├── .gitignore ├── 01_correlation_regression ├── 01_Correlation_and_Regression.Rmd ├── 01_Correlation_and_Regression.html ├── Week 1 - correlations and covariances KEY.Rmd ├── Week_1_-_correlations_and_covariances_KEY.html └── venn.png ├── 02_sem_basics ├── matrix_algebra_review.Rmd ├── matrix_algebra_review.html ├── matrix_multiplication.png ├── onyx_tutorial │ ├── CFA_data.csv │ ├── Onyx.Rmd │ ├── Onyx.html │ ├── images │ │ ├── cfa.png │ │ ├── create_new_model.png │ │ ├── create_var.png │ │ ├── free_param.png │ │ ├── lav_code.png │ │ ├── load_data.png │ │ ├── make_pretty.png │ │ ├── mult_reg.png │ │ ├── reg_1_wdata.png │ │ ├── reg_path_1.png │ │ ├── sample_data.png │ │ ├── show_lavaan.png │ │ └── show_standard_estims.png │ ├── mtcars.csv │ ├── simple_regression_data.csv │ ├── single_predictor_data.R │ ├── userguide.pdf │ └── Ωnyx_Tutorial_NH_1_15_19.docx ├── pa_na_factor_model.png ├── pa_na_factor_model_equations.png ├── ram_notation-01.svg ├── ram_simplified-01.svg ├── sem_notation.Rmd └── sem_notation.html ├── 03_path_models ├── leftovers.Rmd ├── nonrecursive.gv ├── path_analysis_demo.Rmd ├── path_analysis_demo.html ├── path_analysis_fundamental.Rmd ├── path_analysis_fundamental.html ├── ram_notation-01.svg ├── ram_simplified-01.svg └── sem_process-01.svg ├── 04_latent_variables_estimation ├── bifactor_model.png ├── common_factor_model.png ├── estimating_sems-01.svg ├── latent_variables.Rmd ├── latent_variables.html ├── maximum_likelihood.Rmd └── maximum_likelihood.html ├── 05_psychometrics ├── common_factor_model.png ├── lv_sim.Rmd ├── lv_sim.html ├── psychometrics_overview.Rmd └── psychometrics_overview.html ├── 06_factor_models ├── bifactor_model.png ├── factor_models.Rmd ├── factor_models.html ├── oblique_rotation.png ├── original_factor_solution.png ├── orthogonal_rotation.png ├── quick_efa_data.csv └── two-factor-efa.png ├── 07_full_sem ├── 10.1b.PNG ├── 10.6.PNG ├── 10.x.png ├── 9.5a.PNG ├── 9.5a2.PNG ├── 9.5b.PNG ├── 9.5c.PNG ├── 9.6a.PNG ├── 9.6b.PNG ├── 9.6c.PNG ├── 9.6d.PNG ├── 9.6e.PNG ├── 9.6f.PNG ├── ULI_data.PNG ├── ULI_image.PNG ├── full_sem_demo.Rmd ├── full_sem_demo.html ├── full_sem_specification.Rmd ├── full_sem_specification.html ├── kievit.png ├── scaling.png └── sem_model.png ├── 08_fit ├── goodness_of_fit_table.png ├── goodness_of_fit_table.psd ├── sem_fit_modification.Rmd └── sem_fit_modification.html ├── 09_model_comparison ├── K-L_distance.png ├── equiv_model_a.png ├── equiv_model_b.png ├── equiv_model_c.png ├── equiv_model_d.png ├── equiv_model_e.png ├── equiv_model_f.png ├── model_comparison.Rmd └── model_comparison.html ├── 10_best_practices ├── HiTOP_figure.jpg ├── best_practices.Rmd ├── best_practices.html ├── estimating_sems-01.svg ├── frisby_bifactor.png ├── frisby_hierarchical.png ├── important_odds_and_ends.Rmd ├── important_odds_and_ends.html ├── masyn.png ├── pd_example.Rmd ├── pd_example.html ├── pdsymptoms_for_sem.RData ├── q_and_a.Rmd ├── q_and_a.html └── schafer_2002_missing_mechanisms.png ├── 11_invariance_groups ├── brown_ch7_lavaan.R ├── equal_loadings_groups.svg ├── factor_corr_equiv.svg ├── factor_model_with_means.png ├── invariance_groups_constraints.Rmd ├── invariance_groups_constraints.html ├── multiplegroup6Dec2012.pptx └── two_groups.png ├── 12_mediation_moderation ├── mediation_data.csv ├── mediation_example.png ├── mediation_moderation.Rmd ├── mediation_moderation.html ├── mediation_moderation_demo.Rmd ├── mediation_moderation_demo.html ├── moderated_mediation_first_stage_conceptual.png ├── moderated_mediation_first_stage_example.png ├── moderated_mediation_first_stage_statistical.png ├── moderated_mediation_second_stage_example.png ├── moderated_mediation_second_stage_statistical.png ├── moderation_conceptual.png ├── moderation_example.png ├── moderation_statistical.png ├── parallel_mediators.png ├── processR.Rmd ├── processR.html └── sequential_mediators.png ├── 13_qa_writeup ├── 13_qa.Rmd ├── 13_qa.html ├── hox_msem_onefac_both.png └── parcels.png ├── 14_longitudinal ├── growth.gv ├── growth_modeling.Rmd ├── growth_modeling.html └── unconditional_lcm.png ├── 15_multilevel ├── FamIQData.dat ├── FamIQData.sav ├── ex9.1.dat ├── ex9.1.inp ├── ex9.1.out ├── ex9.1a.dat ├── ex9.1a.inp ├── ex9.1a.out ├── ex9.1a_diagram.png ├── ex9.1b.dat ├── ex9.1b.inp ├── ex9.1b.out ├── ex9.1b_diagram.png ├── ex9.2c.dat ├── ex9.2c.inp ├── ex9.2c.out ├── hox_m1.dat ├── hox_m1.inp ├── hox_m1.out ├── hox_m10.dat ├── hox_m10.inp ├── hox_m10.out ├── hox_m10_v1.dat ├── hox_m10_v1.inp ├── hox_m10_v1.out ├── hox_m10_v2.dat ├── hox_m10_v2.inp ├── hox_m10_v2.out ├── hox_m10a.dat ├── hox_m10a.inp ├── hox_m10a.out ├── hox_m10b.dat ├── hox_m10b.inp ├── hox_m10b.out ├── hox_m11a.dat ├── hox_m11a.inp ├── hox_m11a.out ├── hox_m11b.dat ├── hox_m11b.inp ├── hox_m11b.out ├── hox_m2.dat ├── hox_m2.inp ├── hox_m2.out ├── hox_m3.dat ├── hox_m3.inp ├── hox_m3.out ├── hox_m4.dat ├── hox_m4.inp ├── hox_m4.out ├── hox_m5.dat ├── 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