.java │ │ │ │ ├── PortletUi.java │ │ │ │ ├── PortletUiImpl.java │ │ │ │ ├── PortletUiImpl.ui.xml │ │ │ │ ├── WebProtegePortletComponents.java │ │ │ │ └── WebProtegePortletPresenter.java │ │ │ ├── primitive │ │ │ │ ├── AugmentedFreshEntitiesSuggestStrategy.java │ │ │ │ ├── AuxiliaryTypeHandler.java │ │ │ │ ├── DefaultLanguageEditor.java │ │ │ │ ├── EntityDataLookupHandler.java │ │ │ │ ├── EntityDataLookupHandlerImpl.java │ │ │ │ ├── EntityLinkMode.java │ │ │ │ ├── EntitySuggestOracleSuggestLimit.java │ │ │ │ ├── EntitySuggestOracleSuggestMode.java │ │ │ │ ├── FreshEntitiesHandler.java │ │ │ │ ├── FreshEntitiesPolicy.java │ │ │ │ ├── FreshEntitySuggestMode.java │ │ │ │ ├── FreshEntitySuggestStrategy.java │ │ │ │ ├── FreshEntitySuggestion.java │ │ │ │ ├── FreshEntitySuggestionSelectedHandler.java │ │ │ │ ├── HasPrimitiveDataPlaceholder.java │ │ │ │ ├── LanguageEditor.java │ │ │ │ ├── MutableFreshEntitiesHandler.java │ │ │ │ ├── NullFreshEntitiesHandler.java │ │ │ │ ├── NullFreshEntitySuggestStrategy.java │ │ │ │ ├── PrimitiveDataEditor.java │ │ │ │ ├── PrimitiveDataEditorClientModule.java │ │ │ │ ├── PrimitiveDataEditorFreshEntityView.java │ │ │ │ ├── PrimitiveDataEditorFreshEntityViewImpl.java │ │ │ │ ├── PrimitiveDataEditorFreshEntityViewImpl.ui.xml │ │ │ │ ├── PrimitiveDataEditorImageView.java │ │ │ │ ├── PrimitiveDataEditorImageViewImpl.java │ │ │ │ ├── PrimitiveDataEditorImageViewImpl.ui.xml │ │ │ │ ├── PrimitiveDataEditorImpl.java │ │ │ │ ├── PrimitiveDataEditorSuggestOracle.java │ │ │ │ ├── PrimitiveDataEditorView.java │ │ │ │ ├── PrimitiveDataEditorViewImpl.java │ │ │ │ ├── PrimitiveDataEditorViewImpl.ui.xml │ │ │ │ ├── PrimitiveDataListEditor.java │ │ │ │ ├── PrimitiveDataParser.java │ │ │ │ ├── PrimitiveDataParserCallback.java │ │ │ │ ├── PrimitiveDataParserImpl.java │ │ │ │ ├── PrimitiveDataParsingContext.java │ │ │ │ └── SimpleFreshEntitySuggestStrategy.java │ │ │ ├── progress │ │ │ │ ├── BusyView.java │ │ │ │ ├── BusyViewImpl.java │ │ │ │ ├── BusyViewImpl.ui.xml │ │ │ │ ├── HasBusy.java │ │ │ │ ├── ProgressBarView.java │ │ │ │ ├── ProgressBarViewImpl.java │ │ │ │ ├── ProgressBarViewImpl.ui.xml │ │ │ │ └── ProgressMonitor.java │ │ │ ├── project │ │ │ │ ├── ActiveProjectChangedEvent.java │ │ │ │ ├── ActiveProjectChangedHandler.java │ │ │ │ ├── ActiveProjectManager.java │ │ │ │ ├── ActiveProjectManagerImpl.java │ │ │ │ ├── CreateNewProjectPresenter.java │ │ │ │ ├── CreateNewProjectView.java │ │ │ │ ├── CreateNewProjectViewImpl.java │ │ │ │ ├── CreateNewProjectViewImpl.ui.xml │ │ │ │ ├── EditProjectFormsUiHandler.java │ │ │ │ ├── EditProjectPrefixDeclarationsHandler.java │ │ │ │ ├── EditProjectPrefixDeclarationsHandlerImpl.java │ │ │ │ ├── NewProjectInfo.java │ │ │ │ ├── PrefixDeclarationEditor.java │ │ │ │ ├── PrefixDeclarationEditor.ui.xml │ │ │ │ ├── ProjectDetailsListBoxCellRenderer.java │ │ │ │ ├── ProjectDetailsView.java │ │ │ │ ├── ProjectDetailsViewImpl.java │ │ │ │ ├── ProjectDetailsViewImpl.ui.xml │ │ │ │ ├── ProjectMenuPresenter.java │ │ │ │ ├── ProjectMenuView.java │ │ │ │ ├── ProjectMenuViewImpl.java │ │ │ │ ├── ProjectMenuViewImpl.ui.xml │ │ │ │ ├── ProjectPrefixDeclarationsPresenter.java │ │ │ │ ├── ProjectPrefixDeclarationsView.java │ │ │ │ ├── ProjectPrefixDeclarationsViewImpl.java │ │ │ │ ├── ProjectPrefixDeclarationsViewImpl.ui.xml │ │ │ │ ├── ProjectPresenter.java │ │ │ │ ├── ProjectView.java │ │ │ │ ├── ProjectViewImpl.java │ │ │ │ ├── ProjectViewImpl.ui.xml │ │ │ │ ├── ShowNotificationSettingsHandler.java │ │ │ │ ├── ShowProjectDetailsHandler.java │ │ │ │ ├── ShowProjectDetailsHandlerImpl.java │ │ │ │ ├── UploadAndMergeAdditionsHandler.java │ │ │ │ ├── UploadAndMergeAdditionsHandlerImpl.java │ │ │ │ ├── UploadAndMergeHandler.java │ │ │ │ └── UploadAndMergeHandlerImpl.java │ │ │ ├── projectfeed │ │ │ │ ├── CommentPostedEventView.java │ │ │ │ ├── CommentPostedEventView.ui.xml │ │ │ │ ├── ProjectChangeEventView.java │ │ │ │ ├── ProjectChangeEventView.ui.xml │ │ │ │ ├── ProjectFeedItemDisplay.java │ │ │ │ ├── ProjectFeedPortletPresenter.java │ │ │ │ ├── ProjectFeedPresenter.java │ │ │ │ ├── ProjectFeedView.java │ │ │ │ ├── ProjectFeedView.ui.xml │ │ │ │ ├── UserStartedViewingProjectEventView.java │ │ │ │ ├── UserStartedViewingProjectEventView.ui.xml │ │ │ │ ├── UserStoppedViewingProjectEventView.java │ │ │ │ └── UserStoppedViewingProjectEventView.ui.xml │ │ │ ├── projectlist │ │ │ │ ├── AvailableProjectPresenter.java │ │ │ │ ├── AvailableProjectView.java │ │ │ │ ├── AvailableProjectViewImpl.java │ │ │ │ ├── AvailableProjectViewImpl.ui.xml │ │ │ │ ├── AvailableProjectsListView.java │ │ │ │ ├── AvailableProjectsListViewImpl.java │ │ │ │ ├── AvailableProjectsListViewImpl.ui.xml │ │ │ │ ├── ProjectListResources.java │ │ │ │ └── WebProtegeDataGrid.css │ │ │ ├── projectmanager │ │ │ │ ├── AvailableProjectFilter.java │ │ │ │ ├── AvailableProjectOrFilter.java │ │ │ │ ├── AvailableProjectSortingKey.java │ │ │ │ ├── AvailableProjectsCache.java │ │ │ │ ├── CreateProjectRequestHandler.java │ │ │ │ ├── CreateProjectRequestHandlerImpl.java │ │ │ │ ├── DownloadProjectRequestHandler.java │ │ │ │ ├── DownloadProjectRequestHandlerImpl.java │ │ │ │ ├── HasCreateProjectRequestHandler.java │ │ │ │ ├── HasDownloadProjectRequestHandler.java │ │ │ │ ├── HasLoadProjectRequestHandler.java │ │ │ │ ├── HasTrashManagerRequestHandler.java │ │ │ │ ├── HasViewCategoryChangedHandler.java │ │ │ │ ├── LoadProjectInNewWindowRequestHandler.java │ │ │ │ ├── LoadProjectInNewWindowRequestHandlerImpl.java │ │ │ │ ├── LoadProjectRequestHandler.java │ │ │ │ ├── LoadProjectRequestHandlerImpl.java │ │ │ │ ├── ProjectCreatedEvent.java │ │ │ │ ├── ProjectCreatedHandler.java │ │ │ │ ├── ProjectManagerPresenter.java │ │ │ │ ├── ProjectManagerView.java │ │ │ │ ├── ProjectManagerViewFilter.java │ │ │ │ ├── ProjectManagerViewImpl.java │ │ │ │ ├── ProjectManagerViewImpl.ui.xml │ │ │ │ ├── TrashManagerRequestHandler.java │ │ │ │ ├── TrashManagerRequestHandlerImpl.java │ │ │ │ └── ViewFilterChangedHandler.java │ │ │ ├── projectsettings │ │ │ │ ├── GeneralSettingsView.java │ │ │ │ ├── GeneralSettingsViewImpl.java │ │ │ │ ├── GeneralSettingsViewImpl.ui.xml │ │ │ │ ├── ProjectSettingsActivity.java │ │ │ │ ├── ProjectSettingsDownloader.java │ │ │ │ ├── ProjectSettingsHeaderSectionPresenter.java │ │ │ │ ├── ProjectSettingsHeaderSectionView.java │ │ │ │ ├── ProjectSettingsHeaderSectionViewImpl.java │ │ │ │ ├── ProjectSettingsHeaderSectionViewImpl.ui.xml │ │ │ │ ├── ProjectSettingsImporter.java │ │ │ │ ├── ProjectSettingsImporterView.java │ │ │ │ ├── ProjectSettingsImporterViewImpl.java │ │ │ │ ├── ProjectSettingsPresenter.java │ │ │ │ ├── ProjectSettingsService.java │ │ │ │ ├── SlackWebhookSettingsView.java │ │ │ │ ├── SlackWebhookSettingsViewImpl.java │ │ │ │ ├── SlackWebhookSettingsViewImpl.ui.xml │ │ │ │ ├── WebhookSettingsView.java │ │ │ │ ├── WebhookSettingsViewImpl.java │ │ │ │ ├── WebhookSettingsViewImpl.ui.xml │ │ │ │ ├── WebhookView.java │ │ │ │ ├── WebhookViewImpl.java │ │ │ │ └── WebhookViewImpl.ui.xml │ │ │ ├── renderer │ │ │ │ ├── AnnotationPropertyIriRenderer.java │ │ │ │ ├── AnnotationPropertyIriRendererImpl.java │ │ │ │ ├── ClassIriRenderer.java │ │ │ │ ├── ClassIriRendererImpl.java │ │ │ │ ├── OWLEntityDescriptionBrowserPortletPresenter.java │ │ │ │ └── PrimitiveDataIconProvider.java │ │ │ ├── rpc │ │ │ │ └── RpcWhiteList.java │ │ │ ├── search │ │ │ │ ├── EntitySearchFilterListPresenter.java │ │ │ │ ├── EntitySearchFilterPresenter.java │ │ │ │ ├── EntitySearchFilterProvider.java │ │ │ │ ├── EntitySearchFilterService.java │ │ │ │ ├── EntitySearchFilterTokenFieldPresenter.java │ │ │ │ ├── EntitySearchFilterTokenFieldView.java │ │ │ │ ├── EntitySearchFilterTokenFieldViewImpl.java │ │ │ │ ├── EntitySearchFilterTokenFieldViewImpl.ui.xml │ │ │ │ ├── EntitySearchFilterView.java │ │ │ │ ├── EntitySearchFilterViewImpl.java │ │ │ │ ├── EntitySearchFilterViewImpl.ui.xml │ │ │ │ ├── EntitySearchResultPresenter.java │ │ │ │ ├── EntitySearchResultView.java │ │ │ │ ├── EntitySearchResultViewImpl.java │ │ │ │ ├── EntitySearchResultViewImpl.ui.xml │ │ │ │ ├── EntitySearchSettingsActivity.java │ │ │ │ ├── EntitySearchSettingsPresenter.java │ │ │ │ ├── EntitySearchSettingsService.java │ │ │ │ ├── SearchModal.java │ │ │ │ ├── SearchPresenter.java │ │ │ │ ├── SearchResultChosenHandler.java │ │ │ │ ├── SearchResultHandler.java │ │ │ │ ├── SearchResultLanguageRenderer.java │ │ │ │ ├── SearchResultMatchHighlighter.java │ │ │ │ ├── SearchResultMatchPresenter.java │ │ │ │ ├── SearchResultMatchView.java │ │ │ │ ├── SearchResultMatchViewImpl.java │ │ │ │ ├── SearchResultMatchViewImpl.ui.xml │ │ │ │ ├── SearchStringChangedHandler.java │ │ │ │ ├── SearchView.java │ │ │ │ ├── SearchViewImpl.java │ │ │ │ └── SearchViewImpl.ui.xml │ │ │ ├── selection │ │ │ │ ├── EntitySelectionChangedEvent.java │ │ │ │ ├── EntitySelectionChangedHandler.java │ │ │ │ ├── SelectedEntityManager.java │ │ │ │ └── SelectionModel.java │ │ │ ├── settings │ │ │ │ ├── ApplySettingsCallback.java │ │ │ │ ├── ApplySettingsHandler.java │ │ │ │ ├── CancelSettingsHandler.java │ │ │ │ ├── SettingsPresenter.java │ │ │ │ ├── SettingsSectionViewContainer.java │ │ │ │ ├── SettingsSectionViewContainerImpl.java │ │ │ │ ├── SettingsSectionViewContainerImpl.ui.xml │ │ │ │ ├── SettingsView.java │ │ │ │ ├── SettingsViewImpl.java │ │ │ │ └── SettingsViewImpl.ui.xml │ │ │ ├── sharing │ │ │ │ ├── SharingButtonPresenter.java │ │ │ │ ├── SharingSettingEditor.java │ │ │ │ ├── SharingSettingEditorImpl.java │ │ │ │ ├── SharingSettingEditorImpl.ui.xml │ │ │ │ ├── SharingSettingsActivity.java │ │ │ │ ├── SharingSettingsPresenter.java │ │ │ │ ├── SharingSettingsView.java │ │ │ │ ├── SharingSettingsViewImpl.java │ │ │ │ └── SharingSettingsViewImpl.ui.xml │ │ │ ├── shortform │ │ │ │ ├── AnnotationAssertionDictionaryLanguagePresenter.java │ │ │ │ ├── AnnotationAssertionDictionaryLanguagePresenterFactory.java │ │ │ │ ├── AnnotationAssertionDictionaryLanguageView.java │ │ │ │ ├── AnnotationAssertionDictionaryLanguageViewImpl.java │ │ │ │ ├── AnnotationAssertionDictionaryLanguageViewImpl.ui.xml │ │ │ │ ├── AnnotationAssertionPathDictionaryLanguagePresenter.java │ │ │ │ ├── AnnotationAssertionPathDictionaryLanguagePresenterFactory.java │ │ │ │ ├── AnnotationAssertionPathDictionaryLanguageView.java │ │ │ │ ├── AnnotationAssertionPathDictionaryLanguageViewImpl.java │ │ │ │ ├── AnnotationAssertionPathDictionaryLanguageViewImpl.ui.xml │ │ │ │ ├── DictionaryLanguageBlankView.java │ │ │ │ ├── DictionaryLanguageBlankViewImpl.java │ │ │ │ ├── DictionaryLanguageBlankViewImpl.ui.xml │ │ │ │ ├── DictionaryLanguagePresenter.java │ │ │ │ ├── DictionaryLanguagePresenterFactory.java │ │ │ │ ├── DictionaryLanguageSelectorPresenter.java │ │ │ │ ├── DictionaryLanguageSelectorView.java │ │ │ │ ├── DictionaryLanguageSelectorViewImpl.java │ │ │ │ ├── DictionaryLanguageSelectorViewImpl.ui.xml │ │ │ │ ├── LocalNameDictionaryLanguagePresenter.java │ │ │ │ ├── LocalNameDictionaryLanguagePresenterFactory.java │ │ │ │ ├── OboIdDictionaryLanguagePresenter.java │ │ │ │ ├── OboIdIDictionaryLanguagePresenterFactory.java │ │ │ │ ├── PrefixedNameDictionaryLanguagePresenter.java │ │ │ │ ├── PrefixedNameDictionaryLanguagePresenterFactory.java │ │ │ │ └── ShortFormModule.java │ │ │ ├── signup │ │ │ │ ├── SignUpPresenter.java │ │ │ │ ├── SignUpView.java │ │ │ │ ├── SignUpViewImpl.java │ │ │ │ ├── SignUpViewImpl.ui.xml │ │ │ │ └── SignupInfo.java │ │ │ ├── tag │ │ │ │ ├── DeleteProjectTagConfirmationPrompt.java │ │ │ │ ├── EditEntityTagsUiAction.java │ │ │ │ ├── EditProjectTagsUIActionHandler.java │ │ │ │ ├── EntityTagCheckBox.java │ │ │ │ ├── EntityTagCheckBoxImpl.java │ │ │ │ ├── EntityTagCheckBoxImpl.ui.xml │ │ │ │ ├── EntityTagsSelectorPresenter.java │ │ │ │ ├── EntityTagsSelectorView.java │ │ │ │ ├── EntityTagsSelectorViewImpl.java │ │ │ │ ├── EntityTagsSelectorViewImpl.ui.xml │ │ │ │ ├── ProjectTagsActivity.java │ │ │ │ ├── ProjectTagsPresenter.java │ │ │ │ ├── ProjectTagsStyleManager.java │ │ │ │ ├── ProjectTagsView.java │ │ │ │ ├── ProjectTagsViewImpl.java │ │ │ │ ├── ProjectTagsViewImpl.ui.xml │ │ │ │ ├── TagCriteriaListPresenter.java │ │ │ │ ├── TagCriteriaListView.java │ │ │ │ ├── TagCriteriaListViewImpl.java │ │ │ │ ├── TagCriteriaListViewImpl.ui.xml │ │ │ │ ├── TagCriteriaPresenter.java │ │ │ │ ├── TagCriteriaView.java │ │ │ │ ├── TagCriteriaViewContainer.java │ │ │ │ ├── TagCriteriaViewContainerImpl.java │ │ │ │ ├── TagCriteriaViewContainerImpl.ui.xml │ │ │ │ ├── TagCriteriaViewImpl.java │ │ │ │ ├── TagCriteriaViewImpl.ui.xml │ │ │ │ ├── TagEditor.java │ │ │ │ ├── TagEditor.ui.xml │ │ │ │ ├── TagListPresenter.java │ │ │ │ ├── TagListView.java │ │ │ │ ├── TagListViewImpl.java │ │ │ │ ├── TagListViewImpl.ui.xml │ │ │ │ ├── TagView.java │ │ │ │ ├── TagViewImpl.java │ │ │ │ ├── TagViewImpl.ui.xml │ │ │ │ └── TagVisibilityPresenter.java │ │ │ ├── tooltip │ │ │ │ ├── Tooltip.java │ │ │ │ └── TooltipOptions.java │ │ │ ├── topbar │ │ │ │ ├── GoToHomeHandler.java │ │ │ │ ├── GoToHomePresenter.java │ │ │ │ ├── GoToHomeView.java │ │ │ │ ├── GoToToHomeViewImpl.java │ │ │ │ ├── GoToToHomeViewImpl.ui.xml │ │ │ │ ├── TopBarPresenter.java │ │ │ │ ├── TopBarView.java │ │ │ │ ├── TopBarViewImpl.java │ │ │ │ └── TopBarViewImpl.ui.xml │ │ │ ├── ui │ │ │ │ ├── Counter.java │ │ │ │ ├── ElementalUtil.java │ │ │ │ ├── LayoutUtil.java │ │ │ │ ├── NumberFormatter.java │ │ │ │ └── ScrollTracker.java │ │ │ ├── upload │ │ │ │ ├── FileUploadResponse.java │ │ │ │ ├── UploadFileDialogController.java │ │ │ │ ├── UploadFileDialogForm.java │ │ │ │ └── UploadFileResultHandler.java │ │ │ ├── usage │ │ │ │ ├── UsageFilterEditorView.java │ │ │ │ ├── UsageFilterEditorViewImpl.java │ │ │ │ ├── UsageFilterEditorViewImpl.ui.xml │ │ │ │ ├── UsagePortletPresenter.java │ │ │ │ ├── UsageView.java │ │ │ │ ├── UsageViewImpl.java │ │ │ │ └── UsageViewImpl.ui.xml │ │ │ ├── user │ │ │ │ ├── ChangeEmailAddressHandler.java │ │ │ │ ├── ChangeEmailAddressHandlerImpl.java │ │ │ │ ├── ChangePasswordHandler.java │ │ │ │ ├── ChangePasswordHandlerImpl.java │ │ │ │ ├── CreateUserAccountExecutor.java │ │ │ │ ├── LoggedInUser.java │ │ │ │ ├── LoggedInUserManager.java │ │ │ │ ├── LoggedInUserPresenter.java │ │ │ │ ├── LoggedInUserProvider.java │ │ │ │ ├── LoggedInUserView.java │ │ │ │ ├── LoggedInUserViewImpl.java │ │ │ │ ├── LoggedInUserViewImpl.ui.xml │ │ │ │ ├── SignOutRequestHandler.java │ │ │ │ ├── SignOutRequestHandlerImpl.java │ │ │ │ ├── UserIcon.java │ │ │ │ ├── UserIconView.java │ │ │ │ ├── UserIconView.ui.xml │ │ │ │ └── UserIdSuggestOracle.java │ │ │ ├── uuid │ │ │ │ ├── UuidV4.java │ │ │ │ └── UuidV4Provider.java │ │ │ ├── verification │ │ │ │ ├── HasHumanVerificationServiceProvider.java │ │ │ │ ├── HumanVerificationHandler.java │ │ │ │ ├── HumanVerificationServiceProvider.java │ │ │ │ ├── HumanVerificationWidget.java │ │ │ │ ├── NullHumanVerificationServiceProvider.java │ │ │ │ └── NullHumanVerificationWidget.java │ │ │ ├── viz │ │ │ │ ├── AnyEdgeCriteriaPresenterFactory.java │ │ │ │ ├── AnyInstanceOfEdgeCriteriaPresenterFactory.java │ │ │ │ ├── AnyRelationshipEdgeCriteriaPresenterFactory.java │ │ │ │ ├── AnySubClassofEdgeCriteriaPresenterFactory.java │ │ │ │ ├── BlankEdgeCriteriaPresenter.java │ │ │ │ ├── CompositeEdgeCriteriaPresenter.java │ │ │ │ ├── CompositeEdgeCriteriaPresenterFactory.java │ │ │ │ ├── EdgeCriteriaListPresenter.java │ │ │ │ ├── EdgeCriteriaPresenter.java │ │ │ │ ├── EntityGraphFilterListItemView.java │ │ │ │ ├── EntityGraphFilterListItemViewImpl.java │ │ │ │ ├── EntityGraphFilterListItemViewImpl.ui.xml │ │ │ │ ├── EntityGraphFilterListPresenter.java │ │ │ │ ├── EntityGraphFilterListView.java │ │ │ │ ├── EntityGraphFilterListViewImpl.java │ │ │ │ ├── EntityGraphFilterListViewImpl.ui.xml │ │ │ │ ├── EntityGraphFilterPresenter.java │ │ │ │ ├── EntityGraphFilterTokenPresenter.java │ │ │ │ ├── EntityGraphFilterTokenView.java │ │ │ │ ├── EntityGraphFilterTokenViewImpl.java │ │ │ │ ├── EntityGraphFilterTokenViewImpl.ui.xml │ │ │ │ ├── EntityGraphFilterView.java │ │ │ │ ├── EntityGraphFilterViewImpl.java │ │ │ │ ├── EntityGraphFilterViewImpl.ui.xml │ │ │ │ ├── EntityGraphPresenter.java │ │ │ │ ├── EntityGraphSettingsPresenter.java │ │ │ │ ├── EntityGraphSettingsView.java │ │ │ │ ├── EntityGraphSettingsViewImpl.java │ │ │ │ ├── EntityGraphSettingsViewImpl.ui.xml │ │ │ │ ├── EntityGraphView.java │ │ │ │ ├── EntityGraphViewImpl.java │ │ │ │ ├── EntityGraphViewImpl.ui.xml │ │ │ │ ├── GraphSvgDownloader.java │ │ │ │ ├── HeadNodeMatchesCriteriaPresenter.java │ │ │ │ ├── HeadNodeMatchesCriteriaPresenterFactory.java │ │ │ │ ├── LargeGraphMessagePresenter.java │ │ │ │ ├── LargeGraphMessageView.java │ │ │ │ ├── LargeGraphMessageViewImpl.java │ │ │ │ ├── LargeGraphMessageViewImpl.ui.xml │ │ │ │ ├── NoEdgeCriteriaPresenter.java │ │ │ │ ├── NoEdgeCriteriaPresenterFactory.java │ │ │ │ ├── Promise.java │ │ │ │ ├── RelationshipEdgePropertyEqualsCriteriaPresenter.java │ │ │ │ ├── RelationshipEdgePropertyEqualsCriteriaPresenterFactory.java │ │ │ │ ├── RelationshipEdgePropertyEqualsCriteriaView.java │ │ │ │ ├── RelationshipEdgePropertyEqualsCriteriaViewImpl.java │ │ │ │ ├── RelationshipEdgePropertyEqualsCriteriaViewImpl.ui.xml │ │ │ │ ├── RenderingConsumer.java │ │ │ │ ├── RootEdgeCriteriaPresenterFactory.java │ │ │ │ ├── SelectableLiteralCriteriaPresenterFactory.java │ │ │ │ ├── TailNodeMatchesCriteriaPresenter.java │ │ │ │ ├── TailNodeMatchesCriteriaPresenterFactory.java │ │ │ │ ├── TextDimensions.java │ │ │ │ ├── TextMeasurer.java │ │ │ │ ├── TextMeasurerImpl.java │ │ │ │ ├── TextMeasurerImpl.ui.xml │ │ │ │ ├── TransformCoordinates.java │ │ │ │ ├── Viz.java │ │ │ │ ├── VizPanePresenter.java │ │ │ │ ├── VizPortletPresenter.java │ │ │ │ ├── VizPresenter.java │ │ │ │ ├── VizView.java │ │ │ │ ├── VizViewImpl.java │ │ │ │ └── VizViewImpl.ui.xml │ │ │ └── watches │ │ │ │ ├── WatchPresenter.java │ │ │ │ ├── WatchTypeSelection.java │ │ │ │ ├── WatchUiAction.java │ │ │ │ ├── WatchView.java │ │ │ │ ├── WatchViewImpl.java │ │ │ │ ├── WatchViewImpl.ui.xml │ │ │ │ └── WatchedEntitiesPortletPresenter.java │ │ │ └── resources │ │ │ ├── WebProtege.css │ │ │ ├── WebProtegeCellListResources.java │ │ │ ├── WebProtegeClientBundle.java │ │ │ ├── WebProtegeSettingsPage.css │ │ │ ├── Wikipedia_W.svg │ │ │ ├── about.html │ │ │ ├── alert-icon.svg │ │ │ ├── annotation-property.svg │ │ │ ├── ascending.svg │ │ │ ├── bulleted-list.png │ │ │ ├── busy.svg │ │ │ ├── buttons.css │ │ │ ├── changes-icon.svg │ │ │ ├── class.svg │ │ │ ├── collapse-all.svg │ │ │ ├── comment-small-filled.svg │ │ │ ├── create-class.svg │ │ │ ├── create-individual.svg │ │ │ ├── create-property.svg │ │ │ ├── create-thread.svg │ │ │ ├── cross.svg │ │ │ ├── data-property.svg │ │ │ ├── datatype.svg │ │ │ ├── date-time.png │ │ │ ├── datetimepicker.css │ │ │ ├── delete-class.svg │ │ │ ├── delete-individual.svg │ │ │ ├── delete-property.svg │ │ │ ├── deprecated-class.svg │ │ │ ├── descending.svg │ │ │ ├── discussion.css │ │ │ ├── down-arrow.svg │ │ │ ├── download.svg │ │ │ ├── editor-icon.svg │ │ │ ├── entitynode.css │ │ │ ├── expand-all.svg │ │ │ ├── eye-down.svg │ │ │ ├── eye.svg │ │ │ ├── feedback.html │ │ │ ├── filter.svg │ │ │ ├── funnel.svg │ │ │ ├── glyphs.css │ │ │ ├── goto.svg │ │ │ ├── help.svg │ │ │ ├── hierarchy-icon.svg │ │ │ ├── home-icon.svg │ │ │ ├── individual.svg │ │ │ ├── iri.svg │ │ │ ├── language-codes.txt │ │ │ ├── link.svg │ │ │ ├── literal.svg │ │ │ ├── login.css │ │ │ ├── menu.css │ │ │ ├── message-icon.svg │ │ │ ├── modal.css │ │ │ ├── move-to-child.svg │ │ │ ├── move-to-parent.svg │ │ │ ├── move-to-sibling.svg │ │ │ ├── number.svg │ │ │ ├── numbered-list.png │ │ │ ├── object-property.svg │ │ │ ├── plus.svg │ │ │ ├── primitive-data.css │ │ │ ├── progress.gif │ │ │ ├── project-list.css │ │ │ ├── property.svg │ │ │ ├── protege-blender-monochrome.png │ │ │ ├── protege-blender.svg │ │ │ ├── protege-cloud.png │ │ │ ├── question-icon.svg │ │ │ ├── refresh-icon.svg │ │ │ ├── search-icon.svg │ │ │ ├── settings.svg │ │ │ ├── sync-selection.svg │ │ │ ├── tags.css │ │ │ ├── toolbar.css │ │ │ ├── topbar.css │ │ │ ├── up-arrow.svg │ │ │ ├── value-list.css │ │ │ ├── viz-icon.svg │ │ │ └── webprotege-cell-list.css │ ├── module-dev.gwt.xml │ ├── module.gwt.xml │ ├── resources │ │ └── edu │ │ │ └── stanford │ │ │ └── bmir │ │ │ └── protege │ │ │ └── web │ │ │ └── client │ │ │ ├── Messages_pt.properties │ │ │ ├── Messages_sl.properties │ │ │ └── VersionInfo.properties │ └── super │ │ └── javax │ │ └── annotation │ │ └── processing │ │ └── Generated.java │ └── test │ └── java │ └── edu │ └── stanford │ └── bmir │ └── protege │ └── web │ ├── PrimitiveDataParserImpl_EntityParsing_TestCase.java │ ├── PrimitiveDataParserImpl_LiteralParsing_TestCase.java │ └── client │ ├── GwtTest_DataFactory.java │ ├── GwtTest_UserInSession.json │ ├── TestResources.java │ ├── app │ ├── GwtTest_ClientObjectReader.java │ └── GwtTest_UserInSessionDecoder.java │ ├── auth │ └── AuthenticatedActionExecutor_TestCase.java │ ├── dispatch │ ├── DispatchServiceCallbackWithProgress_TestCase.java │ └── DispatchServiceCallback_TestCase.java │ ├── form │ ├── AnnotationPropertyValueAxiomParser_TestCase.java │ ├── FormFieldPresenter_TestCase.java │ ├── FormLanguageFilterStash_TestCase.java │ ├── GridCellPresenter_TestCase.java │ ├── GridColumnVisibilityManager_TestCase.java │ ├── ParentClassAxiomParser_TestCase.java │ └── input │ │ └── CheckBoxPresenter_TestCase.java │ ├── lang │ └── DictionaryLanguageIO_TestCase.java │ ├── pagination │ └── PaginatorPresenter_TestCase.java │ ├── place │ ├── CollectionViewActivity_TestCase.java │ ├── LoginActivity_TestCase.java │ ├── ProjectPrefixDeclarationsActivity_TestCase.java │ └── ProjectViewActivity_TestCase.java │ ├── primitive │ └── GwtTest_PrimitiveDataSuggestOracle.java │ ├── selection │ └── SelectionModel_TestCase.java │ ├── sharing │ └── SharingSettingsActivity_TestCase.java │ └── user │ └── LoggedInUser_TestCase.java ├── webprotege-server-api ├── pom.xml └── src │ ├── main │ └── java │ │ └── edu │ │ └── stanford │ │ └── bmir │ │ └── protege │ │ └── web │ │ └── server │ │ ├── access │ │ ├── AccessManager.java │ │ ├── ApplicationResource.java │ │ ├── ProjectResource.java │ │ ├── Resource.java │ │ ├── Role.java │ │ ├── RoleOracle.java │ │ └── Subject.java │ │ ├── change │ │ ├── AddAxiomChange.java │ │ ├── AddImportChange.java │ │ ├── AddOntologyAnnotationChange.java │ │ ├── AxiomChange.java │ │ ├── ChangeListMinimiser.java │ │ ├── OntologyAnnotationChange.java │ │ ├── OntologyAxiomPair.java │ │ ├── OntologyChange.java │ │ ├── OntologyChangeComparator.java │ │ ├── OntologyChangeList.java │ │ ├── OntologyChangeVisitor.java │ │ ├── OntologyChangeVisitorEx.java │ │ ├── OntologyImportChange.java │ │ ├── RemoveAxiomChange.java │ │ ├── RemoveImportChange.java │ │ └── RemoveOntologyAnnotationChange.java │ │ ├── entity │ │ └── SubjectClosureResolver.java │ │ ├── hierarchy │ │ ├── AnnotationPropertyHierarchyProvider.java │ │ ├── ClassHierarchyProvider.java │ │ ├── DataPropertyHierarchyProvider.java │ │ ├── HasGetAncestors.java │ │ ├── HasHasAncestor.java │ │ ├── HierarchyProvider.java │ │ └── ObjectPropertyHierarchyProvider.java │ │ ├── index │ │ ├── AnnotationAssertionAxiomsBySubjectIndex.java │ │ ├── AnnotationAssertionAxiomsByValueIndex.java │ │ ├── AnnotationAssertionAxiomsIndex.java │ │ ├── AnnotationAxiomsByIriReferenceIndex.java │ │ ├── AnnotationPropertyDomainAxiomsIndex.java │ │ ├── AnnotationPropertyRangeAxiomsIndex.java │ │ ├── AxiomsByEntityReferenceIndex.java │ │ ├── AxiomsByReferenceIndex.java │ │ ├── AxiomsByTypeIndex.java │ │ ├── BuiltInEntitiesIndex.java │ │ ├── BuiltInOwlEntitiesIndex.java │ │ ├── BuiltInOwlEntitiesIndexImpl.java │ │ ├── BuiltInSkosEntitiesIndex.java │ │ ├── BuiltInSkosEntitiesIndexImpl.java │ │ ├── ClassAssertionAxiomsByClassIndex.java │ │ ├── ClassAssertionAxiomsByIndividualIndex.java │ │ ├── ClassFrameAxiomsIndex.java │ │ ├── DataPropertyAssertionAxiomsBySubjectIndex.java │ │ ├── DataPropertyCharacteristicsIndex.java │ │ ├── DataPropertyDomainAxiomsIndex.java │ │ ├── DataPropertyRangeAxiomsIndex.java │ │ ├── DependentIndex.java │ │ ├── DeprecatedEntitiesByEntityIndex.java │ │ ├── DeprecatedEntitiesIndex.java │ │ ├── DifferentIndividualsAxiomsIndex.java │ │ ├── DisjointClassesAxiomsIndex.java │ │ ├── DisjointDataPropertiesAxiomsIndex.java │ │ ├── DisjointObjectPropertiesAxiomsIndex.java │ │ ├── EntitiesInOntologySignatureByIriIndex.java │ │ ├── EntitiesInOntologySignatureIndex.java │ │ ├── EntitiesInProjectSignatureByIriIndex.java │ │ ├── EntitiesInProjectSignatureIndex.java │ │ ├── EquivalentClassesAxiomsIndex.java │ │ ├── EquivalentDataPropertiesAxiomsIndex.java │ │ ├── EquivalentObjectPropertiesAxiomsIndex.java │ │ ├── Index.java │ │ ├── IndividualsByTypeIndex.java │ │ ├── IndividualsIndex.java │ │ ├── IndividualsQueryResult.java │ │ ├── InverseObjectPropertyAxiomsIndex.java │ │ ├── NamedIndividualFrameAxiomIndex.java │ │ ├── ObjectPropertyAssertionAxiomsBySubjectIndex.java │ │ ├── ObjectPropertyCharacteristicsIndex.java │ │ ├── ObjectPropertyDomainAxiomsIndex.java │ │ ├── ObjectPropertyRangeAxiomsIndex.java │ │ ├── OntologyAnnotationsIndex.java │ │ ├── OntologyAnnotationsSignatureIndex.java │ │ ├── OntologyAxiomsIndex.java │ │ ├── OntologyAxiomsSignatureIndex.java │ │ ├── OntologySignatureByTypeIndex.java │ │ ├── OntologySignatureIndex.java │ │ ├── ProjectAnnotationAssertionAxiomsBySubjectIndex.java │ │ ├── ProjectAxiomsSignatureIndex.java │ │ ├── ProjectClassAssertionAxiomsByIndividualIndex.java │ │ ├── ProjectOntologiesIndex.java │ │ ├── ProjectSignatureByTypeIndex.java │ │ ├── ProjectSignatureIndex.java │ │ ├── PropertyAssertionAxiomsBySubjectIndex.java │ │ ├── RootIndex.java │ │ ├── SameIndividualAxiomsIndex.java │ │ ├── SubAnnotationPropertyAxiomsBySubPropertyIndex.java │ │ ├── SubAnnotationPropertyAxiomsBySuperPropertyIndex.java │ │ ├── SubClassOfAxiomsBySubClassIndex.java │ │ ├── SubDataPropertyAxiomsBySubPropertyIndex.java │ │ └── SubObjectPropertyAxiomsBySubPropertyIndex.java │ │ ├── lang │ │ └── ActiveLanguagesManager.java │ │ ├── match │ │ ├── EntityFrameMatcher.java │ │ ├── EntityMatcherFactory.java │ │ ├── HierarchyPositionMatcherFactory.java │ │ ├── Matcher.java │ │ ├── MatchingEngine.java │ │ └── RelationshipMatcherFactory.java │ │ ├── pagination │ │ ├── PageCollector.java │ │ └── Pager.java │ │ ├── project │ │ ├── BuiltInPrefixDeclarations.java │ │ └── ProjectDisposablesManager.java │ │ ├── repository │ │ └── ProjectEntitySearchFiltersManager.java │ │ ├── revision │ │ ├── HasGetRevisionSummary.java │ │ ├── Revision.java │ │ ├── RevisionDetails.java │ │ ├── RevisionManager.java │ │ └── RevisionType.java │ │ ├── search │ │ └── EntitySearchFilterIndexesManager.java │ │ ├── shortform │ │ ├── EntityShortFormMatches.java │ │ ├── LocalNameExtractor.java │ │ ├── MultiLingualDictionary.java │ │ ├── MultiLingualShortFormDictionary.java │ │ ├── MultiLingualShortFormIndex.java │ │ ├── MultilingualDictionaryUpdater.java │ │ ├── SearchString.java │ │ ├── SearchableMultiLingualShortFormDictionary.java │ │ ├── ShortFormMatch.java │ │ ├── ShortFormMatchFunction.java │ │ ├── ShortFormMatchPosition.java │ │ └── ShortFormQuotingUtils.java │ │ ├── tag │ │ ├── EntityTags.java │ │ ├── EntityTagsRepository.java │ │ └── TagRepository.java │ │ └── util │ │ ├── DisposableObjectManager.java │ │ └── IriReplacer.java │ └── test │ └── java │ └── edu │ └── stanford │ └── bmir │ └── protege │ └── web │ └── server │ ├── change │ ├── AddAxiomChange_TestCase.java │ ├── AddImportChange_TestCase.java │ ├── AddOntologyAnnotationChange_TestCase.java │ ├── ChangeListMinimiser_TestCase.java │ ├── OntologyChangeList_TestCase.java │ ├── RemoveAxiomChange_TestCase.java │ ├── RemoveImportChange_TestCase.java │ └── RemoveOntologyAnnotationChange_TestCase.java │ ├── entity │ └── SubjectClosureResolver_TestCase.java │ ├── pagination │ ├── PageCollector_TestCase.java │ └── PagerTestCase.java │ ├── shortform │ ├── LocalNameExtractor_TestCase.java │ └── ShortFormMatchPosition_TestCase.java │ └── tag │ └── EntityTags_TestCase.java ├── webprotege-server-core ├── pom.xml └── src │ ├── main │ ├── java │ │ └── edu │ │ │ └── stanford │ │ │ └── bmir │ │ │ └── protege │ │ │ └── web │ │ │ └── server │ │ │ ├── access │ │ │ ├── AccessManagerCacheKey.java │ │ │ ├── AccessManagerImpl.java │ │ │ ├── RoleAssignment.java │ │ │ └── RoleOracleImpl.java │ │ │ ├── api │ │ │ ├── ApiKeyChecker.java │ │ │ ├── ApiKeyHasher.java │ │ │ ├── ApiKeyIdConverter.java │ │ │ ├── ApiKeyManager.java │ │ │ ├── ApiKeyParser.java │ │ │ ├── ApiKeyRecord.java │ │ │ ├── HashedApiKey.java │ │ │ ├── HashedApiKeyConverter.java │ │ │ ├── IriQuotedSerializer.java │ │ │ ├── UserApiKeyStore.java │ │ │ ├── UserApiKeyStoreImpl.java │ │ │ └── UserApiKeys.java │ │ │ ├── app │ │ │ ├── ApplicationDisposablesManager.java │ │ │ ├── ApplicationHostSupplier.java │ │ │ ├── ApplicationNameSupplier.java │ │ │ ├── ApplicationPathSupplier.java │ │ │ ├── ApplicationPortSupplier.java │ │ │ ├── ApplicationPreferences.java │ │ │ ├── ApplicationPreferencesStore.java │ │ │ ├── ApplicationSchemeSupplier.java │ │ │ ├── ApplicationSettingsChecker.java │ │ │ ├── ApplicationSettingsManager.java │ │ │ ├── DatabaseClientConnection.java │ │ │ ├── DefaultApplicationPreferences.java │ │ │ ├── GetApplicationSettingsActionHandler.java │ │ │ ├── PlaceUrl.java │ │ │ ├── SetApplicationSettingsActionHandler.java │ │ │ ├── UserInSessionFactory.java │ │ │ ├── WebProtegeConfigurationChecker.java │ │ │ └── WebProtegeProperties.java │ │ │ ├── auth │ │ │ ├── AuthenticatedActionHandler.java │ │ │ ├── AuthenticationManager.java │ │ │ ├── AuthenticationManagerImpl.java │ │ │ ├── ChallengeMessageProvider.java │ │ │ ├── ChangePasswordActionHandler.java │ │ │ ├── ChapResponseChecker.java │ │ │ ├── ChapSessionFactory.java │ │ │ ├── ChapSessionIdProvider.java │ │ │ ├── ChapSessionManager.java │ │ │ ├── ChapSessionMaxDuration.java │ │ │ ├── GetChapSessionActionHandler.java │ │ │ └── PerformLoginActionHandler.java │ │ │ ├── axiom │ │ │ ├── AxiomByRenderingComparator.java │ │ │ ├── AxiomBySubjectComparator.java │ │ │ ├── AxiomByTypeComparator.java │ │ │ ├── AxiomComparatorImpl.java │ │ │ ├── AxiomIRISubjectProvider.java │ │ │ ├── AxiomSubjectProvider.java │ │ │ ├── AxiomTypeOrdering.java │ │ │ └── DefaultAxiomTypeOrdering.java │ │ │ ├── bulkop │ │ │ ├── EditAnnotationValuesActionHandler.java │ │ │ ├── EditAnnotationsChangeListGenerator.java │ │ │ ├── MoveClassesChangeListGenerator.java │ │ │ ├── MoveToParentActionHandler.java │ │ │ ├── SetAnnotationValueActionChangeListGenerator.java │ │ │ └── SetAnnotationValueActionHandler.java │ │ │ ├── change │ │ │ ├── AbstractCreateEntitiesChangeListGenerator.java │ │ │ ├── ChangeApplicationResult.java │ │ │ ├── ChangeDescriptionGenerator.java │ │ │ ├── ChangeGenerationContext.java │ │ │ ├── ChangeListGenerator.java │ │ │ ├── CreateAnnotationPropertiesChangeGenerator.java │ │ │ ├── CreateClassesChangeGenerator.java │ │ │ ├── CreateDataPropertiesChangeGenerator.java │ │ │ ├── CreateObjectPropertiesChangeGenerator.java │ │ │ ├── FindAndReplaceIRIPrefixChangeGenerator.java │ │ │ ├── FixedChangeListGenerator.java │ │ │ ├── GetProjectChangesActionHandler.java │ │ │ ├── GetWatchedEntityChangesActionHandler.java │ │ │ ├── HasApplyChanges.java │ │ │ ├── HasGetChangeSubjects.java │ │ │ ├── HasHighLevelEvents.java │ │ │ ├── OntologyChangeRecordTranslator.java │ │ │ ├── OntologyChangeRecordTranslatorImpl.java │ │ │ ├── OntologyChangeSubjectProvider.java │ │ │ ├── OwlOntologyChangeTranslator.java │ │ │ ├── OwlOntologyChangeTranslatorVisitor.java │ │ │ ├── ReverseEngineeredChangeDescriptionGenerator.java │ │ │ ├── ReverseEngineeredChangeDescriptionGeneratorFactory.java │ │ │ ├── RevertRevisionActionHandler.java │ │ │ ├── RevisionReverterChangeListGenerator.java │ │ │ ├── SilentChangeListGenerator.java │ │ │ ├── description │ │ │ │ ├── AbstractAnnotationChange.java │ │ │ │ ├── AbstractCreatedProperties.java │ │ │ │ ├── AbstractMovedProperties.java │ │ │ │ ├── AddedAnnotation.java │ │ │ │ ├── AddedIndividualType.java │ │ │ │ ├── AddedLanguageTag.java │ │ │ │ ├── AddedParent.java │ │ │ │ ├── AddedPropertyDomain.java │ │ │ │ ├── AddedPropertyRange.java │ │ │ │ ├── AddedRelationship.java │ │ │ │ ├── AddedSameAs.java │ │ │ │ ├── ChangedAnnotationProperty.java │ │ │ │ ├── CreatedAnnotationProperties.java │ │ │ │ ├── CreatedClasses.java │ │ │ │ ├── CreatedDataProperties.java │ │ │ │ ├── CreatedIndividuals.java │ │ │ │ ├── CreatedObjectProperties.java │ │ │ │ ├── DeletedEntities.java │ │ │ │ ├── DeprecatedEntities.java │ │ │ │ ├── EditedAnnotationValue.java │ │ │ │ ├── EditedLanguageTag.java │ │ │ │ ├── EditedRelationshipValue.java │ │ │ │ ├── MergedEntities.java │ │ │ │ ├── MovedAnnotationProperties.java │ │ │ │ ├── MovedClasses.java │ │ │ │ ├── MovedDataProperties.java │ │ │ │ ├── MovedObjectProperties.java │ │ │ │ ├── RemovedAnnotation.java │ │ │ │ ├── RemovedIndividualType.java │ │ │ │ ├── RemovedLanguageTag.java │ │ │ │ ├── RemovedParent.java │ │ │ │ ├── RemovedPropertyDomain.java │ │ │ │ ├── RemovedPropertyRange.java │ │ │ │ ├── RemovedRelationship.java │ │ │ │ ├── RemovedSameAs.java │ │ │ │ ├── SetDataPropertyFunctional.java │ │ │ │ ├── SetObjectPropertyCharacteristic.java │ │ │ │ ├── StructuredChangeDescription.java │ │ │ │ ├── SwitchedAnnotationProperty.java │ │ │ │ ├── SwitchedRelationshipProperty.java │ │ │ │ ├── UndeprecatedEntities.java │ │ │ │ ├── UnsetDataPropertyFunctional.java │ │ │ │ └── UnsetObjectPropertyCharacteristic.java │ │ │ └── matcher │ │ │ │ ├── AbstractAxiomMatcher.java │ │ │ │ ├── AnnotationAssertionChangeMatcher.java │ │ │ │ ├── CandidateAxiomEdit.java │ │ │ │ ├── ChangeMatcher.java │ │ │ │ ├── ChangeSummary.java │ │ │ │ ├── ClassAssertionAxiomMatcher.java │ │ │ │ ├── ClassMoveChangeMatcher.java │ │ │ │ ├── EditedAnnotationAssertionChangeMatcher.java │ │ │ │ ├── EntityCreationAxiomSubjectProvider.java │ │ │ │ ├── EntityCreationMatcher.java │ │ │ │ ├── EntityDeletionMatcher.java │ │ │ │ ├── FunctionalDataPropertyAxiomChangeMatcher.java │ │ │ │ ├── MergeEntitiesMatcher.java │ │ │ │ ├── PropertyAssertionAxiomMatcher.java │ │ │ │ ├── PropertyDomainAxiomChangeMatcher.java │ │ │ │ ├── PropertyFiller.java │ │ │ │ ├── PropertyRangeAxiomChangeMatcher.java │ │ │ │ ├── SameIndividualAxiomChangeMatcher.java │ │ │ │ ├── SubClassOfAxiomMatcher.java │ │ │ │ ├── SubClassOfEditChangeMatcher.java │ │ │ │ └── SubClassOfWithFreshEntitiesMatcher.java │ │ │ ├── chgpwd │ │ │ ├── PasswordResetEmailTemplate.java │ │ │ ├── ResetPasswordActionHandler.java │ │ │ └── ResetPasswordMailer.java │ │ │ ├── collection │ │ │ ├── CollectionDetailsRepository.java │ │ │ ├── CollectionIdConverter.java │ │ │ ├── CollectionItemConverter.java │ │ │ ├── CollectionItemDataRepository.java │ │ │ ├── CollectionItemDataRepositoryImpl.java │ │ │ ├── CreateCollectionItemsActionHandler.java │ │ │ └── GetCollectionItemsActionHandler.java │ │ │ ├── color │ │ │ └── ColorConverter.java │ │ │ ├── crud │ │ │ ├── CannotGenerateFreshEntityIdException.java │ │ │ ├── ChangeSetEntityCrudSession.java │ │ │ ├── DeleteEntitiesChangeListGenerator.java │ │ │ ├── DeleteEntityChangeListGenerator.java │ │ │ ├── EmptyChangeSetEntityCrudSession.java │ │ │ ├── EntityCrudContext.java │ │ │ ├── EntityCrudKitHandler.java │ │ │ ├── EntityCrudKitPlugin.java │ │ │ ├── EntityCrudKitPluginManager.java │ │ │ ├── EntityCrudKitRegistry.java │ │ │ ├── EntityIriPrefixCriteriaRewriter.java │ │ │ ├── EntityIriPrefixResolver.java │ │ │ ├── GetEntityCrudKitSettingsActionHandler.java │ │ │ ├── GetEntityCrudKitsActionHandler.java │ │ │ ├── HasPlugins.java │ │ │ ├── IRIParser.java │ │ │ ├── PrefixedNameExpander.java │ │ │ ├── ProjectEntityCrudKitHandlerCache.java │ │ │ ├── SetEntityCrudKitSettingsActionHandler.java │ │ │ ├── obo │ │ │ │ ├── CannotGenerateFreshEntityIdForUserException.java │ │ │ │ ├── OBOIdSession.java │ │ │ │ ├── OBOIdSuffixEntityCrudKitHandler.java │ │ │ │ └── OBOIdSuffixEntityCrudKitPlugin.java │ │ │ ├── persistence │ │ │ │ ├── ProjectEntityCrudKitSettings.java │ │ │ │ └── ProjectEntityCrudKitSettingsRepository.java │ │ │ ├── supplied │ │ │ │ ├── SuppliedNameSuffixEntityCrudKitHandler.java │ │ │ │ └── SuppliedNameSuffixEntityCrudKitPlugin.java │ │ │ └── uuid │ │ │ │ ├── UuidEntityCrudKitHandler.java │ │ │ │ └── UuidEntityCrudKitPlugin.java │ │ │ ├── csv │ │ │ ├── CSVGridParser.java │ │ │ ├── CSVReaderHandler.java │ │ │ ├── GetCSVGridActionHandler.java │ │ │ ├── ImportCSVFileActionHandler.java │ │ │ └── ImportCSVFileChangeListGenerator.java │ │ │ ├── diff │ │ │ ├── DiffElementRenderer.java │ │ │ ├── OntologyDiff2OntologyChanges.java │ │ │ ├── Revision2DiffElementsTranslator.java │ │ │ └── SameSubjectFilter.java │ │ │ ├── dispatch │ │ │ ├── AbstractProjectActionHandler.java │ │ │ ├── AbstractProjectChangeHandler.java │ │ │ ├── ActionHandler.java │ │ │ ├── ActionHandlerNotFoundException.java │ │ │ ├── ActionHandlerRegistry.java │ │ │ ├── ApplicationActionHandler.java │ │ │ ├── DispatchServiceExecutor.java │ │ │ ├── ExecutionContext.java │ │ │ ├── ProjectActionHandler.java │ │ │ ├── RequestContext.java │ │ │ ├── RequestValidationResult.java │ │ │ ├── RequestValidator.java │ │ │ ├── ValidationResult.java │ │ │ ├── actions │ │ │ │ ├── AddAxiomsAction.java │ │ │ │ ├── AddAxiomsResult.java │ │ │ │ ├── DeleteAxiomsAction.java │ │ │ │ ├── DeleteAxiomsResult.java │ │ │ │ ├── GetRevisionAction.java │ │ │ │ ├── GetRevisionResult.java │ │ │ │ ├── GetRevisionsAction.java │ │ │ │ └── GetRevisionsResult.java │ │ │ ├── handlers │ │ │ │ ├── AddAxiomsActionHandler.java │ │ │ │ ├── CreateAnnotationPropertiesActionHandler.java │ │ │ │ ├── CreateClassesActionHandler.java │ │ │ │ ├── CreateDataPropertiesActionHandler.java │ │ │ │ ├── CreateObjectPropertiesActionHandler.java │ │ │ │ ├── DeleteAxiomsActionHandler.java │ │ │ │ ├── DeleteEntitiesActionHandler.java │ │ │ │ ├── GetAvailableProjectsHandler.java │ │ │ │ ├── GetCurrentUserInSessionActionHandler.java │ │ │ │ ├── GetOntologyAnnotationsActionHandler.java │ │ │ │ ├── GetRevisionActionHandler.java │ │ │ │ ├── GetRevisionsActionHandler.java │ │ │ │ ├── GetRootOntologyIdActionHandler.java │ │ │ │ ├── LoadProjectActionHandler.java │ │ │ │ ├── MoveProjectsToTrashActionHandler.java │ │ │ │ ├── RemoveProjectsFromTrashActionHandler.java │ │ │ │ └── SetOntologyAnnotationsActionHandler.java │ │ │ ├── impl │ │ │ │ ├── ActionHandlerRegistryImpl.java │ │ │ │ ├── ApplicationActionHandlerRegistry.java │ │ │ │ ├── DispatchServiceExecutorImpl.java │ │ │ │ └── ProjectActionHandlerRegistry.java │ │ │ └── validators │ │ │ │ ├── ApplicationPermissionValidator.java │ │ │ │ ├── CompositeRequestValidator.java │ │ │ │ ├── NullValidator.java │ │ │ │ ├── ProjectPermissionValidator.java │ │ │ │ ├── UserIsDicussionThreadCreatorValidator.java │ │ │ │ ├── UserIsProjectOwnerValidator.java │ │ │ │ └── UserIsSignedInValidator.java │ │ │ ├── download │ │ │ ├── CreateDownloadTask.java │ │ │ ├── DownloadFormat.java │ │ │ ├── DownloadGeneratorExecutor.java │ │ │ ├── FileTransferExecutor.java │ │ │ ├── ProjectDownloadCache.java │ │ │ ├── ProjectDownloadCacheDirectorySupplier.java │ │ │ └── ProjectDownloader.java │ │ │ ├── entity │ │ │ ├── ChangeEntityIRIActionHandler.java │ │ │ ├── EntityNodeRenderer.java │ │ │ ├── EntityRenamer.java │ │ │ ├── GetDeprecatedEntitiesActionHandler.java │ │ │ ├── LookupEntitiesActionHandler.java │ │ │ ├── MergeEntitiesActionHandler.java │ │ │ └── MergeEntitiesChangeListGenerator.java │ │ │ ├── events │ │ │ ├── BrowserTextChangedEventComputer.java │ │ │ ├── EntityDeprecatedChangedEventTranslator.java │ │ │ ├── EntityTagsChangedEventComputer.java │ │ │ ├── EventLifeTime.java │ │ │ ├── EventManager.java │ │ │ ├── EventTranslator.java │ │ │ ├── EventTranslatorManager.java │ │ │ ├── GetProjectEventsActionHandler.java │ │ │ ├── HasPostEvents.java │ │ │ ├── HighLevelEventGenerator.java │ │ │ ├── OWLAnnotationPropertyHierarchyChangeComputer.java │ │ │ ├── OWLClassHierarchyChangeComputer.java │ │ │ ├── OWLDataPropertyHierarchyChangeComputer.java │ │ │ └── OWLObjectPropertyHierarchyChangeComputer.java │ │ │ ├── filemanager │ │ │ ├── ConfigDirectorySupplier.java │ │ │ ├── ConfigInputStreamSupplier.java │ │ │ ├── CustomizationDirectoryManager.java │ │ │ ├── CustomizationDirectoryManagerFactory.java │ │ │ ├── FileContents.java │ │ │ ├── HasGetFile.java │ │ │ └── StyleCustomizationFileManager.java │ │ │ ├── form │ │ │ ├── AxiomTemplatesParser.java │ │ │ ├── BindingValuesExtractor.java │ │ │ ├── ChoiceDescriptorCache.java │ │ │ ├── ChoiceDescriptorDtoSupplier.java │ │ │ ├── CopyFormDescriptorsFromProjectActionHandler.java │ │ │ ├── DeleteFormActionHandler.java │ │ │ ├── DynamicListChoiceDescriptorDtoSupplier.java │ │ │ ├── EntityFormChangeListGenerator.java │ │ │ ├── EntityFormChangeListGeneratorFactory.java │ │ │ ├── EntityFormManager.java │ │ │ ├── EntityFormRepository.java │ │ │ ├── EntityFormRepositoryImpl.java │ │ │ ├── EntityFormSelectorRepository.java │ │ │ ├── EntityFormSelectorRepositoryImpl.java │ │ │ ├── EntityFormSubjectFactory.java │ │ │ ├── EntityFrameFormDataComponent.java │ │ │ ├── EntityFrameFormDataDtoBuilder.java │ │ │ ├── EntityFrameFormDataModule.java │ │ │ ├── EntityFrameMapper.java │ │ │ ├── EntityFrameMapperFactory.java │ │ │ ├── EntityNameControlValuesBuilder.java │ │ │ ├── FixedListChoiceDescriptorDtoSupplier.java │ │ │ ├── FormControlDataLangTagBasedInclusion.java │ │ │ ├── FormControlValueDeserializer.java │ │ │ ├── FormDataBuilderSession.java │ │ │ ├── FormDataBuilderSessionRenderer.java │ │ │ ├── FormDataRecord.java │ │ │ ├── FormDataRepository.java │ │ │ ├── FormDataUpdateSanityChecker.java │ │ │ ├── FormDescriptorDtoTranslator.java │ │ │ ├── FormDescriptorParseException.java │ │ │ ├── FormDescriptorRecord.java │ │ │ ├── FormFilterMatcherFactory.java │ │ │ ├── FormFrame.java │ │ │ ├── FormFrameBuilder.java │ │ │ ├── FormFrameConverter.java │ │ │ ├── FormFrameFlattener.java │ │ │ ├── FormIdConverter.java │ │ │ ├── FormPageRequestIndex.java │ │ │ ├── FormRegionFilterIndex.java │ │ │ ├── FormRegionFilterPredicateManager.java │ │ │ ├── FormRegionOrderingIndex.java │ │ │ ├── FormSubjectResolver.java │ │ │ ├── FormsCopier.java │ │ │ ├── GetEntityFormActionHandler.java │ │ │ ├── GetEntityFormDescriptorActionHandler.java │ │ │ ├── GetFormDescriptorActionHander.java │ │ │ ├── GetFreshFormIdActionHandler.java │ │ │ ├── GetProjectFormDescriptorsActionHandler.java │ │ │ ├── GridControlValuesBuilder.java │ │ │ ├── ImageControlValuesBuilder.java │ │ │ ├── MultiChoiceControlValueBuilder.java │ │ │ ├── NumberControlValuesBuilder.java │ │ │ ├── PrimitiveFormControlDataDtoRenderer.java │ │ │ ├── PropertyValueFormDataTranslator.java │ │ │ ├── SetEntityFormDescriptorActionHandler.java │ │ │ ├── SetEntityFormsDataActionHandler.java │ │ │ ├── SetFormDataActionHandler.java │ │ │ ├── SetProjectFormDescriptorsActionHandler.java │ │ │ ├── SingleChoiceControlValuesBuilder.java │ │ │ ├── SubFormControlValuesBuilder.java │ │ │ ├── SuppliedNameTemplateResolver.java │ │ │ ├── TextControlValuesBuilder.java │ │ │ ├── UpdateFormDescriptorActionHandler.java │ │ │ ├── data │ │ │ │ ├── EntityNameControlDataDtoComparator.java │ │ │ │ ├── FormControlDataDtoComparator.java │ │ │ │ ├── FormDataDtoComparator.java │ │ │ │ ├── GridCellDataDtoComparator.java │ │ │ │ ├── GridControlDataDtoComparator.java │ │ │ │ ├── GridRowDataDtoComparatorFactory.java │ │ │ │ ├── GridRowDtoByColumnIndexComparator.java │ │ │ │ ├── ImageControlDataDtoComparator.java │ │ │ │ ├── MultiChoiceControlDataDtoComparator.java │ │ │ │ ├── NumberControlDataDtoComparator.java │ │ │ │ ├── SingleChoiceControlDataDtoComparator.java │ │ │ │ └── TextControlDataDtoComparator.java │ │ │ └── processor │ │ │ │ ├── FormControlDataProcessor.java │ │ │ │ ├── FormDataConverter.java │ │ │ │ ├── FormDataProcessor.java │ │ │ │ ├── FormFieldProcessor.java │ │ │ │ ├── GridCellDataProcessor.java │ │ │ │ ├── GridControlDataProcessor.java │ │ │ │ └── GridRowDataProcessor.java │ │ │ ├── frame │ │ │ ├── AbstractUpdateFrameHandler.java │ │ │ ├── CheckManchesterSyntaxFrameActionHandler.java │ │ │ ├── ClassFrameProvider.java │ │ │ ├── ClassFrameProviderImpl.java │ │ │ ├── EmptyEntityFrameFactory.java │ │ │ ├── EntityFrameProvider.java │ │ │ ├── FrameChangeGenerator.java │ │ │ ├── FrameChangeGeneratorFactory.java │ │ │ ├── FrameComponentRendererImpl.java │ │ │ ├── FrameComponentSessionRenderer.java │ │ │ ├── FrameComponentSessionRendererFactory.java │ │ │ ├── FrameUpdate.java │ │ │ ├── GetAnnotationPropertyFrameActionHandler.java │ │ │ ├── GetClassFrameActionHandler.java │ │ │ ├── GetDataPropertyFrameActionHandler.java │ │ │ ├── GetManchesterSyntaxFrameActionHandler.java │ │ │ ├── GetManchesterSyntaxFrameCompletionsActionHandler.java │ │ │ ├── GetNamedIndividualFrameActionHandler.java │ │ │ ├── GetObjectPropertyFrameActionHandler.java │ │ │ ├── GetOntologyFramesActionHandler.java │ │ │ ├── Mode.java │ │ │ ├── PropertyValueComparator.java │ │ │ ├── PropertyValueMinimiser.java │ │ │ ├── PropertyValueSubsumptionChecker.java │ │ │ ├── SetManchesterSyntaxFrameActionHandler.java │ │ │ ├── StructuralPropertyValueSubsumptionChecker.java │ │ │ ├── UpdateAnnotationPropertyFrameActionHandler.java │ │ │ ├── UpdateClassFrameActionHandler.java │ │ │ ├── UpdateDataPropertyFrameHandler.java │ │ │ ├── UpdateNamedIndividualFrameHandler.java │ │ │ ├── UpdateObjectPropertyFrameHandler.java │ │ │ └── translator │ │ │ │ ├── Annotation2PropertyValueTranslator.java │ │ │ │ ├── AnnotationAssertionAxiom2PropertyValuesTranslator.java │ │ │ │ ├── AnnotationPropertyFrameTranslator.java │ │ │ │ ├── Axiom2PropertyValuesTranslator.java │ │ │ │ ├── AxiomPropertyValueTranslator.java │ │ │ │ ├── AxiomTranslatorFactory.java │ │ │ │ ├── Class2ClassFrameTranslator.java │ │ │ │ ├── ClassAssertionAxiom2PropertyValuesTranslator.java │ │ │ │ ├── ClassExpression2PropertyValuesTranslator.java │ │ │ │ ├── ClassFrame2FrameAxiomsTranslator.java │ │ │ │ ├── DataPropertyAssertionAxiom2PropertyValuesTranslator.java │ │ │ │ ├── DataPropertyFrameTranslator.java │ │ │ │ ├── EquivalentClassesAxiom2PropertyValuesTranslator.java │ │ │ │ ├── NamedIndividualFrameTranslator.java │ │ │ │ ├── ObjectPropertyAssertionAxiom2PropertyValuesTranslator.java │ │ │ │ ├── ObjectPropertyFrameTranslator.java │ │ │ │ ├── PropertyValue2AxiomTranslator.java │ │ │ │ ├── PropertyValueTranslator.java │ │ │ │ └── SubClassOfAxiom2PropertyValuesTranslator.java │ │ │ ├── hierarchy │ │ │ ├── AbstractHierarchyProvider.java │ │ │ ├── AbstractOWLPropertyHierarchyProvider.java │ │ │ ├── AnnotationPropertyHierarchyProviderImpl.java │ │ │ ├── ClassClassAncestorChecker.java │ │ │ ├── ClassHierarchyProviderImpl.java │ │ │ ├── ClassHierarchyRoot.java │ │ │ ├── ClassHierarchyRootProvider.java │ │ │ ├── DataPropertyDataPropertyAncestorChecker.java │ │ │ ├── DataPropertyHierarchyProviderImpl.java │ │ │ ├── DataPropertyHierarchyRoot.java │ │ │ ├── DataPropertyHierarchyRootProvider.java │ │ │ ├── GetEntityHierarchyChildrenActionHandler.java │ │ │ ├── GetHierarchyPathsToRootActionHandler.java │ │ │ ├── GetHierarchyRootsActionHandler.java │ │ │ ├── GetHierarchySiblingsActionHandler.java │ │ │ ├── GraphNodeRenderer.java │ │ │ ├── HierarchyChangeComputer.java │ │ │ ├── HierarchyProviderMapper.java │ │ │ ├── MoveEntityChangeListGenerator.java │ │ │ ├── MoveHierarchyNodeActionHandler.java │ │ │ ├── NamedIndividualClassAncestorChecker.java │ │ │ ├── ObjectPropertyHierarchyProviderImpl.java │ │ │ ├── ObjectPropertyHierarchyRoot.java │ │ │ ├── ObjectPropertyHierarchyRootProvider.java │ │ │ └── ObjectPropertyObjectPropertyAncestorChecker.java │ │ │ ├── index │ │ │ ├── IndexModule.java │ │ │ ├── IndexUpdatingService.java │ │ │ └── impl │ │ │ │ ├── AnnotationAssertionAxiomsBySubjectIndexImpl.java │ │ │ │ ├── AnnotationAssertionAxiomsByValueIndexImpl.java │ │ │ │ ├── AnnotationAssertionAxiomsIndexWrapperImpl.java │ │ │ │ ├── AnnotationAxiomsByIriReferenceIndexImpl.java │ │ │ │ ├── AnnotationPropertyDomainAxiomsIndexImpl.java │ │ │ │ ├── AnnotationPropertyRangeAxiomsIndexImpl.java │ │ │ │ ├── AxiomChangeHandler.java │ │ │ │ ├── AxiomMultimapIndex.java │ │ │ │ ├── AxiomsByEntityReferenceIndexImpl.java │ │ │ │ ├── AxiomsByReferenceIndexImpl.java │ │ │ │ ├── AxiomsByTypeIndexImpl.java │ │ │ │ ├── ClassAssertionAxiomsByClassIndexImpl.java │ │ │ │ ├── ClassAssertionAxiomsByIndividualIndexImpl.java │ │ │ │ ├── ClassFrameAxiomsIndexImpl.java │ │ │ │ ├── DataPropertyAssertionAxiomsBySubjectIndexImpl.java │ │ │ │ ├── DataPropertyCharacteristicsIndexImpl.java │ │ │ │ ├── DataPropertyDomainAxiomsIndexImpl.java │ │ │ │ ├── DataPropertyRangeAxiomsIndexImpl.java │ │ │ │ ├── DeprecatedEntitiesByEntityIndexImpl.java │ │ │ │ ├── DifferentIndividualsAxiomsIndexImpl.java │ │ │ │ ├── DisjointClassesAxiomsIndexImpl.java │ │ │ │ ├── DisjointDataPropertiesAxiomsIndexImpl.java │ │ │ │ ├── DisjointObjectPropertiesAxiomsIndexImpl.java │ │ │ │ ├── EntitiesInOntologySignatureByIriIndexImpl.java │ │ │ │ ├── EntitiesInOntologySignatureIndexImpl.java │ │ │ │ ├── EntitiesInProjectSignatureByIriIndexImpl.java │ │ │ │ ├── EntitiesInProjectSignatureIndexImpl.java │ │ │ │ ├── EquivalentClassesAxiomsIndexImpl.java │ │ │ │ ├── EquivalentDataPropertiesAxiomsIndexImpl.java │ │ │ │ ├── EquivalentObjectPropertiesAxiomsIndexImpl.java │ │ │ │ ├── IndexUpdater.java │ │ │ │ ├── IndexedSet.java │ │ │ │ ├── IndexedSetMultimaps.java │ │ │ │ ├── IndividualsByTypeIndexImpl.java │ │ │ │ ├── IndividualsIndexImpl.java │ │ │ │ ├── InverseObjectPropertyAxiomsIndexImpl.java │ │ │ │ ├── Key.java │ │ │ │ ├── KeyValueExtractor.java │ │ │ │ ├── NamedIndividualFrameAxiomsIndexImpl.java │ │ │ │ ├── ObjectPropertyAssertionAxiomsBySubjectIndexImpl.java │ │ │ │ ├── ObjectPropertyCharacteristicsIndexImpl.java │ │ │ │ ├── ObjectPropertyDomainAxiomsIndexImpl.java │ │ │ │ ├── ObjectPropertyRangeAxiomsIndexImpl.java │ │ │ │ ├── OntologyAnnotationsIndexImpl.java │ │ │ │ ├── OntologyAxiomsIndexImpl.java │ │ │ │ ├── OntologySignatureByTypeIndexImpl.java │ │ │ │ ├── OntologySignatureIndexImpl.java │ │ │ │ ├── ProjectClassAssertionAxiomsByIndividualIndexImpl.java │ │ │ │ ├── ProjectOntologiesIndexImpl.java │ │ │ │ ├── ProjectSignatureByTypeIndexImpl.java │ │ │ │ ├── ProjectSignatureIndexImpl.java │ │ │ │ ├── PropertyAssertionAxiomsBySubjectIndexImpl.java │ │ │ │ ├── RootIndexImpl.java │ │ │ │ ├── SameIndividualAxiomsIndexImpl.java │ │ │ │ ├── Stats.java │ │ │ │ ├── SubAnnotationPropertyAxiomsBySubPropertyIndexImpl.java │ │ │ │ ├── SubAnnotationPropertyAxiomsBySuperPropertyIndexImpl.java │ │ │ │ ├── SubClassOfAxiomsBySubClassIndexImpl.java │ │ │ │ ├── SubDataPropertyAxiomsBySubPropertyIndexImpl.java │ │ │ │ ├── SubObjectPropertyAxiomsBySubPropertyIndexImpl.java │ │ │ │ └── UpdatableIndex.java │ │ │ ├── individuals │ │ │ ├── CreateIndividualsChangeListGenerator.java │ │ │ ├── CreateNamedIndividualsActionHandler.java │ │ │ ├── GetIndividualsActionHandler.java │ │ │ ├── GetIndividualsPageContainingIndividualActionHandler.java │ │ │ └── IndividualRendering.java │ │ │ ├── init │ │ │ ├── CheckDataDirectoryIsReadableAndWritable.java │ │ │ ├── CheckMongoDBConnectionTask.java │ │ │ ├── CheckWebProtegeDataDirectoryExists.java │ │ │ ├── ConfigurationTask.java │ │ │ └── WebProtegeConfigurationException.java │ │ │ ├── inject │ │ │ ├── ActionHandlersModule.java │ │ │ ├── ApplicationDataFactory.java │ │ │ ├── ApplicationExecutorsRegistry.java │ │ │ ├── ApplicationModule.java │ │ │ ├── AuthenticationModule.java │ │ │ ├── ChangeHistoryFileFactory.java │ │ │ ├── ConfigurationTasksModule.java │ │ │ ├── DataDirectory.java │ │ │ ├── DataDirectoryProvider.java │ │ │ ├── DbAuthenticationSource.java │ │ │ ├── DbHost.java │ │ │ ├── DbHostProvider.java │ │ │ ├── DbModule.java │ │ │ ├── DbPassword.java │ │ │ ├── DbPort.java │ │ │ ├── DbPortProvider.java │ │ │ ├── DbUsername.java │ │ │ ├── EagerProjectSingletons.java │ │ │ ├── ExecutorServiceShutdownTask.java │ │ │ ├── FileSystemConfigurationModule.java │ │ │ ├── MailProperties.java │ │ │ ├── MongoClientProvider.java │ │ │ ├── MongoCredentialProvider.java │ │ │ ├── MongoDatabaseProvider.java │ │ │ ├── OverridableFile.java │ │ │ ├── OverridableFileFactory.java │ │ │ ├── ProjectActionHandlersModule.java │ │ │ ├── ProjectComponent.java │ │ │ ├── ShortFormModule.java │ │ │ ├── UploadsDirectory.java │ │ │ ├── UploadsDirectoryProvider.java │ │ │ ├── WebProtegePropertiesProvider.java │ │ │ └── project │ │ │ │ ├── ChangeHistoryFile.java │ │ │ │ ├── ChangeHistoryFileProvider.java │ │ │ │ ├── EventManagerProvider.java │ │ │ │ ├── OWLDataFactoryProvider.java │ │ │ │ ├── ProjectComparatorsModule.java │ │ │ │ ├── ProjectDirectory.java │ │ │ │ ├── ProjectDirectoryFactory.java │ │ │ │ ├── ProjectDirectoryProvider.java │ │ │ │ ├── ProjectModule.java │ │ │ │ ├── ProjectSpecificUiConfigurationDataDirectory.java │ │ │ │ ├── ProjectSpecificUiConfigurationDataDirectoryProvider.java │ │ │ │ ├── RevisionNumberProvider.java │ │ │ │ ├── RootOntology.java │ │ │ │ ├── RootOntologyDocument.java │ │ │ │ ├── RootOntologyDocumentProvider.java │ │ │ │ ├── UploadedProjectComponent.java │ │ │ │ └── UploadedProjectModule.java │ │ │ ├── issues │ │ │ ├── AddEntityCommentHandler.java │ │ │ ├── CommentConverter.java │ │ │ ├── CommentNotificationEmailGenerator.java │ │ │ ├── CommentNotificationEmailTemplate.java │ │ │ ├── CommentNotificationEmailer.java │ │ │ ├── CommentParticipantsExtractor.java │ │ │ ├── CommentRenderer.java │ │ │ ├── CreateEntityDiscussionThreadHandler.java │ │ │ ├── DeleteEntityCommentHandler.java │ │ │ ├── DiscussionThreadParticipantsExtractor.java │ │ │ ├── EditCommentActionHandler.java │ │ │ ├── EntityDiscussionThreadConverter.java │ │ │ ├── EntityDiscussionThreadRepository.java │ │ │ ├── GetCommentedEntitiesActionHandler.java │ │ │ ├── GetEntityDiscussionThreadsHandler.java │ │ │ ├── GetIssuesActionHandler.java │ │ │ ├── HasTargetEntities.java │ │ │ ├── IssueRepository.java │ │ │ ├── IssueStore.java │ │ │ └── SetDiscussionThreadStatusHandler.java │ │ │ ├── itemlist │ │ │ ├── GetPersonIdCompletionsActionHandler.java │ │ │ ├── GetPersonIdItemsActionHandler.java │ │ │ └── GetUserIdCompletionsActionHandler.java │ │ │ ├── jackson │ │ │ ├── EntityTypeDeserializer.java │ │ │ ├── EntityTypeSerializer.java │ │ │ ├── IriDeserializer.java │ │ │ ├── IriSerializer.java │ │ │ ├── OWLAnnotationValueDeserializer.java │ │ │ ├── OWLClassDeserializer.java │ │ │ ├── OWLEntityDeserializer.java │ │ │ ├── OWLEntitySerializer.java │ │ │ ├── OWLLiteralDeserializer.java │ │ │ ├── OWLLiteralSerializer.java │ │ │ ├── OWLPropertyDeserializer.java │ │ │ └── ObjectMapperProvider.java │ │ │ ├── lang │ │ │ ├── ActiveLanguagesManagerImpl.java │ │ │ ├── GetProjectLangTagsActionHandler.java │ │ │ └── LanguageManager.java │ │ │ ├── logging │ │ │ └── Markers.java │ │ │ ├── mail │ │ │ ├── CommentMessageIdGenerator.java │ │ │ ├── GetEmailAddressActionHandler.java │ │ │ ├── MailPropertiesProvider.java │ │ │ ├── MessageHeader.java │ │ │ ├── MessageId.java │ │ │ ├── MessageIdGenerator.java │ │ │ ├── MessagingExceptionHandler.java │ │ │ ├── MessagingExceptionHandlerImpl.java │ │ │ ├── SendMail.java │ │ │ ├── SendMailImpl.java │ │ │ ├── SetEmailAddressActionHandler.java │ │ │ ├── SetEmailAddressRequestValidator.java │ │ │ └── WebProtegeMimeMessage.java │ │ │ ├── mansyntax │ │ │ ├── ManchesterSyntaxChangeGenerator.java │ │ │ ├── ManchesterSyntaxFrameParser.java │ │ │ ├── OntologyAxiomPairChangeGenerator.java │ │ │ ├── ShellOntologyChecker.java │ │ │ ├── ShellOwlOntology.java │ │ │ ├── WebProtegeOWLEntityChecker.java │ │ │ └── render │ │ │ │ ├── AbstractOWLAxiomItemSectionRenderer.java │ │ │ │ ├── AbstractSectionRenderer.java │ │ │ │ ├── AnnotationPropertyComparatorImpl.java │ │ │ │ ├── AnnotationPropertyDomainSectionRenderer.java │ │ │ │ ├── AnnotationPropertyFrameRenderer.java │ │ │ │ ├── AnnotationPropertyRangeSectionRenderer.java │ │ │ │ ├── AnnotationPropertySubPropertyOfSectionRenderer.java │ │ │ │ ├── AnnotationsSectionRenderer.java │ │ │ │ ├── Bracketing.java │ │ │ │ ├── ClassDisjointWithSectionRenderer.java │ │ │ │ ├── ClassEquivalentToSectionRenderer.java │ │ │ │ ├── ClassFrameRenderer.java │ │ │ │ ├── ClassSubClassOfSectionRenderer.java │ │ │ │ ├── DataPropertyCharacteristicsSectionRenderer.java │ │ │ │ ├── DataPropertyDisjointWithSectionRenderer.java │ │ │ │ ├── DataPropertyDomainSectionRenderer.java │ │ │ │ ├── DataPropertyEquivalentToSectionRenderer.java │ │ │ │ ├── DataPropertyFrameRenderer.java │ │ │ │ ├── DataPropertyRangeSectionRenderer.java │ │ │ │ ├── DataPropertySubPropertyOfSectionRenderer.java │ │ │ │ ├── DefaultHttpLinkRenderer.java │ │ │ │ ├── DefaultItemStyleProvider.java │ │ │ │ ├── DeprecatedEntityChecker.java │ │ │ │ ├── DeprecatedEntityCheckerImpl.java │ │ │ │ ├── EntityIRIChecker.java │ │ │ │ ├── EntityIRICheckerImpl.java │ │ │ │ ├── FrameRenderer.java │ │ │ │ ├── FrameSectionRenderer.java │ │ │ │ ├── GetEntityHtmlRenderingActionHandler.java │ │ │ │ ├── GetEntityRenderingActionHandler.java │ │ │ │ ├── HasDefaultLanguage.java │ │ │ │ ├── HasGetRendering.java │ │ │ │ ├── HighlightedEntityChecker.java │ │ │ │ ├── HttpLinkRenderer.java │ │ │ │ ├── IRIOrdinalProvider.java │ │ │ │ ├── ImageLinkRenderer.java │ │ │ │ ├── ItemStyleProvider.java │ │ │ │ ├── LinkInfo.java │ │ │ │ ├── LinkRendererPlugin.java │ │ │ │ ├── LiteralRenderer.java │ │ │ │ ├── LiteralStyle.java │ │ │ │ ├── ManchesterSyntaxEntityFrameRenderer.java │ │ │ │ ├── ManchesterSyntaxObjectRenderer.java │ │ │ │ ├── MarkdownLiteralRenderer.java │ │ │ │ ├── NamedIndividualDifferentFromSectionRenderer.java │ │ │ │ ├── NamedIndividualFactsSectionRenderer.java │ │ │ │ ├── NamedIndividualFrameRenderer.java │ │ │ │ ├── NamedIndividualSameAsSectionRenderer.java │ │ │ │ ├── NamedIndividualTypesSectionRenderer.java │ │ │ │ ├── NestedAnnotationStyle.java │ │ │ │ ├── NullDeprecatedEntityChecker.java │ │ │ │ ├── NullHighlightedEntityChecker.java │ │ │ │ ├── NullHttpLinkRenderer.java │ │ │ │ ├── ObjectPropertyCharacteristicsSectionRenderer.java │ │ │ │ ├── ObjectPropertyDisjointWithSectionRenderer.java │ │ │ │ ├── ObjectPropertyDomainSectionRenderer.java │ │ │ │ ├── ObjectPropertyEquivalentToSectionRenderer.java │ │ │ │ ├── ObjectPropertyFrameRenderer.java │ │ │ │ ├── ObjectPropertyInverseOfSectionRenderer.java │ │ │ │ ├── ObjectPropertyRangeSectionRenderer.java │ │ │ │ ├── ObjectPropertySubPropertyChainSectionRenderer.java │ │ │ │ ├── ObjectPropertySubPropertyOfRenderer.java │ │ │ │ ├── OntologyAnnotationsSectionRenderer.java │ │ │ │ ├── OwlOntologyFacade.java │ │ │ │ ├── PlainLinkRenderer.java │ │ │ │ ├── PrettyPrint.java │ │ │ │ ├── RenderableFormat.java │ │ │ │ ├── WikipediaXRefLinkRenderer.java │ │ │ │ └── mansyntax.css │ │ │ ├── match │ │ │ ├── AndMatcher.java │ │ │ ├── AnnotationMatcher.java │ │ │ ├── AnnotationPropertyMatcher.java │ │ │ ├── AnnotationValuesAreNotDisjointMatcher.java │ │ │ ├── AnythingMatcher.java │ │ │ ├── ConflictingBooleanValuesMatcher.java │ │ │ ├── DateIsAfterMatcher.java │ │ │ ├── DateIsBeforeMatcher.java │ │ │ ├── EntityAnnotationMatcher.java │ │ │ ├── EntityIsDeprecatedMatcher.java │ │ │ ├── EntityRelationshipMatcher.java │ │ │ ├── GetMatchingEntitiesActionHandler.java │ │ │ ├── InstanceOfMatcher.java │ │ │ ├── IriAnnotationValueMatcher.java │ │ │ ├── IriAnnotationsMatcher.java │ │ │ ├── IriLexicalValueMatcher.java │ │ │ ├── LangTagIsEmptyMatcher.java │ │ │ ├── LangTagMatchesMatcher.java │ │ │ ├── LexicalValueNotInDatatypeSpaceMatcher.java │ │ │ ├── LiteralAnnotationValueMatcher.java │ │ │ ├── LiteralInLexicalSpaceMatcher.java │ │ │ ├── LiteralMatcher.java │ │ │ ├── LiteralMatcherFactory.java │ │ │ ├── MatcherAdapter.java │ │ │ ├── MatcherFactory.java │ │ │ ├── MatchingEngineImpl.java │ │ │ ├── NonUniqueLangTagsMatcher.java │ │ │ ├── NotMatcher.java │ │ │ ├── NumericValueMatcher.java │ │ │ ├── OrMatcher.java │ │ │ ├── PropertyValueMatcher.java │ │ │ ├── RelationshipValueMatcher.java │ │ │ ├── StringContainsMatcher.java │ │ │ ├── StringContainsRegexMatchMatcher.java │ │ │ ├── StringContainsRepeatedWhiteSpaceMatcher.java │ │ │ ├── StringEndsWithMatcher.java │ │ │ ├── StringEqualsMatcher.java │ │ │ ├── StringHasUntrimmedSpaceMatcher.java │ │ │ ├── StringStartsWithMatcher.java │ │ │ └── SubClassOfMatcher.java │ │ │ ├── merge │ │ │ ├── AnnotationDiffCalculator.java │ │ │ ├── AxiomDiffCalculator.java │ │ │ ├── ComputeProjectMergeActionHandler.java │ │ │ ├── MergeUploadedProjectActionHandler.java │ │ │ ├── ModifiedProjectOntologiesCalculator.java │ │ │ ├── OntologyDiffCalculator.java │ │ │ ├── OntologyPatcher.java │ │ │ └── ProjectOntologiesBuilder.java │ │ │ ├── merge_add │ │ │ ├── ExistingOntologyMergeAddActionHandler.java │ │ │ ├── GetAllOntologiesActionHandler.java │ │ │ ├── MergeOntologyCalculator.java │ │ │ ├── NewOntologyMergeAddActionHandler.java │ │ │ └── OntologyMergeAddPatcher.java │ │ │ ├── msg │ │ │ ├── MessageFormatter.java │ │ │ └── OWLMessageFormatter.java │ │ │ ├── object │ │ │ └── OWLObjectComparatorImpl.java │ │ │ ├── obo │ │ │ ├── AnnotationToXRefConverter.java │ │ │ ├── GetOboNamespacesActionHandler.java │ │ │ ├── GetOboTermCrossProductsActionHandler.java │ │ │ ├── GetOboTermDefinitionActionHandler.java │ │ │ ├── GetOboTermIdActionHandler.java │ │ │ ├── GetOboTermRelationshipsActionHandler.java │ │ │ ├── GetOboTermSynonymsActionHandler.java │ │ │ ├── GetOboTermXRefsActionHandler.java │ │ │ ├── OBONamespaceCache.java │ │ │ ├── OboUtil.java │ │ │ ├── RelationshipConverter.java │ │ │ ├── SetOboTermCrossProductsActionHandler.java │ │ │ ├── SetOboTermDefinitionActionHandler.java │ │ │ ├── SetOboTermIdActionHandler.java │ │ │ ├── SetOboTermSynonymsActionHandler.java │ │ │ ├── SetOboTermXRefsActionHandler.java │ │ │ ├── TermCrossProductsManager.java │ │ │ ├── TermDefinitionManager.java │ │ │ ├── TermDefinitionManagerImpl.java │ │ │ ├── TermIdManager.java │ │ │ ├── TermRelationshipsManager.java │ │ │ ├── TermSynonymsManager.java │ │ │ ├── TermXRefsManager.java │ │ │ ├── XRefConverter.java │ │ │ └── XRefExtractor.java │ │ │ ├── owlapi │ │ │ ├── BinaryOWLStorerFactory.java │ │ │ ├── ConjunctSet.java │ │ │ ├── HasContainsEntityInSignatureImpl.java │ │ │ ├── NonCachingDataFactory.java │ │ │ ├── OWLEntityCreator.java │ │ │ ├── OWLObjectStringFormatter.java │ │ │ ├── ProjectAnnotationAssertionAxiomsBySubjectIndexImpl.java │ │ │ ├── RenameMap.java │ │ │ ├── StringFormatterLiteralRendererImpl.java │ │ │ └── WebProtegeOWLManager.java │ │ │ ├── permissions │ │ │ ├── GetProjectPermissionsActionHandler.java │ │ │ ├── ProjectPermissionsManager.java │ │ │ ├── ProjectPermissionsManagerImpl.java │ │ │ └── RebuildPermissionsActionHandler.java │ │ │ ├── persistence │ │ │ ├── CommentIdConverter.java │ │ │ ├── Converter.java │ │ │ ├── DbName.java │ │ │ ├── DocumentConverter.java │ │ │ ├── DocumentConverterUtil.java │ │ │ ├── EmailAddressReadConverter.java │ │ │ ├── EmailAddressWriteConverter.java │ │ │ ├── Indexable.java │ │ │ ├── IssueEventReadConverter.java │ │ │ ├── MentionReadConverter.java │ │ │ ├── MilestoneReadConverter.java │ │ │ ├── MilestoneWriteConverter.java │ │ │ ├── MorphiaDatastoreProvider.java │ │ │ ├── MorphiaProvider.java │ │ │ ├── OWLEntityConverter.java │ │ │ ├── OWLEntityReadConverter.java │ │ │ ├── OWLEntityWriteConverter.java │ │ │ ├── ProjectIdConverter.java │ │ │ ├── ProjectIdReadConverter.java │ │ │ ├── ProjectIdWriteConverter.java │ │ │ ├── Repository.java │ │ │ ├── SaltReadConverter.java │ │ │ ├── SaltWriteConverter.java │ │ │ ├── SaltedPasswordDigestReadConverter.java │ │ │ ├── SaltedPasswordDigestWriteConverter.java │ │ │ ├── ThreadIdConverter.java │ │ │ ├── TypeSafeConverter.java │ │ │ ├── UserIdConverter.java │ │ │ ├── UserIdReadConverter.java │ │ │ └── UserIdWriteConverter.java │ │ │ ├── perspective │ │ │ ├── BuiltInPerspective.java │ │ │ ├── BuiltInPerspectiveLoader.java │ │ │ ├── BuiltInPerspectivesProvider.java │ │ │ ├── GetPerspectiveDetailsActionHandler.java │ │ │ ├── GetPerspectiveLayoutActionHandler.java │ │ │ ├── GetPerspectivesActionHandler.java │ │ │ ├── PerspectiveDescriptorRepository.java │ │ │ ├── PerspectiveDescriptorRepositoryImpl.java │ │ │ ├── PerspectiveDescriptorsRecord.java │ │ │ ├── PerspectiveLayoutRecord.java │ │ │ ├── PerspectiveLayoutRepository.java │ │ │ ├── PerspectiveLayoutRepositoryImpl.java │ │ │ ├── PerspectivesManager.java │ │ │ ├── PerspectivesManagerImpl.java │ │ │ ├── ResetPerspectiveLayoutActionHandler.java │ │ │ ├── ResetPerspectivesActionHandler.java │ │ │ ├── SetPerspectiveLayoutActionHandler.java │ │ │ └── SetPerspectivesActionHandler.java │ │ │ ├── project │ │ │ ├── BuiltInPrefixDeclarationsLoader.java │ │ │ ├── CreateNewProjectActionHandler.java │ │ │ ├── DefaultOntologyIdManager.java │ │ │ ├── DefaultOntologyIdManagerImpl.java │ │ │ ├── DormantProjectTime.java │ │ │ ├── GetAvailableProjectsWithPermissionActionHandler.java │ │ │ ├── GetProjectDetailsActionHandler.java │ │ │ ├── GetProjectInfoActionHandler.java │ │ │ ├── GetProjectPrefixDeclarationsActionHandler.java │ │ │ ├── InstantiationMode.java │ │ │ ├── Ontology.java │ │ │ ├── PrefixDeclarationsCsvParser.java │ │ │ ├── PrefixDeclarationsStore.java │ │ │ ├── ProjectAccessManager.java │ │ │ ├── ProjectAccessManagerImpl.java │ │ │ ├── ProjectCache.java │ │ │ ├── ProjectComponentFactory.java │ │ │ ├── ProjectDetailsManager.java │ │ │ ├── ProjectDetailsManagerImpl.java │ │ │ ├── ProjectDetailsRepository.java │ │ │ ├── ProjectIdFactory.java │ │ │ ├── ProjectImporter.java │ │ │ ├── ProjectInputSource.java │ │ │ ├── ProjectManager.java │ │ │ ├── ProjectOntologyManagerLoader.java │ │ │ ├── RawProjectSources.java │ │ │ ├── RawProjectSourcesExtractor.java │ │ │ ├── RawProjectSourcesImporter.java │ │ │ ├── RecentProjectRecord.java │ │ │ ├── RootOntologyDocumentFileMatcher.java │ │ │ ├── RootOntologyDocumentMatcherImpl.java │ │ │ ├── SetProjectPrefixDeclarationsActionHandler.java │ │ │ ├── SingleDocumentProjectSourcesExtractor.java │ │ │ ├── UploadedProjectSourcesExtractor.java │ │ │ ├── ZipArchiveProjectSourcesExtractor.java │ │ │ └── chg │ │ │ │ ├── ChangeManager.java │ │ │ │ ├── OntologyChangeTranslator.java │ │ │ │ └── OntologyChangeTranslatorVisitor.java │ │ │ ├── projectsettings │ │ │ ├── GetProjectSettingsActionHandler.java │ │ │ └── SetProjectSettingsActionHandler.java │ │ │ ├── renderer │ │ │ ├── ContextRenderer.java │ │ │ ├── LiteralLangTagTransformer.java │ │ │ ├── LiteralLexicalFormTransformer.java │ │ │ ├── LiteralRenderer.java │ │ │ ├── ManchesterSyntaxKeywords.java │ │ │ ├── OWLObjectRendererImpl.java │ │ │ ├── RenderingManager.java │ │ │ └── ShortFormAdapter.java │ │ │ ├── revision │ │ │ ├── EntitiesByRevisionCache.java │ │ │ ├── GetHeadRevisionNumberActionHandler.java │ │ │ ├── GetRevisionSummariesActionHandler.java │ │ │ ├── HeadRevisionNumberFinder.java │ │ │ ├── ProjectChangesManager.java │ │ │ ├── RevisionDetailsExtractor.java │ │ │ ├── RevisionManagerImpl.java │ │ │ ├── RevisionSerializationTask.java │ │ │ ├── RevisionSerializationVocabulary.java │ │ │ ├── RevisionStore.java │ │ │ ├── RevisionStoreFactory.java │ │ │ ├── RevisionStoreImpl.java │ │ │ └── RevisionStoreProvider.java │ │ │ ├── search │ │ │ ├── EntitySearchFilterRepository.java │ │ │ ├── EntitySearchFilterRepositoryImpl.java │ │ │ ├── EntitySearcher.java │ │ │ ├── GetSearchSettingsActionHandler.java │ │ │ ├── PerformEntitySearchActionHandler.java │ │ │ ├── ProjectEntitySearchFiltersManagerImpl.java │ │ │ └── SetSearchSettingsActionHandler.java │ │ │ ├── session │ │ │ ├── WebProtegeSession.java │ │ │ └── WebProtegeSessionAttribute.java │ │ │ ├── sharing │ │ │ ├── GetProjectSharingSettingsActionHandler.java │ │ │ ├── ProjectSharingSettingsManager.java │ │ │ ├── ProjectSharingSettingsManagerImpl.java │ │ │ ├── Roles.java │ │ │ └── SetProjectSharingSettingsActionHandler.java │ │ │ ├── shortform │ │ │ ├── BuiltInShortFormDictionary.java │ │ │ ├── DefaultShortFormAnnotationPropertyIRIs.java │ │ │ ├── DictionaryManager.java │ │ │ ├── DictionaryUpdatesProcessor.java │ │ │ ├── EscapingShortFormProvider.java │ │ │ ├── IriShortFormAdapter.java │ │ │ ├── LocalNameShortFormCache.java │ │ │ ├── Scanner.java │ │ │ ├── ShortFormCache.java │ │ │ └── WebProtegeOntologyIRIShortFormProvider.java │ │ │ ├── tag │ │ │ ├── CriteriaBasedTagsManager.java │ │ │ ├── EntityTagsRepositoryCachingImpl.java │ │ │ ├── EntityTagsRepositoryImpl.java │ │ │ ├── GetEntityTagsActionHandler.java │ │ │ ├── GetProjectTagsActionHandler.java │ │ │ ├── SetProjectTagsActionHandler.java │ │ │ ├── TagIdConverter.java │ │ │ ├── TagRepositoryCachingImpl.java │ │ │ ├── TagRepositoryImpl.java │ │ │ ├── TagsManager.java │ │ │ └── UpdateEntityTagsActionHandler.java │ │ │ ├── templates │ │ │ ├── TemplateEngine.java │ │ │ └── TemplateObjectsBuilder.java │ │ │ ├── trigger │ │ │ ├── Trigger.java │ │ │ ├── TriggerAction.java │ │ │ └── TriggerRunner.java │ │ │ ├── upload │ │ │ ├── DocumentResolver.java │ │ │ ├── DocumentResolverImpl.java │ │ │ ├── MaxUploadSizeSupplier.java │ │ │ ├── UploadedOntologiesCache.java │ │ │ ├── UploadedOntologiesCacheService.java │ │ │ └── UploadedOntologiesProcessor.java │ │ │ ├── usage │ │ │ ├── GetUsageActionHandler.java │ │ │ └── ReferencingAxiomVisitor.java │ │ │ ├── user │ │ │ ├── CreateUserAccountActionHandler.java │ │ │ ├── GetUserIdsActionHandler.java │ │ │ ├── HasGetUserIdByEmailAddress.java │ │ │ ├── HasGetUserIdByUserIdOrEmail.java │ │ │ ├── HasUserIds.java │ │ │ ├── LogOutUserActionHandler.java │ │ │ ├── UserActivityManager.java │ │ │ ├── UserActivityManagerProvider.java │ │ │ ├── UserActivityRecord.java │ │ │ ├── UserDetailsManager.java │ │ │ ├── UserDetailsManagerImpl.java │ │ │ ├── UserRecord.java │ │ │ ├── UserRecordConverter.java │ │ │ └── UserRecordRepository.java │ │ │ ├── util │ │ │ ├── AlphaNumericStringComparator.java │ │ │ ├── ClassExpression.java │ │ │ ├── Counter.java │ │ │ ├── EntityDeleter.java │ │ │ ├── FileContentsSizeCalculator.java │ │ │ ├── IdUtil.java │ │ │ ├── MemoryMonitor.java │ │ │ ├── Named.java │ │ │ ├── OWLOntologyChangeDataVisitorAdapter.java │ │ │ ├── OntologyDocumentFileFilter.java │ │ │ ├── ReferenceFinder.java │ │ │ ├── TempFileFactory.java │ │ │ ├── TempFileFactoryImpl.java │ │ │ ├── ZipFileExtractor.java │ │ │ └── ZipInputStreamChecker.java │ │ │ ├── viz │ │ │ ├── DotRenderer.java │ │ │ ├── EdgeMatcher.java │ │ │ ├── EdgeMatcherFactory.java │ │ │ ├── EntityGraphBuilder.java │ │ │ ├── EntityGraphEdgeLimit.java │ │ │ ├── EntityGraphSettingsRepository.java │ │ │ ├── EntityGraphSettingsRepositoryImpl.java │ │ │ ├── GetEntityGraphActionHandler.java │ │ │ ├── GetUserProjectEntityGraphCriteriaActionHandler.java │ │ │ ├── SetEntityGraphActiveFiltersActionHandler.java │ │ │ └── SetUserProjectEntityGraphCriteriaActionHandler.java │ │ │ ├── watches │ │ │ ├── AddWatchActionHandler.java │ │ │ ├── GetWatchesActionHandler.java │ │ │ ├── IndirectlyWatchedEntitiesFinder.java │ │ │ ├── RemoveWatchActionHandler.java │ │ │ ├── SetEntityWatchesActionHandler.java │ │ │ ├── WatchManager.java │ │ │ ├── WatchManagerImpl.java │ │ │ ├── WatchNotificationEmailTemplate.java │ │ │ ├── WatchRecord.java │ │ │ ├── WatchRecordRepository.java │ │ │ ├── WatchRecordRepositoryImpl.java │ │ │ ├── WatchTriggeredHandler.java │ │ │ ├── WatchTriggeredHandlerImpl.java │ │ │ └── WatchedChangesManager.java │ │ │ └── webhook │ │ │ ├── CommentNotificationSlackTemplate.java │ │ │ ├── CommentPostedSlackWebhookInvoker.java │ │ │ ├── JsonPayloadWebhookExecutor.java │ │ │ ├── PostWebhookPayloadTask.java │ │ │ ├── ProjectChangedWebhookInvoker.java │ │ │ ├── ProjectChangedWebhookPayload.java │ │ │ ├── SlackWebhookRepository.java │ │ │ ├── SlackWebhookRepositoryImpl.java │ │ │ ├── WebhookExecutor.java │ │ │ ├── WebhookInvocation.java │ │ │ ├── WebhookInvoker.java │ │ │ ├── WebhookRepository.java │ │ │ └── WebhookRepositoryImpl.java │ └── resources │ │ ├── amino-acid-form.json │ │ ├── built-in-prefixes.csv │ │ ├── form.json │ │ ├── mail.properties │ │ ├── templates │ │ ├── comment-notification-email-template.html │ │ ├── comment-notification-slack-template.json │ │ ├── password-reset-email-template.html │ │ └── watch-notification-email-template.html │ │ └── webprotege.properties │ └── test │ ├── java │ └── edu │ │ └── stanford │ │ └── bmir │ │ └── protege │ │ └── web │ │ ├── MockingUtils.java │ │ ├── server │ │ ├── OWLAnnotationAssertionWithLexicalValueMatcher.java │ │ ├── OWLDeclarationAxiomMatcher.java │ │ ├── OWLEntityMatcher.java │ │ ├── OWLLiteralWithLexicalValueMatcher.java │ │ ├── RdfsLabelWithLexicalValueAndLang.java │ │ ├── RdfsLabelWithLexicalValueMatcher.java │ │ ├── access │ │ │ ├── AccessManagerImpl_IT.java │ │ │ ├── ApplicationResource_TestCase.java │ │ │ ├── ProjectResource_TestCase.java │ │ │ ├── RoleAssignment_TestCase.java │ │ │ ├── Role_TestCase.java │ │ │ ├── Subject_AnySignedInUser_TestCase.java │ │ │ ├── Subject_GuestUser_TestCase.java │ │ │ └── Subject_SpecificUser_TestCase.java │ │ ├── admin │ │ │ ├── ApplicationPreferencesManager_TestCase.java │ │ │ ├── ApplicationPreferencesStore_IT.java │ │ │ └── GetApplicationPreferencesActionHandler_TestCase.java │ │ ├── api │ │ │ ├── ApiKeyHasher_TestCase.java │ │ │ ├── ApiKeyIdConverter_TestCase.java │ │ │ ├── ApiKeyManager_IT.java │ │ │ ├── ApiKeyParser_TestCase.java │ │ │ ├── ApiKeyRecord_TestCase.java │ │ │ ├── HashedApiKeyConverter_TestCase.java │ │ │ ├── HashedApiKey_TestCase.java │ │ │ └── UserApiKeyStoreImpl_IT.java │ │ ├── app │ │ │ ├── ApplicationPreferences_TestCase.java │ │ │ └── UserInSessionFactory_TestCase.java │ │ ├── auth │ │ │ ├── ChallengeMessageProvider_TestCase.java │ │ │ ├── ChapResponseChecker_TestCase.java │ │ │ ├── ChapSessionFactory_TestCase.java │ │ │ ├── ChapSessionIdProvider_TestCase.java │ │ │ ├── ChapSessionManager_TestCase.java │ │ │ ├── GetChapSessionActionHandler_TestCase.java │ │ │ └── PerformLoginActionHandler_TestCase.java │ │ ├── axiom │ │ │ ├── AxiomByRenderingComparator_TestCase.java │ │ │ ├── AxiomBySubjectComparator_TestCase.java │ │ │ ├── AxiomByTypeComparator_TestCase.java │ │ │ ├── AxiomComparatorImpl_TestCase.java │ │ │ ├── AxiomIRISubjectProvider_TestCase.java │ │ │ ├── AxiomSubjectProvider_TestCase.java │ │ │ └── DefaultAxiomTypeOrdering_TestCase.java │ │ ├── change │ │ │ ├── ChangeApplicationResult_TestCase.java │ │ │ ├── ChangeGenerationContext_TestCase.java │ │ │ ├── OntologyChangeRecordTranslatorImpl_TestCase.java │ │ │ ├── OwlOntologyChangeTranslatorVisitor_TestCase.java │ │ │ ├── OwlOntologyChangeTranslator_TestCase.java │ │ │ └── RevisionReverterChangeListGenerator_TestCase.java │ │ ├── chgpwd │ │ │ ├── PasswordResetMailer_IT.java │ │ │ ├── ResetPasswordActionHandler_TestCase.java │ │ │ └── ResetPasswordMailer_TestCase.java │ │ ├── collection │ │ │ └── CollectionElementDataRepository_IT.java │ │ ├── crud │ │ │ ├── EntityCrudKitSettingsTestCase.java │ │ │ ├── EntityCrudKitSettings_SerializationTestCase.java │ │ │ ├── EntityIriPrefixResolver_TestCase.java │ │ │ ├── IRIParserTestCase.java │ │ │ ├── NamespacesTestCase.java │ │ │ ├── PrefixedNameExpanderBuilderTestCase.java │ │ │ ├── PrefixedNameExpanderTestCase.java │ │ │ ├── obo │ │ │ │ ├── OboIdSessionTestCase.java │ │ │ │ └── OboIdSuffixSettings_SerializationTestCase.java │ │ │ ├── persistence │ │ │ │ ├── EntityCrudKitIdTestCase.java │ │ │ │ ├── ProjectEntityCrudKitSettingsTestCase.java │ │ │ │ └── ProjectEntityCrudKitSettings_SerializationTestCase.java │ │ │ ├── supplied │ │ │ │ ├── SuppliedNameSuffixEntityCrudKitHandlerTestCase.java │ │ │ │ └── SuppliedNameSuffixSettings_SerializationTestCase.java │ │ │ └── uuid │ │ │ │ ├── UuidEntityCrudKitHandlerTestCase.java │ │ │ │ ├── UuidEntityCrudKitPluginTestCase.java │ │ │ │ └── UuidSuffixSettings_SerializationTestCase.java │ │ ├── dispatch │ │ │ ├── ExecutionContext_TestCase.java │ │ │ ├── impl │ │ │ │ └── DispatchServiceExecutorImpl_TestCase.java │ │ │ └── validators │ │ │ │ └── UserIsSignedInValidator_TestCase.java │ │ ├── download │ │ │ └── ProjectDownloadCache_TestCase.java │ │ ├── entity │ │ │ └── MergeEntitiesChangeListGenerator_TestCase.java │ │ ├── form │ │ │ ├── AxiomTemplatesParser_IT.java │ │ │ ├── EntityFormRepositoryImpl_IT.java │ │ │ ├── EntityFormSelectorRepositoryImpl_IT.java │ │ │ ├── FormDataConverter_TestCase.java │ │ │ ├── FormDataRepository_IT.java │ │ │ ├── FormDescriptor_Serialization_IT.java │ │ │ ├── FormFieldDescriptor_Serialization_IT.java │ │ │ ├── FormFrameFlattener_TestCase.java │ │ │ ├── field │ │ │ │ ├── GridColumnDescriptor_Serialization_Test.java │ │ │ │ └── GridControlDescriptor_Serialization_TestCase.java │ │ │ └── processor │ │ │ │ ├── FormControlDataProcessor_TestCase.java │ │ │ │ ├── FormDataProcessor_TestCase.java │ │ │ │ ├── FormFieldProcessor_TestCase.java │ │ │ │ ├── GridCellDataProcessor_TestCase.java │ │ │ │ ├── GridControlDataProcessor_TestCase.java │ │ │ │ └── GridRowDataProcessor_TestCase.java │ │ ├── frame │ │ │ ├── OwlOntologyFacade_ManchesterSyntaxAxioms_TestCase.java │ │ │ └── translator │ │ │ │ ├── Annotation2PropertyValueTranslator_TestCase.java │ │ │ │ └── ClassExpression2PropertyValuesTranslator_TestCase.java │ │ ├── hierarchy │ │ │ ├── AnnotationPropertyHierarchyProviderImpl_TestCase.java │ │ │ ├── ClassHierarchyProviderImpl_TestCase.java │ │ │ ├── DataPropertyHierarchyProvider_TestCase.java │ │ │ └── ObjectPropertyHierarchyProviderImpl_TestCase.java │ │ ├── index │ │ │ └── impl │ │ │ │ ├── AnnotationAssertionAxiomsBySubjectIndexImpl_TestCase.java │ │ │ │ ├── AnnotationAssertionAxiomsByValueIndexImpl_TestCase.java │ │ │ │ ├── AnnotationAxiomsByIriReferenceIndexImpl_AnnotationAssertionAxiom_TestCase.java │ │ │ │ ├── AnnotationAxiomsByIriReferenceIndexImpl_AnnotationPropertyDomain_TestCase.java │ │ │ │ ├── AnnotationAxiomsByIriReferenceIndexImpl_AnnotationPropertyRange_TestCase.java │ │ │ │ ├── AnnotationPropertyDomainAxiomsIndexImpl_TestCase.java │ │ │ │ ├── AnnotationPropertyRangeAxiomsIndexImpl_TestCase.java │ │ │ │ ├── AxiomChangeHandler_TestCase.java │ │ │ │ ├── AxiomMultimapIndex_UnaryKey_TestCase.java │ │ │ │ ├── AxiomMultimap_Nary_TestCase.java │ │ │ │ ├── AxiomsByEntityReferenceIndexImpl_ContainsEntityInOntologyAxiomsSignature_TestCase.java │ │ │ │ ├── AxiomsByEntityReferenceIndexImpl_TestCase.java │ │ │ │ ├── AxiomsByReferenceIndexImpl_TestCase.java │ │ │ │ ├── AxiomsByTypeIndexImpl_TestCase.java │ │ │ │ ├── ClassAssertionAxiomsByClassIndexImpl_TestCase.java │ │ │ │ ├── ClassAssertionAxiomsByIndividualIndexImpl_TestCase.java │ │ │ │ ├── DataPropertyAssertionAxiomsBySubjectIndexImpl_TestCase.java │ │ │ │ ├── DataPropertyCharacteristicsIndexImpl_TestCase.java │ │ │ │ ├── DataPropertyDomainAxiomsIndexImpl_TestCase.java │ │ │ │ ├── DataPropertyRangeAxiomsIndex_TestCase.java │ │ │ │ ├── DeprecatedEntitiesByEntityIndexImpl_TestCase.java │ │ │ │ ├── DifferentIndividualsAxiomsIndexImpl_TestCase.java │ │ │ │ ├── DisjointClassesAxiomsIndexImpl_TestCase.java │ │ │ │ ├── DisjointDataPropertiesAxiomsIndexImpl_TestCase.java │ │ │ │ ├── DisjointObjectPropertiesAxiomsIndexImpl_TestCase.java │ │ │ │ ├── EntitiesInOntologySignatureByIriIndexImpl_TestCase.java │ │ │ │ ├── EntitiesInOntologySignatureIndexImpl_TestCase.java │ │ │ │ ├── EntitiesInProjectSignatureByIriIndexImpl_TestCase.java │ │ │ │ ├── EntitiesInProjectSignatureIndexImpl_TestCase.java │ │ │ │ ├── EquivalentClassesAxiomsIndexImpl_TestCase.java │ │ │ │ ├── EquivalentDataPropertiesAxiomsIndexImpl_TestCase.java │ │ │ │ ├── EquivalentObjectPropertiesAxiomsIndexImpl_TestCase.java │ │ │ │ ├── IndividualsByTypeIndexImpl_TestCase.java │ │ │ │ ├── InverseObjectPropertyAxiomsIndexImpl_TestCase.java │ │ │ │ ├── ObjectPropertyAssertionAxiomsBySubjectIndexImpl_TestCase.java │ │ │ │ ├── ObjectPropertyCharacteristicsIndexImpl_TestCase.java │ │ │ │ ├── ObjectPropertyDomainAxiomsIndexImpl_TestCase.java │ │ │ │ ├── ObjectPropertyRangeAxiomsIndexImpl_TestCase.java │ │ │ │ ├── OntologyAnnotationsIndexImpl_TestCase.java │ │ │ │ ├── OntologyAxiomsIndexImpl_TestCase.java │ │ │ │ ├── OntologySignatureByTypeIndexImpl_TestCase.java │ │ │ │ ├── OntologySignatureIndexImpl_TestCase.java │ │ │ │ ├── ProjectClassAssertionAxiomsByIndividualIndexImpl_TestCase.java │ │ │ │ ├── ProjectOntologiesIndexImpl_TestCase.java │ │ │ │ ├── ProjectSignatureByTypeIndexImpl_TestCase.java │ │ │ │ ├── ProjectSignatureIndexImpl_TestCase.java │ │ │ │ ├── PropertyAssertionAxiomsBySubjectIndexImpl_TestCase.java │ │ │ │ ├── RootIndexImpl_TestCase.java │ │ │ │ ├── SameIndividualAxiomsIndexImpl_TestCase.java │ │ │ │ ├── SubAnnotationPropertyAxiomsBySubPropertyIndexImpl_TestCase.java │ │ │ │ ├── SubAnnotationPropertyAxiomsBySuperPropertyIndexImpl_TestCase.java │ │ │ │ ├── SubClassOfAxiomsBySubClassIndexImpl_TestCase.java │ │ │ │ ├── SubDataPropertyAxiomsBySubPropertyIndexImpl_TestCase.java │ │ │ │ └── SubObjectPropertyAxiomsBySubPropertyIndexImpl_TestCase.java │ │ ├── inject │ │ │ ├── ApplicationExecutorsRegistry_TestCase.java │ │ │ └── MongoCredentialProvider_TestCase.java │ │ ├── issues │ │ │ ├── CommentNotificationEmailGenerator_TestCase.java │ │ │ ├── CommentParticipantsExtractor_TestCase.java │ │ │ ├── CommentRenderer_TestCase.java │ │ │ ├── DiscussionThreadParticipantsExtractor_TestCase.java │ │ │ └── EntityDiscussionThreadRepository_IT.java │ │ ├── itemlist │ │ │ ├── GetPersonIdItemsActionHandler_TestCase.java │ │ │ └── GetUserIdCompletionsActionHandler_TestCase.java │ │ ├── jackson │ │ │ ├── IRI_Serialization_TestCase.java │ │ │ └── OWLLiteral_Serialization_TestCase.java │ │ ├── lang │ │ │ └── ActiveLanguagesManagerImpl_TestCase.java │ │ ├── mail │ │ │ ├── CommentMessageIdGenerator_TestCase.java │ │ │ ├── MessageIdGenerator_TestCase.java │ │ │ ├── MessageId_TestCase.java │ │ │ └── SendMailImplTestCase.java │ │ ├── manager │ │ │ └── WebProtegeOntologyManagerSaveBinaryDocumentTestCase.java │ │ ├── mansyntax │ │ │ ├── ManchesterSyntaxFrameParser_TestCase.java │ │ │ ├── OntologyAxiomPairChangeGeneratorTestCase.java │ │ │ ├── OntologyAxiomPairOntologySwitchTestCase.java │ │ │ ├── ShellOntologyChecker_TestCase.java │ │ │ └── ShellOwlOntology_TestCase.java │ │ ├── match │ │ │ ├── AndMatcher_TestCase.java │ │ │ ├── AnnotationMatcher_TestCase.java │ │ │ ├── AnnotationPropertyMatcher_TestCase.java │ │ │ ├── AnnotationValuesAreNotDisjointMatcher_TestCase.java │ │ │ ├── ConflictingBooleanValuesMatcher_TestCase.java │ │ │ ├── DateIsAfterMatcher_TestCase.java │ │ │ ├── DateIsBeforeMatcher_TestCase.java │ │ │ ├── EntityIsDeprecatedMatcher_TestCase.java │ │ │ ├── IriAnnotationValueMatcher_TestCase.java │ │ │ ├── IriLexicalValueMatcher_TestCase.java │ │ │ ├── LangTagMatchesMatcher_TestCase.java │ │ │ ├── LexicalValueNotInDatatypeSpaceMatcher_TestCase.java │ │ │ ├── LiteralAnnotationValueMatcher_TestCase.java │ │ │ ├── LiteralInLexicalSpaceMatcher_TestCase.java │ │ │ ├── LiteralMatcher_TestCase.java │ │ │ ├── NonUniqueLangTagsMatcher_TestCase.java │ │ │ ├── NotMatcher_TestCase.java │ │ │ ├── NumericValueMatcher_TestCase.java │ │ │ ├── OrMatcher_TestCase.java │ │ │ ├── StringContainsMatcher_TestCase.java │ │ │ ├── StringContainsRegexMatchMatcher_TestCase.java │ │ │ ├── StringContainsRepeatedWhiteSpaceMatcher_TestCase.java │ │ │ ├── StringEndsWithMatcher_TestCase.java │ │ │ ├── StringEqualsMatcher_TestCase.java │ │ │ └── StringStartsWithMatcher_TestCase.java │ │ ├── merge │ │ │ ├── AnnotationDiffCalculator_TestCase.java │ │ │ ├── AxiomDiffCalculator_TestCase.java │ │ │ ├── ModifiedProjectOntologiesCalculator_TestCase.java │ │ │ ├── OntologyDiff2Changes_TestCase.java │ │ │ ├── OntologyDiffCalculator_TestCase.java │ │ │ ├── OntologyPatcher_TestCase.java │ │ │ └── ProjectOntologiesBuilder_TestCase.java │ │ ├── merge_add │ │ │ └── MergeOntologyCalculator_TestCase.java │ │ ├── metaproject │ │ │ ├── DigestedPassword_TestCase.java │ │ │ └── UserDetailsManagerImpl_TestCase.java │ │ ├── object │ │ │ ├── OWLClassExpressionSelector_TestCase.java │ │ │ ├── OWLDataPropertyExpressionSelector_TestCase.java │ │ │ ├── OWLIndividualSelector_TestCase.java │ │ │ ├── OWLObjectPropertyExpressionSelector_TestCase.java │ │ │ └── SWRLAtomSelector_TestCase.java │ │ ├── owlapi │ │ │ ├── LoadOBOOntologyDocument_TestCase.java │ │ │ ├── OwlLiteralLangTagCasing_TestCase.java │ │ │ ├── ProjectAnnotationAssertionAxiomsBySubjectIndexImpl_TestCase.java │ │ │ └── change │ │ │ │ ├── RevisionManagerImpl_TestCase.java │ │ │ │ └── Revision_TestCase.java │ │ ├── permissions │ │ │ └── GetProjectPermissionsActionHandler_TestCase.java │ │ ├── persistence │ │ │ ├── EmailAddressReadConverterTestCase.java │ │ │ ├── EmailAddressWriteConverterTestCase.java │ │ │ ├── MilestoneReadConverter_TestCase.java │ │ │ ├── MilestoneWriteConverter_TestCase.java │ │ │ ├── MongoTestUtils.java │ │ │ ├── OWLEntityConverter_TestCase.java │ │ │ ├── OWLEntityReadConverter_TestCase.java │ │ │ ├── OWLEntityWriteConverter_TestCase.java │ │ │ ├── ProjectIdReadConverterTestCase.java │ │ │ ├── ProjectIdWriteConverterTestCase.java │ │ │ ├── SaltReadConverterTestCase.java │ │ │ ├── SaltWriteConverterTestCase.java │ │ │ ├── SaltedPasswordDigestReadConverterTestCase.java │ │ │ ├── SaltedPasswordDigestWriteConverterTestCase.java │ │ │ ├── UserIdReadConverterTestCase.java │ │ │ └── UserIdWriteConverterTestCase.java │ │ ├── perspective │ │ │ ├── NodeProperties_Serialization_TestCase.java │ │ │ ├── ParentNode_Serialization_TestCase.java │ │ │ ├── PerspectiveDescriptorRepository_TestCase.java │ │ │ ├── PerspectiveDescriptor_Serialization_TestCase.java │ │ │ ├── PerspectiveDescriptorsRecord_Serialization_TestCase.java │ │ │ ├── PerspectiveLayoutRecord_Serialization_TestCase.java │ │ │ ├── PerspectiveLayoutRepository_TestCase.java │ │ │ ├── TerminalNodeId_Serialization_TestCase.java │ │ │ └── TerminalNode_Serialization_TestCase.java │ │ ├── place │ │ │ └── PlaceUrl_TestCase.java │ │ ├── project │ │ │ ├── BuiltInPrefixDeclarationsLoader_TestCase.java │ │ │ ├── CreateNewProjectActionHandler_TestCase.java │ │ │ ├── DefaultOntologyIdManagerImpl_TestCase.java │ │ │ ├── FileDocumentSourceMatcher.java │ │ │ ├── GetProjectDetailsActionHandler_TestCase.java │ │ │ ├── Ontology_TestCase.java │ │ │ ├── PrefixDeclarationsCsvParser_TestCase.java │ │ │ ├── PrefixDeclarationsStore_IT.java │ │ │ ├── ProjectAccessManagerImpl_IT.java │ │ │ ├── ProjectDetailsRepository_IT.java │ │ │ ├── RecentProjectRecord_TestCase.java │ │ │ ├── SingleDocumentProjectSourcesExtractor_TestCase.java │ │ │ ├── UploadedProjectSourcesExtractor_TestCase.java │ │ │ ├── ZipArchiveProjectSourcesExtractor_TestCase.java │ │ │ └── chg │ │ │ │ ├── OntologyChangeTranslatorVisitor_TestCase.java │ │ │ │ └── OntologyChangeTranslator_TestCase.java │ │ ├── projectsettings │ │ │ ├── AllProjectSettings_Serialization_TestCase.java │ │ │ ├── GetProjectSettingsActionHandler_TestCase.java │ │ │ └── SetProjectSettingsActionHandler_TestCase.java │ │ ├── renderer │ │ │ ├── AnnotationPropertyComparatorImpl_TestCase.java │ │ │ ├── IRIOrdinalProvider_TestCase.java │ │ │ ├── ImageLinkRendererTestCase.java │ │ │ ├── MarkdownLiteralRendererTestCase.java │ │ │ ├── NullDeprecatedEntityChecker_TestCase.java │ │ │ └── NullHighlightedEntityChecker_TestCase.java │ │ ├── revision │ │ │ ├── GetHeadRevisionNumberActionHandler_TestCase.java │ │ │ ├── GetRevisionSummariesActionHandler_TestCase.java │ │ │ ├── ProjectChangesManager_IT.java │ │ │ └── RevisionStoreImpl_IT.java │ │ ├── search │ │ │ ├── EntitySearchFilterRepositoryImpl_IT.java │ │ │ └── EntitySearchFilter_Serialization_TestCase.java │ │ ├── session │ │ │ └── WebProtegeSessionImplAttribute_TestCase.java │ │ ├── sharing │ │ │ ├── GetProjectSharingSettingsActionHandler_TestCase.java │ │ │ └── SetProjectSharingSettingsActionHandler_TestCase.java │ │ ├── shortform │ │ │ ├── DefaultShortFormAnnotationPropertyIRIs_TestCase.java │ │ │ └── WebProtegeOntologyIRIShortFormProvider_TestCase.java │ │ ├── tag │ │ │ ├── EntityTagsRepositoryImpl_TestCase.java │ │ │ └── TagRepositoryImpl_IT.java │ │ ├── trigger │ │ │ └── TriggerRunner_TestCase.java │ │ ├── user │ │ │ ├── CreateUserAccountActionHandler_TestCase.java │ │ │ ├── GetUserIdsActionHandler_TestCase.java │ │ │ ├── LogOutUserActionHandler_TestCase.java │ │ │ ├── UserActivityManager_IT.java │ │ │ ├── UserActivityRecord_TestCase.java │ │ │ ├── UserRecordConverter_TestCase.java │ │ │ ├── UserRecordRepository_TestCase.java │ │ │ └── UserRecord_TestCase.java │ │ ├── util │ │ │ ├── AlphaNumericStringComparator_TestCase.java │ │ │ ├── EntityDeleter_TestCase.java │ │ │ ├── OWLOntologyChangeDataVisitorAdapter_TestCase.java │ │ │ ├── ReferenceFinder_TestCase.java │ │ │ ├── TempFileFactoryImpl_TestCase.java │ │ │ ├── ZipFileExtractor_TestCase.java │ │ │ └── ZipInputStreamChecker_TestCase.java │ │ ├── viz │ │ │ ├── AnyEdgeCriteria_SerializationTestCase.java │ │ │ ├── AnyInstanceOfEdgeCriteria_SerializationTestCase.java │ │ │ ├── AnyRelationshipEdgeCriteria_SerializationTestCase.java │ │ │ ├── AnySubClassOfEdgeCriteria_SerializationTestCase.java │ │ │ ├── CompositeEdgeCriteria_SerializationTestCase.java │ │ │ ├── EntityGraphBuilder_TestCase.java │ │ │ ├── EntityGraphFilter_SerializationTestCase.java │ │ │ ├── EntityGraphSettingsRepositoryImpl_IT.java │ │ │ ├── HeadNodeMatchesCriteria_SerializationTestCase.java │ │ │ ├── NegatedEdgeCriteria_SerializationTestCase.java │ │ │ ├── RelationshipEdgePropertyEqualsCriteria_SerializationTestCase.java │ │ │ └── TailNodeMatchesCriteria_SerializationTestCase.java │ │ ├── watches │ │ │ ├── WatchRecordRepository_IT.java │ │ │ └── Watch_TestCase.java │ │ └── webhook │ │ │ ├── SlackWebhookRepository_IT.java │ │ │ └── WebhookRepositoryImpl_IT.java │ │ └── shared │ │ ├── form │ │ ├── data │ │ │ └── GridRowDataDtoComparatorFactory_TestCase.java │ │ └── field │ │ │ ├── ChoiceDescriptor_Serialization_TestCase.java │ │ │ ├── ChoiceListSourceDescriptor_Serialization_TestCase.java │ │ │ ├── FormRegionOrdering_Serialization_TestCase.java │ │ │ ├── MultiChoiceControlDescriptor_Serialization_TestCase.java │ │ │ ├── SingleChoiceControlDescriptor_Serialization_TestCase.java │ │ │ └── SubFormControlDescriptor_IT.java │ │ ├── frame │ │ ├── PlainAnnotationPropertyFrame_Serialization_TestCase.java │ │ ├── PlainClassFrame_Serialization_TestCase.java │ │ ├── PlainDataPropertyFrame_Serialization_TestCase.java │ │ ├── PlainIndividualFrame_Serialization_TestCase.java │ │ ├── PlainObjectPropertyFrame_Serialization_TestCase.java │ │ ├── PropertyAnnotationValue_Serialization_TestCase.java │ │ ├── PropertyClassValue_Serialization_TestCase.java │ │ ├── PropertyDatatypeValue_Serialization_TestCase.java │ │ ├── PropertyIndividual_Serialization_TestCase.java │ │ └── PropertyLiteralValue_Serialization_TestCase.java │ │ ├── match │ │ ├── AnnotationCriteria_Serialization_TestCase.java │ │ ├── AnnotationValueCriteria_Serialization_TestCase.java │ │ ├── JsonSerializationTestUtil.java │ │ ├── LangTagCriteria_Serialization_TestCase.java │ │ ├── LexicalValueCriteria_Serialization_TestCase.java │ │ ├── RootCriteria_Serialization_TestCase.java │ │ ├── criteria │ │ │ ├── AnyRelationshipPropertyCriteria_IT.java │ │ │ ├── AnyRelationshipValueCriteria_IT.java │ │ │ ├── EntityRelationshipCriteria_IT.java │ │ │ ├── RelationshipPropertyEqualsCriteria_IT.java │ │ │ ├── RelationshipValueEqualsEntityCriteria_IT.java │ │ │ ├── RelationshipValueEqualsLiteralCriteria_IT.java │ │ │ └── RelationshipValueMatchesCriteria_IT.java │ │ └── tag │ │ │ └── Tag_Serialization_TestCase.java │ │ ├── project │ │ └── ProjectDetails_Serialization_TestCase.java │ │ └── shortform │ │ ├── DictionaryLanguage_Serialization_TestCase.java │ │ └── ShortForm_Serialization_TestCase.java │ └── resources │ └── ontologies │ └── obo │ └── go.fragment.obo ├── webprotege-server-lucene ├── pom.xml └── src │ ├── main │ └── java │ │ └── edu │ │ └── stanford │ │ └── bmir │ │ └── protege │ │ └── web │ │ └── server │ │ ├── index │ │ └── DeprecatedEntitiesIndexLuceneImpl.java │ │ └── shortform │ │ ├── AnnotationAssertionAxiomsModule.java │ │ ├── DeprecatedEntitiesByEntityIndexLuceneImpl.java │ │ ├── DictionaryLanguageFieldWriter.java │ │ ├── EntityAnnotationAssertionsDocumentAugmenter.java │ │ ├── EntityBasedSimilarity.java │ │ ├── EntityBuiltInStatusDocumentAugmenter.java │ │ ├── EntityDictionaryLanguageValues.java │ │ ├── EntityDocumentAugmenter.java │ │ ├── EntityDocumentFieldNames.java │ │ ├── EntityLocalNameDocumentAugmenter.java │ │ ├── EntityOboIdDocumentAugmenter.java │ │ ├── EntityPrefixedNameDocumentAugmenter.java │ │ ├── EntitySearchFilterMatcher.java │ │ ├── EntitySearchFilterMatchersFactory.java │ │ ├── EntityShortForms.java │ │ ├── FieldNameTranslator.java │ │ ├── FieldNameTranslatorImpl.java │ │ ├── IndexingAnalyzerFactory.java │ │ ├── IndexingAnalyzerWrapper.java │ │ ├── LuceneDictionaryLanguageValuesMatcher.java │ │ ├── LuceneEntityDocument.java │ │ ├── LuceneEntityDocumentTranslator.java │ │ ├── LuceneEntityDocumentTranslatorImpl.java │ │ ├── LuceneIndex.java │ │ ├── LuceneIndexImpl.java │ │ ├── LuceneIndexUpdater.java │ │ ├── LuceneIndexUpdaterImpl.java │ │ ├── LuceneIndexWriter.java │ │ ├── LuceneIndexWriterImpl.java │ │ ├── LuceneIndexesDirectory.java │ │ ├── LuceneModule.java │ │ ├── LuceneMultiLingualDictionaryUpdater.java │ │ ├── LuceneQueryFactory.java │ │ ├── LuceneSearchStringTokenizer.java │ │ ├── MaxGramSize.java │ │ ├── MinGramSize.java │ │ ├── MultiLingualDictionaryLuceneImpl.java │ │ ├── MultiLingualShortFormDictionaryLuceneImpl.java │ │ ├── MultiLingualShortFormIndexLuceneImpl.java │ │ ├── ProjectIdModule.java │ │ ├── ProjectLuceneDirectoryPathSupplier.java │ │ ├── QueryAnalyzerFactory.java │ │ ├── SearchFiltersDocumentAugmenter.java │ │ └── SearchableMultiLingualShortFormDictionaryLuceneImpl.java │ └── test │ └── java │ └── edu │ └── stanford │ └── bmir │ └── protege │ └── web │ └── server │ └── shortform │ ├── IndexingAnalyzerWrapper_TestCase.java │ ├── ProjectLuceneDirectoryPathSupplier_TestCase.java │ └── QueryAnalyzerFactory_TestCase.java ├── webprotege-server ├── pom.xml └── src │ ├── main │ ├── java │ │ └── edu │ │ │ └── stanford │ │ │ └── bmir │ │ │ └── protege │ │ │ └── web │ │ │ └── server │ │ │ ├── api │ │ │ ├── ActionExecutor.java │ │ │ ├── ApiKeyBinder.java │ │ │ ├── ApiKeyFactory.java │ │ │ ├── ApiModule.java │ │ │ ├── ApiRootResource.java │ │ │ ├── AuthenticationConstants.java │ │ │ ├── AuthenticationFilter.java │ │ │ ├── ErrorInfo.java │ │ │ ├── JacksonContextResolver.java │ │ │ ├── ResponseUtil.java │ │ │ ├── UserIdBinder.java │ │ │ ├── UserIdFactory.java │ │ │ ├── axioms │ │ │ │ ├── PostedAxiomsActionExecutor.java │ │ │ │ ├── PostedAxiomsLoadFailureResponse.java │ │ │ │ ├── PostedAxiomsLoadResponse.java │ │ │ │ ├── PostedAxiomsLoadSuccessResponse.java │ │ │ │ └── PostedAxiomsLoader.java │ │ │ ├── exception │ │ │ │ ├── PermissionDeniedExceptionMapper.java │ │ │ │ └── UnknownProjectExceptionMapper.java │ │ │ └── resources │ │ │ │ ├── AxiomsResource.java │ │ │ │ ├── DeleteAxiomsResource.java │ │ │ │ ├── FormResource.java │ │ │ │ ├── FormsResource.java │ │ │ │ ├── ProjectResource.java │ │ │ │ ├── ProjectSettingsResource.java │ │ │ │ ├── ProjectsResource.java │ │ │ │ └── RevisionsResource.java │ │ │ ├── app │ │ │ ├── ClientObjectEncoder.java │ │ │ ├── ClientObjectWriter.java │ │ │ ├── ConsoleInput.java │ │ │ ├── GwtResourceCachingStrategy.java │ │ │ ├── ProjectComponentFactoryImpl.java │ │ │ ├── ResourceCachingManager.java │ │ │ ├── ResourceCachingStrategy.java │ │ │ ├── ServerComponent.java │ │ │ ├── ServerModule.java │ │ │ ├── ServerSingleton.java │ │ │ ├── UserInSessionEncoder.java │ │ │ ├── WebProtegeRemoteServiceServlet.java │ │ │ ├── WebProtegeServletContextListener.java │ │ │ └── WebProtegeSessionListener.java │ │ │ ├── dispatch │ │ │ └── DispatchServlet.java │ │ │ ├── download │ │ │ ├── FileDownloadParameters.java │ │ │ ├── FileTransferTask.java │ │ │ ├── ProjectDownloadService.java │ │ │ └── ProjectDownloadServlet.java │ │ │ ├── filter │ │ │ └── WebProtegeWebAppFilter.java │ │ │ ├── logging │ │ │ ├── DefaultLogger.java │ │ │ ├── RequestFormatter.java │ │ │ └── WebProtegeLogger.java │ │ │ ├── project │ │ │ └── ProjectCacheManager.java │ │ │ ├── session │ │ │ └── WebProtegeSessionImpl.java │ │ │ └── upload │ │ │ └── FileUploadServlet.java │ ├── jettyconf │ │ └── context.xml │ ├── resources │ │ ├── builtin-perspective-data │ │ │ ├── Classes.json │ │ │ ├── Comments.json │ │ │ ├── History.json │ │ │ ├── Individuals.json │ │ │ ├── OWL Classes.json │ │ │ ├── OWL Properties.json │ │ │ ├── Properties.json │ │ │ └── Query.json │ │ └── logback.xml │ ├── tomcatconf │ │ └── context.xml │ └── webapp │ │ ├── WEB-INF │ │ └── web.xml │ │ ├── WebProtege.jsp │ │ ├── configuration-error.jsp │ │ ├── css │ │ └── WebProtege.css │ │ ├── favicon.png │ │ ├── forbidden.jsp │ │ ├── html │ │ ├── privacy.html │ │ └── termsofuse.html │ │ ├── images │ │ ├── Protege-Blender@2x.png │ │ ├── Protege-Blender@300w.png │ │ ├── Protege-Blender@600w.png │ │ ├── home-icon.svg │ │ ├── protege-blender.png │ │ ├── protege-blender.svg │ │ └── protege-logo-large.png │ │ └── js │ │ ├── autotrack │ │ └── autotrack.js │ │ ├── dagre │ │ └── dagre.js │ │ ├── graphlib │ │ └── graphlib.js │ │ ├── polyfill │ │ └── pathseg │ │ │ └── pathseg.js │ │ └── viz │ │ ├── full.render.js │ │ └── viz.js │ └── test │ ├── java │ └── edu │ │ └── stanford │ │ └── bmir │ │ └── protege │ │ └── web │ │ └── server │ │ ├── WebProtegeSessionListener_TestCase.java │ │ ├── app │ │ └── UserInSessionEncoder_TestCase.java │ │ ├── download │ │ └── FileDownloadParametersTestCase.java │ │ ├── perspective │ │ └── BuiltInPerspective_TestCase.java │ │ └── session │ │ └── WebProtegeSessionImpl_TestCase.java │ └── resources │ └── edu │ └── stanford │ └── bmir │ └── protege │ └── web │ └── server │ └── app │ └── UserInSession.json ├── webprotege-shared-core ├── pom.xml └── src │ ├── main │ └── java │ │ └── edu │ │ └── stanford │ │ └── bmir │ │ └── protege │ │ └── web │ │ └── shared │ │ ├── access │ │ ├── ActionId.java │ │ ├── BuiltInAction.java │ │ ├── BuiltInRole.java │ │ └── RoleId.java │ │ ├── annotations │ │ ├── GwtSerializationConstructor.java │ │ └── WebProtegePropertiesDocumentation.java │ │ ├── api │ │ ├── ApiKey.java │ │ ├── ApiKeyId.java │ │ └── ApiKeyInfo.java │ │ ├── app │ │ ├── AccountCreationSetting.java │ │ ├── ApplicationLocation.java │ │ ├── ApplicationScheme.java │ │ ├── ApplicationSettings.java │ │ ├── NotificationEmailsSetting.java │ │ ├── ProjectCreationSetting.java │ │ ├── ProjectUploadSetting.java │ │ └── WebProtegePropertyName.java │ │ ├── auth │ │ ├── Md5DigestAlgorithmProvider.java │ │ ├── Md5MessageDigestAlgorithm.java │ │ ├── MessageDigestAlgorithm.java │ │ ├── PasswordDigestAlgorithm.java │ │ ├── Salt.java │ │ ├── SaltProvider.java │ │ └── SaltedPasswordDigest.java │ │ ├── form │ │ └── ExpansionState.java │ │ ├── inject │ │ ├── ApplicationSingleton.java │ │ └── ProjectSingleton.java │ │ ├── project │ │ ├── HasProjectId.java │ │ ├── ProjectId.java │ │ ├── ProjectIdFormatException.java │ │ └── WithProjectId.java │ │ ├── revision │ │ ├── RevisionNumber.java │ │ └── RevisionSummary.java │ │ ├── user │ │ ├── EmailAddress.java │ │ ├── UserDetails.java │ │ └── UserId.java │ │ └── util │ │ └── UUIDUtil.java │ └── test │ └── java │ └── edu │ └── stanford │ └── bmir │ └── protege │ └── web │ └── shared │ ├── access │ ├── ActionId_Json_TestCase.java │ ├── ActionId_TestCase.java │ ├── RoleId_Json_TestCase.java │ └── RoleId_TestCase.java │ ├── api │ ├── ApiKeyId_TestCase.java │ ├── ApiKeyInfo_TestCase.java │ └── ApiKey_TestCase.java │ ├── app │ └── ApplicationLocation_TestCase.java │ ├── auth │ ├── Md5MessageDigestAlgorithm_TestCase.java │ ├── PasswordDigestAlgorithm_ITestCase.java │ ├── PasswordDigestAlgorithm_TestCase.java │ ├── Salt_TestCase.java │ └── SaltedPasswordDigest_TestCase.java │ ├── project │ ├── ProjectId_Json_TestCase.java │ └── ProjectId_TestCase.java │ ├── revision │ └── RevisionSummary_TestCase.java │ ├── user │ ├── EmailAddress_Json_TestCase.java │ ├── EmailAddress_TestCase.java │ ├── UserDetails_TestCase.java │ ├── UserId_Json_TestCase.java │ └── UserId_TestCase.java │ └── util │ └── UUIDUtil_TestCase.java └── webprotege-shared ├── pom.xml └── src ├── main └── java │ └── edu │ └── stanford │ └── bmir │ └── protege │ └── web │ ├── client │ └── form │ │ └── LanguageMapEntry.java │ ├── server │ └── api │ │ ├── TimestampDeserializer.java │ │ └── TimestampSerializer.java │ └── shared │ ├── DataFactory.java │ ├── DeserializationUtil.java │ ├── DirtyChangedEvent.java │ ├── DirtyChangedHandler.java │ ├── Filter.java │ ├── HasActive.java │ ├── HasBrowserText.java │ ├── HasChangedValue.java │ ├── HasDataFactory.java │ ├── HasDeleteable.java │ ├── HasDirty.java │ ├── HasDirtyChangedHandlers.java │ ├── HasDisplayName.java │ ├── HasDispose.java │ ├── HasEntity.java │ ├── HasEntityBrowserText.java │ ├── HasEntityDataProvider.java │ ├── HasIRIPrefix.java │ ├── HasLabel.java │ ├── HasLexicalForm.java │ ├── HasLiterals.java │ ├── HasObject.java │ ├── HasOperationFailedMessage.java │ ├── HasPermissionDeniedMessage.java │ ├── HasPrimitives.java │ ├── HasResult.java │ ├── HasSignature.java │ ├── HasStateChangedHandler.java │ ├── HasSubject.java │ ├── HasUIDescription.java │ ├── HasUnexpectedErrorMessage.java │ ├── HasUserId.java │ ├── HasWellFormed.java │ ├── PortletId.java │ ├── PrimitiveType.java │ ├── StateChangedHandler.java │ ├── TimeUtil.java │ ├── app │ ├── GetApplicationSettingsAction.java │ ├── GetApplicationSettingsResult.java │ ├── SetApplicationSettingsAction.java │ ├── SetApplicationSettingsResult.java │ ├── StatusCodes.java │ ├── UserInSession.java │ └── UserInSessionEncoding.java │ ├── auth │ ├── AbstractAuthenticationAction.java │ ├── AbstractAuthenticationResult.java │ ├── AuthenticateUserAction.java │ ├── AuthenticateUserResult.java │ ├── AuthenticationActionFactory.java │ ├── AuthenticationResponse.java │ ├── ChallengeMessage.java │ ├── ChangePasswordAction.java │ ├── ChangePasswordActionFactory.java │ ├── ChangePasswordResult.java │ ├── ChapResponse.java │ ├── ChapResponseDigestAlgorithm.java │ ├── ChapSession.java │ ├── ChapSessionId.java │ ├── GetChapSessionAction.java │ ├── GetChapSessionResult.java │ ├── PerformLoginAction.java │ ├── PerformLoginActionFactory.java │ ├── PerformLoginResult.java │ └── SignInDetails.java │ ├── axiom │ ├── AxiomTypeGroup.java │ └── OWLAxiomData.java │ ├── bulkop │ ├── AnnotationSimpleMatchingCriteria.java │ ├── DeleteAnnotationsAction.java │ ├── DeleteAnnotationsResult.java │ ├── EditAnnotationsAction.java │ ├── EditAnnotationsResult.java │ ├── HasCommitMessage.java │ ├── MoveEntitiesToParentAction.java │ ├── MoveEntitiesToParentResult.java │ ├── NewAnnotationData.java │ ├── Operation.java │ ├── SetAnnotationValueAction.java │ └── SetAnnotationValueResult.java │ ├── change │ ├── GetProjectChangesAction.java │ ├── GetProjectChangesResult.java │ ├── GetWatchedEntityChangesAction.java │ ├── GetWatchedEntityChangesResult.java │ ├── HasProjectChanges.java │ ├── ProjectChange.java │ ├── ProjectChangeTimestampComparator.java │ ├── RevertRevisionAction.java │ └── RevertRevisionResult.java │ ├── chgpwd │ ├── ChangePasswordData.java │ ├── ResetPasswordAction.java │ ├── ResetPasswordData.java │ ├── ResetPasswordResult.java │ └── ResetPasswordResultCode.java │ ├── collection │ ├── CollectionDetails.java │ ├── CollectionId.java │ ├── CollectionItem.java │ ├── CollectionItemData.java │ ├── CreateCollectionItemsAction.java │ ├── CreateCollectionItemsResult.java │ ├── GetCollectionItemsAction.java │ └── GetCollectionItemsResult.java │ ├── color │ └── Color.java │ ├── crud │ ├── ConditionalIriPrefix.java │ ├── EntityCrudKit.java │ ├── EntityCrudKitId.java │ ├── EntityCrudKitPrefixSettings.java │ ├── EntityCrudKitSettings.java │ ├── EntityCrudKitSuffixSettings.java │ ├── EntityShortForm.java │ ├── GetEntityCrudKitSettingsAction.java │ ├── GetEntityCrudKitSettingsResult.java │ ├── GetEntityCrudKitsAction.java │ ├── GetEntityCrudKitsResult.java │ ├── HasKitId.java │ ├── IRIPrefixUpdateStrategy.java │ ├── SetEntityCrudKitSettingsAction.java │ ├── SetEntityCrudKitSettingsResult.java │ ├── oboid │ │ ├── OBOIdSuffixKit.java │ │ ├── OboIdSuffixSettings.java │ │ └── UserIdRange.java │ ├── supplied │ │ ├── SuppliedNameSuffixKit.java │ │ ├── SuppliedNameSuffixSettings.java │ │ └── WhiteSpaceTreatment.java │ └── uuid │ │ ├── UuidFormat.java │ │ ├── UuidSuffixKit.java │ │ └── UuidSuffixSettings.java │ ├── csv │ ├── CSVColumnDescriptor.java │ ├── CSVGrid.java │ ├── CSVImportDescriptor.java │ ├── CSVRow.java │ ├── CSVRowImportType.java │ ├── ColumnType.java │ ├── DocumentId.java │ ├── GetCSVGridAction.java │ ├── GetCSVGridResult.java │ ├── ImportCSVFileAction.java │ └── ImportCSVFileResult.java │ ├── diff │ ├── DiffElement.java │ ├── DiffElementOperationComparator.java │ └── DiffOperation.java │ ├── dispatch │ ├── AbstractHasEventListResult.java │ ├── AbstractHasProjectAction.java │ ├── AbstractHasProjectIdAndSubject.java │ ├── AbstractHasSubjectAction.java │ ├── Action.java │ ├── ActionExecutionException.java │ ├── ActionExecutionResult.java │ ├── BatchAction.java │ ├── BatchResult.java │ ├── DispatchService.java │ ├── DispatchServiceAsync.java │ ├── DispatchServiceResultContainer.java │ ├── GetObjectAction.java │ ├── GetObjectResult.java │ ├── InvalidRequestException.java │ ├── InvocationExceptionTolerantAction.java │ ├── ProjectAction.java │ ├── Result.java │ ├── UpdateObjectAction.java │ ├── UpdateObjectResult.java │ └── actions │ │ ├── AbstractCreateEntitiesAction.java │ │ ├── AbstractCreateEntityResult.java │ │ ├── CreateAnnotationPropertiesAction.java │ │ ├── CreateAnnotationPropertiesResult.java │ │ ├── CreateClassesAction.java │ │ ├── CreateClassesResult.java │ │ ├── CreateDataPropertiesAction.java │ │ ├── CreateDataPropertiesResult.java │ │ ├── CreateEntitiesInHierarchyAction.java │ │ ├── CreateEntitiesInHierarchyResult.java │ │ ├── CreateNamedIndividualsAction.java │ │ ├── CreateNamedIndividualsResult.java │ │ ├── CreateObjectPropertiesAction.java │ │ ├── CreateObjectPropertiesResult.java │ │ ├── GetClassFrameAction.java │ │ ├── GetCurrentUserInSessionAction.java │ │ ├── GetCurrentUserInSessionResult.java │ │ ├── GetNamedIndividualFrameAction.java │ │ ├── GetNamedIndividualFrameResult.java │ │ ├── GetOntologyAnnotationsAction.java │ │ ├── GetOntologyAnnotationsResult.java │ │ ├── GetRootOntologyIdAction.java │ │ ├── GetRootOntologyIdResult.java │ │ ├── SetOntologyAnnotationsAction.java │ │ ├── SetOntologyAnnotationsResult.java │ │ ├── UpdateClassFrameAction.java │ │ └── UpdateNamedIndividualFrameAction.java │ ├── download │ ├── DownloadFormatExtension.java │ └── ProjectDownloadConstants.java │ ├── entity │ ├── ChangeEntityIRIAction.java │ ├── ChangeEntityIRIResult.java │ ├── CommentedEntityData.java │ ├── DeclarationParser.java │ ├── DeleteEntitiesAction.java │ ├── DeleteEntitiesResult.java │ ├── Entity.java │ ├── EntityDisplay.java │ ├── EntityLookupRequest.java │ ├── EntityLookupResult.java │ ├── EntityNameCharType.java │ ├── EntityNameUtils.java │ ├── EntityNode.java │ ├── EntityNodeIndex.java │ ├── EntityShortFormsParser.java │ ├── EntityTypeGroup.java │ ├── FreshEntityIri.java │ ├── GetDeprecatedEntitiesAction.java │ ├── GetDeprecatedEntitiesResult.java │ ├── IRIData.java │ ├── LookupEntitiesAction.java │ ├── LookupEntitiesResult.java │ ├── MergeEntitiesAction.java │ ├── MergeEntitiesResult.java │ ├── MergedEntityTreatment.java │ ├── OWLAnnotationPropertyData.java │ ├── OWLClassData.java │ ├── OWLDataPropertyData.java │ ├── OWLDatatypeData.java │ ├── OWLEntityData.java │ ├── OWLEntityDataVisitorEx.java │ ├── OWLLiteralData.java │ ├── OWLNamedIndividualData.java │ ├── OWLObjectPropertyData.java │ ├── OWLPrimitiveData.java │ ├── OWLPrimitiveDataVisitor.java │ ├── OWLPrimitiveDataVisitorAdapter.java │ ├── OWLPropertyData.java │ ├── ObjectData.java │ └── RecordEntityChoiceLookupResult.java │ ├── event │ ├── AnnotationPropertyFrameChangedEvent.java │ ├── AnnotationPropertyFrameChangedEventHandler.java │ ├── BrowserTextChangedEvent.java │ ├── BrowserTextChangedHandler.java │ ├── ClassFrameChangedEvent.java │ ├── ClassFrameChangedEventHandler.java │ ├── DataPropertyFrameChangedEvent.java │ ├── DataPropertyFrameChangedEventHandler.java │ ├── DatatypeFrameChangedEvent.java │ ├── DatatypeFrameChangedEventHandler.java │ ├── EntityDeprecatedChangedEvent.java │ ├── EntityDeprecatedChangedHandler.java │ ├── EntityFrameChangedEvent.java │ ├── EventList.java │ ├── EventTag.java │ ├── GetProjectEventsAction.java │ ├── GetProjectEventsAction_CustomFieldSerializer.java │ ├── GetProjectEventsResult.java │ ├── GetProjectEventsResult_CustomFieldSerializer.java │ ├── HandlerRegistrationManager.java │ ├── HasEventHandlerManagement.java │ ├── HasEventList.java │ ├── HasEvents.java │ ├── NamedIndividualFrameChangedEvent.java │ ├── NamedIndividualFrameChangedEventHandler.java │ ├── ObjectPropertyFrameChangedEvent.java │ ├── ObjectPropertyFrameChangedEventHandler.java │ ├── OntologyBrowserTextChangedEvent.java │ ├── OntologyBrowserTextChangedEventHandler.java │ ├── OntologyFrameChangedEvent.java │ ├── OntologyFrameChangedEventHandler.java │ ├── ProjectChangedEvent.java │ ├── ProjectChangedHandler.java │ ├── ProjectEvent.java │ ├── ProjectEventList.java │ ├── ProjectMovedFromTrashEvent.java │ ├── ProjectMovedFromTrashHandler.java │ ├── ProjectMovedToTrashEvent.java │ ├── ProjectMovedToTrashHandler.java │ ├── UserStartedViewingProjectHandler.java │ ├── UserStartingViewingProjectEvent.java │ ├── UserStoppedViewingProjectEvent.java │ ├── UserStoppedViewingProjectHandler.java │ ├── WebProtegeEvent.java │ ├── WebProtegeEventBus.java │ ├── WebProtegeEventWrapper.java │ └── WebProtegeEventWrapperHandler.java │ ├── filter │ ├── Filter.java │ ├── FilterId.java │ ├── FilterSet.java │ └── FilterSetting.java │ ├── form │ ├── CopyFormDescriptorsFromProjectAction.java │ ├── CopyFormDescriptorsFromProjectResult.java │ ├── DeleteFormAction.java │ ├── DeleteFormResult.java │ ├── EntityFormDescriptor.java │ ├── EntityFormSelector.java │ ├── FilterState.java │ ├── FormDescriptor.java │ ├── FormDescriptorDto.java │ ├── FormFieldBindingMissingException.java │ ├── FormGroup.java │ ├── FormGroupId.java │ ├── FormId.java │ ├── FormPageRequest.java │ ├── FormRegionPageRequest.java │ ├── FormSubjectFactoryDescriptor.java │ ├── FormSubjectFactoryDescriptorMissingException.java │ ├── GetEntityFormDescriptorAction.java │ ├── GetEntityFormDescriptorResult.java │ ├── GetEntityFormsAction.java │ ├── GetEntityFormsResult.java │ ├── GetFormDescriptorAction.java │ ├── GetFormDescriptorResult.java │ ├── GetFreshFormIdAction.java │ ├── GetFreshFormIdResult.java │ ├── GetProjectFormDescriptorsAction.java │ ├── GetProjectFormDescriptorsResult.java │ ├── GridColumnBindingMissingException.java │ ├── HasFilterState.java │ ├── HasFormFieldId.java │ ├── HasFormRegionPagedChangedHandler.java │ ├── OWLEntity2FormControlDataVisitor.java │ ├── OWLPrimitive2FormControlDataConverter.java │ ├── RegionPageChangedHandler.java │ ├── SetEntityFormDataResult.java │ ├── SetEntityFormDescriptorAction.java │ ├── SetEntityFormDescriptorResult.java │ ├── SetEntityFormsDataAction.java │ ├── SetFormDataAction.java │ ├── SetFormDataResult.java │ ├── SetProjectFormDescriptorsAction.java │ ├── SetProjectFormDescriptorsResult.java │ ├── UpdateFormDescriptorAction.java │ ├── UpdateFormDescriptorResult.java │ ├── data │ │ ├── ComplexFormControlValue.java │ │ ├── CompositePrimitiveFormControlDataMatchCriteria.java │ │ ├── EntityFormControlData.java │ │ ├── EntityFormControlDataDto.java │ │ ├── EntityFormControlDataMatchCriteria.java │ │ ├── EntityNameControlData.java │ │ ├── EntityNameControlDataDto.java │ │ ├── FormControlData.java │ │ ├── FormControlDataDto.java │ │ ├── FormControlDataDtoVisitorEx.java │ │ ├── FormControlDataVisitor.java │ │ ├── FormControlDataVisitorEx.java │ │ ├── FormData.java │ │ ├── FormDataDto.java │ │ ├── FormEntitySubject.java │ │ ├── FormEntitySubjectDto.java │ │ ├── FormFieldData.java │ │ ├── FormFieldDataDto.java │ │ ├── FormIriSubject.java │ │ ├── FormIriSubjectDto.java │ │ ├── FormRegionFilter.java │ │ ├── FormSubject.java │ │ ├── FormSubjectDto.java │ │ ├── GridCellData.java │ │ ├── GridCellDataDto.java │ │ ├── GridControlData.java │ │ ├── GridControlDataDto.java │ │ ├── GridRowData.java │ │ ├── GridRowDataDto.java │ │ ├── ImageControlData.java │ │ ├── ImageControlDataDto.java │ │ ├── IriFormControlData.java │ │ ├── IriFormControlDataDto.java │ │ ├── LiteralFormControlData.java │ │ ├── LiteralFormControlDataDto.java │ │ ├── LiteralFormControlDataMatchCriteria.java │ │ ├── MultiChoiceControlData.java │ │ ├── MultiChoiceControlDataDto.java │ │ ├── NumberControlData.java │ │ ├── NumberControlDataDto.java │ │ ├── PrimitiveFormControlData.java │ │ ├── PrimitiveFormControlDataDto.java │ │ ├── PrimitiveFormControlDataMatchCriteria.java │ │ ├── PrimitiveFormControlDataMatchCriteriaVisitor.java │ │ ├── SimpleFormControlValue.java │ │ ├── SingleChoiceControlData.java │ │ ├── SingleChoiceControlDataDto.java │ │ ├── TextControlData.java │ │ └── TextControlDataDto.java │ └── field │ │ ├── BoundControlDescriptor.java │ │ ├── ChoiceDescriptor.java │ │ ├── ChoiceDescriptorDto.java │ │ ├── ChoiceListSourceDescriptor.java │ │ ├── CompositeFieldDescriptorEntry.java │ │ ├── DynamicChoiceListSourceDescriptor.java │ │ ├── EntityNameControlDescriptor.java │ │ ├── EntityNameControlDescriptorDto.java │ │ ├── FieldRun.java │ │ ├── FixedChoiceListSourceDescriptor.java │ │ ├── FormControlDescriptor.java │ │ ├── FormControlDescriptorDto.java │ │ ├── FormControlDescriptorDtoVisitor.java │ │ ├── FormControlDescriptorVisitor.java │ │ ├── FormFieldDescriptor.java │ │ ├── FormFieldDescriptorDto.java │ │ ├── FormFieldId.java │ │ ├── FormRegionId.java │ │ ├── FormRegionOrdering.java │ │ ├── FormRegionOrderingDirection.java │ │ ├── FormRegionPresenter.java │ │ ├── GridColumnDescriptor.java │ │ ├── GridColumnDescriptorDto.java │ │ ├── GridColumnId.java │ │ ├── GridControlDescriptor.java │ │ ├── GridControlDescriptorDto.java │ │ ├── HasRepeatability.java │ │ ├── ImageControlDescriptor.java │ │ ├── ImageControlDescriptorDto.java │ │ ├── LineMode.java │ │ ├── MultiChoiceControlDescriptor.java │ │ ├── MultiChoiceControlDescriptorDto.java │ │ ├── NodeType.java │ │ ├── NumberControlDescriptor.java │ │ ├── NumberControlDescriptorDto.java │ │ ├── NumberControlRange.java │ │ ├── NumberControlType.java │ │ ├── Optionality.java │ │ ├── OwlBinding.java │ │ ├── OwlClassBinding.java │ │ ├── OwlInstanceBinding.java │ │ ├── OwlPropertyBinding.java │ │ ├── OwlSubClassBinding.java │ │ ├── Repeatability.java │ │ ├── SingleChoiceControlDescriptor.java │ │ ├── SingleChoiceControlDescriptorDto.java │ │ ├── SingleChoiceControlType.java │ │ ├── StringType.java │ │ ├── SubFormControlDescriptor.java │ │ ├── SubFormControlDescriptorDto.java │ │ ├── TextControlDescriptor.java │ │ └── TextControlDescriptorDto.java │ ├── frame │ ├── AnnotationPropertyFrame.java │ ├── CheckManchesterSyntaxFrameAction.java │ ├── CheckManchesterSyntaxFrameResult.java │ ├── ClassFrame.java │ ├── ClassFrameTranslationOptions.java │ ├── DataPropertyFrame.java │ ├── DataPropertyValue.java │ ├── EntityFrame.java │ ├── Frame.java │ ├── FrameComponentRenderer.java │ ├── GetAnnotationPropertyFrameAction.java │ ├── GetAnnotationPropertyFrameResult.java │ ├── GetClassFrameResult.java │ ├── GetDataPropertyFrameAction.java │ ├── GetDataPropertyFrameResult.java │ ├── GetManchesterSyntaxFrameAction.java │ ├── GetManchesterSyntaxFrameCompletionsAction.java │ ├── GetManchesterSyntaxFrameCompletionsResult.java │ ├── GetManchesterSyntaxFrameResult.java │ ├── GetObjectPropertyFrameAction.java │ ├── GetObjectPropertyFrameResult.java │ ├── GetOntologyFramesAction.java │ ├── GetOntologyFramesResult.java │ ├── HasAnnotationPropertyValues.java │ ├── HasFreshEntities.java │ ├── HasLogicalPropertyValues.java │ ├── HasPropertyValueList.java │ ├── HasPropertyValues.java │ ├── ManchesterSyntaxFrameParseError.java │ ├── ManchesterSyntaxFrameParseResult.java │ ├── NamedIndividualFrame.java │ ├── ObjectPropertyCharacteristic.java │ ├── ObjectPropertyFrame.java │ ├── ObjectPropertyValue.java │ ├── OntologyFrame.java │ ├── PlainAnnotationPropertyFrame.java │ ├── PlainClassFrame.java │ ├── PlainDataPropertyFrame.java │ ├── PlainEntityFrame.java │ ├── PlainNamedIndividualFrame.java │ ├── PlainObjectPropertyFrame.java │ ├── PlainPropertyAnnotationValue.java │ ├── PlainPropertyClassValue.java │ ├── PlainPropertyDatatypeValue.java │ ├── PlainPropertyIndividualValue.java │ ├── PlainPropertyLiteralValue.java │ ├── PlainPropertyValue.java │ ├── PlainPropertyValueVisitor.java │ ├── PropertyAnnotationValue.java │ ├── PropertyClassValue.java │ ├── PropertyDatatypeValue.java │ ├── PropertyIndividualValue.java │ ├── PropertyLiteralValue.java │ ├── PropertyValue.java │ ├── PropertyValueDescriptor.java │ ├── PropertyValueList.java │ ├── PropertyValueVisitor.java │ ├── RelationshipTranslationOptions.java │ ├── SetManchesterSyntaxFrameAction.java │ ├── SetManchesterSyntaxFrameException.java │ ├── SetManchesterSyntaxFrameResult.java │ ├── State.java │ ├── UpdateAnnotationPropertyFrameAction.java │ ├── UpdateDataPropertyFrameAction.java │ ├── UpdateFrameAction.java │ └── UpdateObjectPropertyFrameAction.java │ ├── hierarchy │ ├── EntityHierarchyChangedEvent.java │ ├── EntityHierarchyChangedHandler.java │ ├── GetHierarchyChildrenAction.java │ ├── GetHierarchyChildrenResult.java │ ├── GetHierarchyPathsToRootAction.java │ ├── GetHierarchyPathsToRootResult.java │ ├── GetHierarchyRootsAction.java │ ├── GetHierarchyRootsResult.java │ ├── GetHierarchySiblingsAction.java │ ├── GetHierarchySiblingsResult.java │ ├── HierarchyId.java │ ├── MoveHierarchyNodeAction.java │ └── MoveHierarchyNodeResult.java │ ├── individuals │ ├── GetIndividualsAction.java │ ├── GetIndividualsPageContainingIndividualAction.java │ ├── GetIndividualsPageContainingIndividualResult.java │ ├── GetIndividualsResult.java │ └── InstanceRetrievalMode.java │ ├── inject │ ├── EventPollingPeriod.java │ ├── EventPollingPeriodProvider.java │ └── SharedApplicationModule.java │ ├── issues │ ├── AddEntityCommentAction.java │ ├── AddEntityCommentResult.java │ ├── AddIssueCommentAction.java │ ├── AddIssueCommentResult.java │ ├── Comment.java │ ├── CommentId.java │ ├── CommentPostedEvent.java │ ├── CommentPostedHandler.java │ ├── CommentUpdatedEvent.java │ ├── CommentUpdatedHandler.java │ ├── CreateEntityDiscussionThreadAction.java │ ├── CreateEntityDiscussionThreadResult.java │ ├── DeleteEntityCommentAction.java │ ├── DeleteEntityCommentResult.java │ ├── DiscussionThreadCreatedEvent.java │ ├── DiscussionThreadCreatedHandler.java │ ├── DiscussionThreadStatusChangedEvent.java │ ├── DiscussionThreadStatusChangedHandler.java │ ├── EditCommentAction.java │ ├── EditCommentResult.java │ ├── EntityDiscussionThread.java │ ├── GetCommentedEntitiesAction.java │ ├── GetCommentedEntitiesResult.java │ ├── GetEntityDiscussionThreadsAction.java │ ├── GetEntityDiscussionThreadsResult.java │ ├── GetIssueAction.java │ ├── GetIssueResult.java │ ├── GetIssuesAction.java │ ├── GetIssuesResult.java │ ├── Issue.java │ ├── IssueBuilder.java │ ├── IssueTarget.java │ ├── LockSetting.java │ ├── Mention.java │ ├── Milestone.java │ ├── SetDiscussionThreadStatusAction.java │ ├── SetDiscussionThreadStatusResult.java │ ├── SortingKey.java │ ├── Status.java │ ├── ThreadId.java │ ├── events │ │ ├── AbstractIssueEvent.java │ │ ├── IssueAssigned.java │ │ ├── IssueClosed.java │ │ ├── IssueDemilestoned.java │ │ ├── IssueEvent.java │ │ ├── IssueLabelled.java │ │ ├── IssueLocked.java │ │ ├── IssueMilestoned.java │ │ ├── IssueReferenced.java │ │ ├── IssueRenamed.java │ │ ├── IssueReopened.java │ │ ├── IssueSubscribed.java │ │ ├── IssueTargetAdded.java │ │ ├── IssueTargetRemoved.java │ │ ├── IssueUnassigned.java │ │ ├── IssueUnlabelled.java │ │ └── IssueUnlocked.java │ └── mention │ │ ├── EntityMention.java │ │ ├── IssueMention.java │ │ ├── MentionParser.java │ │ ├── ParsedMention.java │ │ ├── RevisionMention.java │ │ └── UserIdMention.java │ ├── itemlist │ ├── CursorPositionProvider.java │ ├── GetItemsAction.java │ ├── GetItemsResult.java │ ├── GetPersonIdCompletionsAction.java │ ├── GetPersonIdCompletionsActionFactory.java │ ├── GetPersonIdCompletionsResult.java │ ├── GetPersonIdItemsAction.java │ ├── GetPersonIdItemsResult.java │ ├── GetPossibleItemCompletionsAction.java │ ├── GetPossibleItemCompletionsActionFactory.java │ ├── GetPossibleItemCompletionsResult.java │ ├── GetUserIdCompletionsAction.java │ ├── GetUserIdCompletionsActionFactory.java │ ├── GetUserIdCompletionsResult.java │ ├── ItemNameAtCursorParser.java │ ├── ItemNameAtCursorParserImpl.java │ ├── ItemNamesParser.java │ ├── ItemRenderer.java │ ├── PersonIdItemRenderer.java │ └── UserIdItemRenderer.java │ ├── lang │ ├── DefaultDisplayNameSettingsFactory.java │ ├── DictionaryLanguageUsage.java │ ├── DisplayNameSettings.java │ ├── DisplayNameSettingsChangedEvent.java │ ├── DisplayNameSettingsChangedHandler.java │ ├── GetProjectLangTagsAction.java │ ├── GetProjectLangTagsResult.java │ ├── LangTag.java │ ├── LangTagFilter.java │ ├── LanguageCode.java │ ├── LanguageCodeParser.java │ ├── LanguageMap.java │ └── LanguageTagFormatter.java │ ├── login │ └── LoginPlace.java │ ├── mail │ ├── GetEmailAddressAction.java │ ├── GetEmailAddressResult.java │ ├── SetEmailAddressAction.java │ └── SetEmailAddressResult.java │ ├── match │ ├── AnnotationPresence.java │ ├── GetMatchingEntitiesAction.java │ ├── GetMatchingEntitiesResult.java │ ├── RelationshipPresence.java │ └── criteria │ │ ├── AnnotationComponentsCriteria.java │ │ ├── AnnotationCriteria.java │ │ ├── AnnotationCriteriaVisitor.java │ │ ├── AnnotationPropertyCriteria.java │ │ ├── AnnotationPropertyCriteriaVisitor.java │ │ ├── AnnotationSetCriteria.java │ │ ├── AnnotationValueCriteria.java │ │ ├── AnnotationValueCriteriaVisitor.java │ │ ├── AnyAnnotationPropertyCriteria.java │ │ ├── AnyAnnotationSetCriteria.java │ │ ├── AnyAnnotationValueCriteria.java │ │ ├── AnyDatatypeCriteria.java │ │ ├── AnyLangTagOrEmptyLangTagCriteria.java │ │ ├── AnyRelationshipPropertyCriteria.java │ │ ├── AnyRelationshipValueCriteria.java │ │ ├── CompositeAnnotationValueCriteria.java │ │ ├── CompositeHierarchyPositionCriteria.java │ │ ├── CompositeLiteralCriteria.java │ │ ├── CompositeRelationshipValueCriteria.java │ │ ├── CompositeRootCriteria.java │ │ ├── Criteria.java │ │ ├── DatatypeCriteria.java │ │ ├── DatatypeCriteriaVisitor.java │ │ ├── DateCriteria.java │ │ ├── DateIsAfterCriteria.java │ │ ├── DateIsBeforeCriteria.java │ │ ├── EntityAnnotationCriteria.java │ │ ├── EntityAnnotationMatchCriteria.java │ │ ├── EntityAnnotationValuesAreNotDisjointCriteria.java │ │ ├── EntityCriteriaVisitor.java │ │ ├── EntityHasConflictingBooleanAnnotationValuesCriteria.java │ │ ├── EntityHasNonUniqueLangTagsCriteria.java │ │ ├── EntityIsCriteria.java │ │ ├── EntityIsDeprecatedCriteria.java │ │ ├── EntityIsNotDeprecatedCriteria.java │ │ ├── EntityMatchCriteria.java │ │ ├── EntityRelationshipCriteria.java │ │ ├── EntityTypeIsOneOfCriteria.java │ │ ├── HierarchyFilterType.java │ │ ├── HierarchyPositionCriteria.java │ │ ├── HierarchyPositionCriteriaVisitor.java │ │ ├── InstanceOfCriteria.java │ │ ├── IriCriteria.java │ │ ├── IriEqualsCriteria.java │ │ ├── IriHasAnnotationCriteria.java │ │ ├── IsNotBuiltInEntityCriteria.java │ │ ├── LangTagCriteria.java │ │ ├── LangTagCriteriaVisitor.java │ │ ├── LangTagIsEmptyCriteria.java │ │ ├── LangTagMatchesCriteria.java │ │ ├── LexicalValueCriteria.java │ │ ├── LiteralCriteria.java │ │ ├── LiteralCriteriaVisitor.java │ │ ├── LiteralLexicalValueNotInDatatypeLexicalSpaceCriteria.java │ │ ├── MultiMatchType.java │ │ ├── NumericPredicate.java │ │ ├── NumericPredicateVisitor.java │ │ ├── NumericPredicate_CustomFieldSerializer.java │ │ ├── NumericValueCriteria.java │ │ ├── RegexMatchCriteria.java │ │ ├── RelationshipCriteria.java │ │ ├── RelationshipPropertyCriteria.java │ │ ├── RelationshipPropertyCriteriaVisitor.java │ │ ├── RelationshipPropertyEqualsCriteria.java │ │ ├── RelationshipValueCriteria.java │ │ ├── RelationshipValueCriteriaVisitor.java │ │ ├── RelationshipValueEqualsCriteria.java │ │ ├── RelationshipValueEqualsEntityCriteria.java │ │ ├── RelationshipValueEqualsLiteralCriteria.java │ │ ├── RelationshipValueMatchesCriteria.java │ │ ├── RootCriteria.java │ │ ├── RootCriteriaVisitor.java │ │ ├── SimpleStringCriteria.java │ │ ├── StringContainsCriteria.java │ │ ├── StringContainsRegexMatchCriteria.java │ │ ├── StringContainsRepeatedSpacesCriteria.java │ │ ├── StringDoesNotContainRegexMatchCriteria.java │ │ ├── StringEndsWithCriteria.java │ │ ├── StringEqualsCriteria.java │ │ ├── StringHasUntrimmedSpaceCriteria.java │ │ ├── StringStartsWithCriteria.java │ │ └── SubClassOfCriteria.java │ ├── merge │ ├── ComputeProjectMergeAction.java │ ├── ComputeProjectMergeResult.java │ ├── Diff.java │ ├── MergeData.java │ ├── MergeUploadedProjectAction.java │ ├── MergeUploadedProjectResult.java │ └── OntologyDiff.java │ ├── merge_add │ ├── ExistingOntologyMergeAddAction.java │ ├── ExistingOntologyMergeAddResult.java │ ├── GetAllOntologiesAction.java │ ├── GetAllOntologiesResult.java │ ├── NewOntologyMergeAddAction.java │ └── NewOntologyMergeAddResult.java │ ├── object │ ├── OWLClassExpressionSelector.java │ ├── OWLDataPropertyExpressionSelector.java │ ├── OWLEntitySelector.java │ ├── OWLIndividualSelector.java │ ├── OWLObjectPropertyExpressionSelector.java │ ├── OWLObjectSelector.java │ └── SWRLAtomSelector.java │ ├── obo │ ├── GetOboNamespacesAction.java │ ├── GetOboNamespacesResult.java │ ├── GetOboTermCrossProductAction.java │ ├── GetOboTermCrossProductResult.java │ ├── GetOboTermDefinitionAction.java │ ├── GetOboTermDefinitionResult.java │ ├── GetOboTermIdAction.java │ ├── GetOboTermIdResult.java │ ├── GetOboTermRelationshipsAction.java │ ├── GetOboTermRelationshipsResult.java │ ├── GetOboTermSynonymsAction.java │ ├── GetOboTermSynonymsResult.java │ ├── GetOboTermXRefsAction.java │ ├── GetOboTermXRefsResult.java │ ├── IAOVocabulary.java │ ├── OBONamespace.java │ ├── OBORelationship.java │ ├── OBOSynonymType.java │ ├── OBOTermCrossProduct.java │ ├── OBOTermDefinition.java │ ├── OBOTermId.java │ ├── OBOTermMetaData.java │ ├── OBOTermRelationships.java │ ├── OBOTermSubset.java │ ├── OBOTermSynonym.java │ ├── OBOTermSynonymScope.java │ ├── OBOXRef.java │ ├── OboId.java │ ├── SetOboTermCrossProductAction.java │ ├── SetOboTermCrossProductResult.java │ ├── SetOboTermDefinitionAction.java │ ├── SetOboTermDefinitionResult.java │ ├── SetOboTermIdAction.java │ ├── SetOboTermIdResult.java │ ├── SetOboTermRelationshipsAction.java │ ├── SetOboTermRelationshipsResult.java │ ├── SetOboTermSynonymsAction.java │ ├── SetOboTermSynonymsResult.java │ ├── SetOboTermXRefsAction.java │ └── SetOboTermXRefsResult.java │ ├── ontology │ └── OntologyIdData.java │ ├── pagination │ ├── Page.java │ └── PageRequest.java │ ├── permissions │ ├── GetProjectPermissionsAction.java │ ├── GetProjectPermissionsResult.java │ ├── PermissionDeniedException.java │ ├── PermissionsChangedEvent.java │ ├── PermissionsChangedHandler.java │ ├── RebuildPermissionsAction.java │ └── RebuildPermissionsResult.java │ ├── perspective │ ├── EntityTypePerspectiveMapper.java │ ├── GetPerspectiveDetailsAction.java │ ├── GetPerspectiveDetailsResult.java │ ├── GetPerspectiveLayoutAction.java │ ├── GetPerspectiveLayoutResult.java │ ├── GetPerspectivesAction.java │ ├── GetPerspectivesResult.java │ ├── HasPerspectiveId.java │ ├── PerspectiveCoordinates.java │ ├── PerspectiveDescriptor.java │ ├── PerspectiveDetails.java │ ├── PerspectiveId.java │ ├── PerspectiveLayout.java │ ├── ResetPerspectiveLayoutAction.java │ ├── ResetPerspectiveLayoutResult.java │ ├── ResetPerspectivesAction.java │ ├── ResetPerspectivesResult.java │ ├── SetPerspectiveDetailsAction.java │ ├── SetPerspectiveDetailsResult.java │ ├── SetPerspectiveLayoutAction.java │ ├── SetPerspectiveLayoutResult.java │ ├── SetPerspectivesAction.java │ └── SetPerspectivesResult.java │ ├── place │ ├── AdminPlaceTokenizer.java │ ├── ApplicationSettingsPlace.java │ ├── CollectionViewPlace.java │ ├── CollectionViewPlaceTokenizer.java │ ├── DefaultItemTypeMapper.java │ ├── EntitySearchSettingsPlace.java │ ├── EntitySearchSettingsPlaceTokenizer.java │ ├── Item.java │ ├── ItemSelection.java │ ├── ItemToken.java │ ├── ItemTokenParser.java │ ├── ItemTokenizer.java │ ├── LanguageSettingsPlace.java │ ├── LanguageSettingsPlaceTokenizer.java │ ├── LoginPlaceTokenizer.java │ ├── OWLAnnotationPropertyItem.java │ ├── OWLClassItem.java │ ├── OWLDataPropertyItem.java │ ├── OWLEntityItemParser.java │ ├── OWLNamedIndividualItem.java │ ├── OWLObjectPropertyItem.java │ ├── PlaceKey.java │ ├── PlacePropertyValueList.java │ ├── ProjectListPlace.java │ ├── ProjectListPlaceTokenizer.java │ ├── ProjectPrefixDeclarationsPlace.java │ ├── ProjectPrefixDeclarationsPlaceTokenizer.java │ ├── ProjectSettingsPlace.java │ ├── ProjectTagsPlace.java │ ├── ProjectTagsPlaceTokenizer.java │ ├── ProjectViewPlace.java │ ├── ProjectViewPlaceTokenizer.java │ ├── SignUpPlace.java │ ├── SignUpPlaceTokenizer.java │ └── WebProtegePlaceTokenizer.java │ ├── portlet │ └── PortletPluginId.java │ ├── project │ ├── AvailableProject.java │ ├── CreateNewProjectAction.java │ ├── CreateNewProjectResult.java │ ├── GetAvailableProjectsAction.java │ ├── GetAvailableProjectsResult.java │ ├── GetAvailableProjectsWithPermissionAction.java │ ├── GetAvailableProjectsWithPermissionResult.java │ ├── GetProjectDetailsAction.java │ ├── GetProjectDetailsResult.java │ ├── GetProjectInfoAction.java │ ├── GetProjectInfoResult.java │ ├── GetProjectPrefixDeclarationsAction.java │ ├── GetProjectPrefixDeclarationsResult.java │ ├── ImportedOntologyMetadata.java │ ├── LoadProjectAction.java │ ├── LoadProjectResult.java │ ├── MoveProjectsToTrashAction.java │ ├── MoveProjectsToTrashResult.java │ ├── NewProjectSettings.java │ ├── PrefixDeclaration.java │ ├── PrefixDeclarations.java │ ├── ProjectAlreadyExistsException.java │ ├── ProjectAlreadyRegisteredException.java │ ├── ProjectCreationException.java │ ├── ProjectDetails.java │ ├── ProjectDocumentExistsException.java │ ├── ProjectDocumentNotFoundException.java │ ├── ProjectNotRegisteredException.java │ ├── RemoveProjectFromTrashAction.java │ ├── RemoveProjectsFromTrashResult.java │ ├── SetProjectPrefixDeclarationsAction.java │ ├── SetProjectPrefixDeclarationsResult.java │ └── UnknownProjectException.java │ ├── projectsettings │ ├── AllProjectSettings.java │ ├── GetProjectSettingsAction.java │ ├── GetProjectSettingsResult.java │ ├── ProjectSettings.java │ ├── ProjectSettingsChangedEvent.java │ ├── ProjectSettingsChangedHandler.java │ ├── ProjectSettingsPlaceTokenizer.java │ ├── SetProjectSettingsAction.java │ ├── SetProjectSettingsResult.java │ ├── SlackIntegrationSettings.java │ ├── WebhookSetting.java │ └── WebhookSettings.java │ ├── renderer │ ├── AxiomTypeRenderer.java │ ├── GetEntityHtmlRenderingAction.java │ ├── GetEntityHtmlRenderingResult.java │ ├── GetEntityRenderingAction.java │ ├── GetEntityRenderingResult.java │ └── HasHtmlBrowserText.java │ ├── revision │ ├── GetHeadRevisionNumberAction.java │ ├── GetHeadRevisionNumberResult.java │ ├── GetRevisionSummariesAction.java │ └── GetRevisionSummariesResult.java │ ├── search │ ├── EntityNameMatchResult.java │ ├── EntityNameMatchType.java │ ├── EntityNameMatcher.java │ ├── EntitySearchFilter.java │ ├── EntitySearchFilterId.java │ ├── EntitySearchResult.java │ ├── GetSearchSettingsAction.java │ ├── GetSearchSettingsResult.java │ ├── PerformEntitySearchAction.java │ ├── PerformEntitySearchResult.java │ ├── PrefixNameMatchType.java │ ├── SearchField.java │ ├── SearchResultMatch.java │ ├── SearchResultMatchPosition.java │ ├── SearchType.java │ ├── SetSearchSettingsAction.java │ └── SetSearchSettingsResult.java │ ├── sharing │ ├── GetProjectSharingSettingsAction.java │ ├── GetProjectSharingSettingsResult.java │ ├── PersonId.java │ ├── ProjectSharingSettings.java │ ├── SetProjectSharingSettingsAction.java │ ├── SetProjectSharingSettingsResult.java │ ├── SharingPermission.java │ ├── SharingSetting.java │ ├── SharingSettingsPlace.java │ └── SharingSettingsPlaceTokenizer.java │ ├── shortform │ ├── AnnotationAssertionBasedDictionaryLanguage.java │ ├── AnnotationAssertionDictionaryLanguage.java │ ├── AnnotationAssertionPathDictionaryLanguage.java │ ├── DictionaryLanguage.java │ ├── DictionaryLanguageData.java │ ├── DictionaryLanguageFilter.java │ ├── DictionaryLanguageVisitor.java │ ├── LocalNameDictionaryLanguage.java │ ├── OboIdDictionaryLanguage.java │ ├── PrefixedNameDictionaryLanguage.java │ ├── ShortForm.java │ └── WellKnownLabellingIris.java │ ├── tag │ ├── AddProjectTagAction.java │ ├── AddProjectTagResult.java │ ├── EntityTagsChangedEvent.java │ ├── EntityTagsChangedHandler.java │ ├── GetEntityTagsAction.java │ ├── GetEntityTagsResult.java │ ├── GetProjectTagsAction.java │ ├── GetProjectTagsResult.java │ ├── ProjectTagsChangedEvent.java │ ├── ProjectTagsChangedHandler.java │ ├── SetProjectTagsAction.java │ ├── SetProjectTagsResult.java │ ├── Tag.java │ ├── TagData.java │ ├── TagId.java │ ├── UpdateEntityTagsAction.java │ └── UpdateEntityTagsResult.java │ ├── upload │ └── FileUploadResponseAttributes.java │ ├── usage │ ├── GetUsageAction.java │ ├── GetUsageResult.java │ ├── UsageFilter.java │ ├── UsageReference.java │ └── UsageReferenceComparator.java │ ├── user │ ├── CreateUserAccountAction.java │ ├── CreateUserAccountResult.java │ ├── GetUserIdsAction.java │ ├── GetUserIdsResult.java │ ├── LogOutUserAction.java │ ├── LogOutUserResult.java │ ├── UnrecognizedUserNameException.java │ ├── UserEmailAlreadyExistsException.java │ ├── UserIdInitialsExtractor.java │ ├── UserIdProjectIdKey.java │ ├── UserNameAlreadyExistsException.java │ └── UserRegistrationException.java │ ├── viz │ ├── AnyEdgeCriteria.java │ ├── AnyEdgeTypeCriteria.java │ ├── AnyInstanceOfEdgeCriteria.java │ ├── AnyNodeCriteria.java │ ├── AnyRelationshipEdgeCriteria.java │ ├── AnySubClassOfEdgeCriteria.java │ ├── CompositeEdgeCriteria.java │ ├── Edge.java │ ├── EdgeCriteria.java │ ├── EdgeCriteriaSplitter.java │ ├── EdgeCriteriaVisitor.java │ ├── EdgeNodeCriteria.java │ ├── EdgeTypeCriteria.java │ ├── EntityGraph.java │ ├── EntityGraphFilter.java │ ├── EntityGraphSettings.java │ ├── FilterName.java │ ├── GetEntityGraphAction.java │ ├── GetEntityGraphResult.java │ ├── GetProjectEntityGraphDefaultEdgeCriteriaAction.java │ ├── GetProjectEntityGraphDefaultEdgeCriteriaResult.java │ ├── GetUserProjectEntityGraphCriteriaAction.java │ ├── GetUserProjectEntityGraphCriteriaResult.java │ ├── HeadNodeMatchesCriteria.java │ ├── IsAEdge.java │ ├── NegatedEdgeCriteria.java │ ├── NoEdgeCriteria.java │ ├── NodeMatchesCriteria.java │ ├── ProjectUserEntityGraphSettings.java │ ├── RelationshipEdge.java │ ├── RelationshipEdgePropertyEqualsCriteria.java │ ├── SetEntityGraphActiveFiltersAction.java │ ├── SetEntityGraphActiveFiltersResult.java │ ├── SetUserProjectEntityGraphResult.java │ ├── SetUserProjectEntityGraphSettingsAction.java │ ├── SplitEdgeCriteria.java │ └── TailNodeMatchesCriteria.java │ ├── watches │ ├── AddWatchAction.java │ ├── AddWatchResult.java │ ├── GetWatchesAction.java │ ├── GetWatchesResult.java │ ├── RemoveWatchesAction.java │ ├── RemoveWatchesResult.java │ ├── SetEntityWatchesAction.java │ ├── SetEntityWatchesResult.java │ ├── Watch.java │ ├── WatchAddedEvent.java │ ├── WatchAddedHandler.java │ ├── WatchRemovedEvent.java │ ├── WatchRemovedHandler.java │ └── WatchType.java │ └── webhook │ ├── ProjectWebhook.java │ ├── ProjectWebhookEventType.java │ ├── SlackWebhook.java │ └── Webhook.java └── test ├── java └── edu │ └── stanford │ └── bmir │ └── protege │ └── web │ ├── server │ └── api │ │ └── TimestampDeserializer_TestCase.java │ └── shared │ ├── DataFactory_TestCase.java │ ├── TimeUtil_TestCase.java │ ├── admin │ └── ApplicationPreferences_TestCase.java │ ├── app │ └── UserInSession_TestCase.java │ ├── auth │ ├── AuthenticateUserAction_TestCase.java │ ├── AuthenticateUserResult_TestCase.java │ ├── ChallengeMessage_TestCase.java │ ├── ChangePasswordAction_TestCase.java │ ├── ChangePasswordResult_TestCase.java │ ├── ChapResponseDigestAlgorithm_TestCase.java │ ├── ChapResponse_TestCase.java │ ├── ChapSessionId_TestCase.java │ ├── ChapSession_TestCase.java │ ├── GetChapSessionAction_TestCase.java │ ├── GetChapSessionResult_TestCase.java │ ├── PerformLoginAction_TestCase.java │ ├── PerformLoginResult_TestCase.java │ └── SignInDetails_TestCase.java │ ├── change │ ├── GetProjectChangesAction_TestCase.java │ ├── GetProjectChangesResult_TestCase.java │ ├── GetWatchedEntityChangesAction_TestCase.java │ ├── GetWatchedEntityChangesResult_TestCase.java │ ├── ProjectChangeTimestampComparator_TestCase.java │ ├── ProjectChange_TestCase.java │ ├── RevertRevisionAction_TestCase.java │ └── RevertRevisionResult_TestCase.java │ ├── chgpwd │ ├── ResetPasswordAction_TestCase.java │ ├── ResetPasswordData_TestCase.java │ └── ResetPasswordResult_TestCase.java │ ├── collection │ └── CollectionId_TestCase.java │ ├── color │ └── Color_TestCase.java │ ├── crud │ ├── SuppliedNameSuffixSettingsTestCase.java │ ├── UuidSuffixSettingsTestCase.java │ ├── WhiteSpaceTreatmentTestCase.java │ └── obo │ │ ├── OBOSuffixSettingsTestCase.java │ │ └── UuidSuffixSettingsTestCase.java │ ├── diff │ └── DiffElement_TestCase.java │ ├── dispatch │ └── ActionExecutionResult_TestCase.java │ ├── entites │ └── EntityLookupRequestTestCase.java │ ├── entity │ ├── DeclarationParser_TestCase.java │ ├── DeleteEntitiesAction_TestCase.java │ ├── DeleteEntitiesResult_TestCase.java │ ├── EntityNameChar_TestCase.java │ ├── EntityNameUtils_IndexOfWordEnd_TestCase.java │ ├── EntityNameUtils_IndexOfWord_TestCase.java │ ├── EntityNameUtils_IsQuoted_TestCase.java │ ├── EntityNameUtils_IsWordStart_TestCase.java │ ├── FreshEntityIri_TestCase.java │ ├── MergeEntitiesAction_TestCase.java │ ├── MergeEntitiesResult_TestCase.java │ ├── OWLAnnotationPropertyData_TestCase.java │ ├── OWLClassData_TestCase.java │ ├── OWLDataPropertyData_TestCase.java │ ├── OWLDatatypeData_TestCase.java │ ├── OWLLiteralData_TestCase.java │ ├── OWLNamedIndividualData_TestCase.java │ └── OWLObjectPropertyData_TestCase.java │ ├── event │ ├── GetProjectEventsAction_TestCase.java │ └── PermissionsChangedEvent_TestCase.java │ ├── form │ ├── FormId_TestCase.java │ └── field │ │ ├── FormFieldId_TestCase.java │ │ ├── FormRegionOrdering_TestCase.java │ │ ├── GridColumnId_TestCase.java │ │ └── TextControlDescriptor_TestCase.java │ ├── frame │ ├── ClassFrame_TestCase.java │ ├── DataPropertyFrame_TestCase.java │ ├── GetOntologyFramesAction_TestCase.java │ ├── GetOntologyFramesResult_TestCase.java │ ├── NamedIndividualFrame_TestCase.java │ ├── ObjectPropertyCharacteristic_TestCase.java │ ├── ObjectPropertyFrame_TestCase.java │ ├── OntologyFrame_TestCase.java │ ├── PropertyValueList_TestCase.java │ ├── SetManchesterSyntaxFrameAction_TestCase.java │ └── SetManchesterSyntaxFrameResult_TestCase.java │ ├── hierarchy │ ├── GetHierarchyChildrenAction_TestCase.java │ ├── GetHierarchyPathsToRootAction_TestCase.java │ ├── GetHierarchyRootsAction_TestCase.java │ └── HierarchyId_TestCase.java │ ├── issues │ ├── CommentId_TestCase.java │ ├── Comment_TestCase.java │ ├── GetIssuesAction_TestCase.java │ ├── IssueBuilder_TestCase.java │ ├── Issue_TestCase.java │ ├── Milestone_TestCase.java │ ├── events │ │ ├── IssueAssigned_TestCase.java │ │ ├── IssueClosed_TestCase.java │ │ ├── IssueDemilestoned_TestCase.java │ │ ├── IssueLabelled_TestCase.java │ │ ├── IssueLocked_TestCase.java │ │ ├── IssueMilestoned_TestCase.java │ │ ├── IssueReferenced_TestCase.java │ │ ├── IssueRenamed_TestCase.java │ │ ├── IssueReopened_TestCase.java │ │ ├── IssueSubscribed_TestCase.java │ │ ├── IssueTargetAdded_TestCase.java │ │ ├── IssueTargetRemoved_TestCase.java │ │ ├── IssueUnassigned_TestCase.java │ │ ├── IssueUnlabelled_TestCase.java │ │ └── IssueUnlocked_TestCase.java │ └── mention │ │ └── MentionParser_TestCase.java │ ├── itemlist │ ├── GetPersonIdCompletionsAction_TestCase.java │ ├── GetPersonIdCompletionsResult_TestCase.java │ ├── GetPersonIdItemsAction_TestCase.java │ ├── GetPersonIdItemsResult_TestCase.java │ ├── GetUserIdCompletionsAction_TestCase.java │ ├── GetUserIdCompletionsResult_TestCase.java │ └── ItemNameAtCursorParserImpl_TestCase.java │ ├── lang │ ├── DefaultDisplayNameSettingsFactory_TestCase.java │ ├── LangTagFilter_TestCase.java │ ├── LangTag_TestCase.java │ ├── LanguageCodeParser_TestCase.java │ ├── LanguageCode_TestCase.java │ └── LanguageTagFormatter_TestCase.java │ ├── mail │ ├── GetEmailAddressActionTestCase.java │ ├── SetEmailAddressActionTestCase.java │ └── SetEmailAddressResult_TestCase.java │ ├── merge │ └── OntologyDiff_TestCase.java │ ├── obo │ ├── GetOboNamespacesAction_TestCase.java │ ├── GetOboTermCrossProductAction_TestCase.java │ ├── GetOboTermCrossProductResult_TestCase.java │ ├── GetOboTermDefinitionAction_TestCase.java │ ├── GetOboTermDefinitionResult_TestCase.java │ ├── GetOboTermIdAction_TestCase.java │ ├── GetOboTermIdResult_TestCase.java │ ├── GetOboTermRelationshipsAction_TestCase.java │ ├── GetOboTermRelationshipsResult_TestCase.java │ ├── GetOboTermSynonymsAction_TestCase.java │ ├── GetOboTermSynonymsResult_TestCase.java │ ├── OBORelationship_TestCase.java │ ├── OBOTermCrossProduct_TestCase.java │ ├── OBOTermDefinition_TestCase.java │ ├── OBOTermId_TestCase.java │ ├── OBOTermRelationships_TestCase.java │ ├── OBOTermSynonym_TestCase.java │ ├── OboId_TestCase.java │ ├── SetOboTermCrossProductAction_TestCase.java │ └── SetOboTermIdAction_TestCase.java │ ├── ontology │ └── OntologyIdData_TestCase.java │ ├── pagination │ ├── PageRequestTestCase.java │ └── PageTestCase.java │ ├── permissions │ └── GetProjectPermissionsAction_TestCase.java │ ├── perspective │ ├── GetPerspectiveLayoutAction_TestCase.java │ ├── PerspectiveId_Json_TestCase.java │ ├── PerspectiveId_TestCase.java │ ├── ResetPerspectiveLayoutAction_TestCase.java │ ├── ResetPerspectiveLayoutResult_TestCase.java │ └── SetPerspectiveLayoutAction_TestCase.java │ ├── place │ ├── CollectionViewPlace_TestCase.java │ ├── LanguageSettingsPlaceTokenizer_TestCase.java │ ├── LanguageSettingsPlace_TestCase.java │ ├── ProjectPrefixDeclarationsPlaceTokenizer_TestCase.java │ ├── ProjectPrefixDeclarationsPlace_TestCase.java │ ├── ProjectSettingsPlace_TestCase.java │ ├── ProjectTagsPlaceTokenizer_TestCase.java │ ├── ProjectTagsPlace_TestCase.java │ ├── ProjectViewPlaceTokenizer_TestCase.java │ └── ProjectViewPlace_TestCase.java │ ├── project │ ├── AvailableProject_TestCase.java │ ├── CreateNewProjectAction_TestCase.java │ ├── CreateNewProjectResult_TestCase.java │ ├── GetProjectDetailsAction_TestCase.java │ ├── GetProjectDetailsResult_TestCase.java │ ├── GetProjectPrefixDeclarationsAction_TestCase.java │ ├── GetProjectPrefixDeclarationsResult_TestCase.java │ ├── LoadProjectAction_TestCase.java │ ├── LoadProjectResult_TestCase.java │ ├── PrefixDeclaration_TestCase.java │ ├── PrefixDeclarations_TestCase.java │ ├── ProjectDetailsTestCase.java │ ├── SetProjectPrefixDeclarationsAction_TestCase.java │ └── SetProjectPrefixDeclarationsResult_TestCase.java │ ├── projectsettings │ ├── GetProjectSettingsAction_TestCase.java │ ├── GetProjectSettingsResult_TestCase.java │ ├── ProjectSettingsPlaceTokenizer_TestCase.java │ ├── ProjectSettings_TestCase.java │ ├── SetProjectSettingsAction_TestCase.java │ └── SetProjectSettingsResult_TestCase.java │ ├── revision │ ├── GetHeadRevisionNumberAction_TestCase.java │ ├── GetHeadRevisionNumberResult_TestCase.java │ ├── GetRevisionSummariesAction_TestCase.java │ └── GetRevisionSummariesResult_TestCase.java │ ├── search │ ├── EntityNameMatchResult_TestCase.java │ ├── EntityNameMatcher_TestCase.java │ ├── EntitySearchFilterId_TestCase.java │ ├── EntitySearchFilter_TestCase.java │ └── SearchResultMatchPosition_TestCase.java │ ├── sharing │ ├── GetProjectSharingSettingsAction_TestCase.java │ ├── GetProjectSharingSettingsResult_TestCase.java │ ├── PersonId_TestCase.java │ ├── ProjectSharingSettings_TestCase.java │ ├── SetProjectSharingSettingsAction_TestCase.java │ ├── SharingSetting_TestCase.java │ └── SharingSettingsPlaceTokenizer_TestCase.java │ ├── shortform │ └── DictionaryLanguageFilter_TestCase.java │ ├── tag │ ├── AddProjectTagAction_TestCase.java │ ├── AddProjectTagResult_TestCase.java │ ├── EntityTagsChangedEvent_TestCase.java │ ├── GetEntityTagsAction_TestCase.java │ ├── GetEntityTagsResult_TestCase.java │ ├── GetProjectTagsAction_TestCase.java │ ├── GetProjectTagsResult_TestCase.java │ ├── TagId_TestCase.java │ ├── Tag_TestCase.java │ └── UpdateEntityTagsAction_TestCase.java │ ├── user │ ├── CreateUserAccountAction_TestCase.java │ ├── CreateUserAccountResult_TestCase.java │ ├── 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