├── .circleci └── config.yml ├── .codespellignore ├── .flake8 ├── .github ├── .DS_Store ├── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md ├── dependabot.yml ├── pull_request_template.md └── workflows │ ├── circle_artifacts.yml │ ├── main.yml │ └── pr_checks.yml ├── .gitignore ├── .pre-commit-config.yaml ├── .yamllint.yaml ├── CITATION.cff ├── CONTRIBUTING.md ├── GOVERNANCE.md ├── LICENSE ├── MAINTAINERS.md ├── Makefile ├── README.md ├── doc ├── .gitignore ├── Makefile ├── _static │ ├── css │ │ └── custom.css │ ├── favicon_url.ico │ └── versions.json ├── _templates │ ├── autosummary │ │ ├── base.rst │ │ ├── class.rst │ │ └── function.rst │ └── layout.html ├── api.rst ├── conf.py ├── glossary.rst ├── index.rst ├── installation.md ├── make.bat ├── reference │ ├── algorithms │ │ └── index.rst │ ├── classes │ │ └── index.rst │ ├── export │ │ └── index.rst │ ├── functional │ │ └── index.rst │ └── simulation │ │ └── index.rst ├── references.bib ├── use.rst ├── user_guide.rst ├── whats_new.rst └── whats_new │ ├── _contributors.rst │ ├── changelog_legend.inc │ ├── v0.1.rst │ └── v0.2.rst ├── examples ├── README.txt ├── intro │ ├── README.txt │ ├── checking_validity_of_a_pag.py │ ├── inducing_path.py │ └── intro_causal_graphs.py ├── mixededge │ ├── README.txt │ └── plot_mixed_edge_graph.py ├── simulations │ ├── simulate_discrete_causal_bayesian_network.ipynb │ └── simulate_sachs_discrete_graph.ipynb ├── time_series_causal_graphs.ipynb └── visualization │ ├── README.txt │ ├── draw_and_compare_graphs_with_same_layout.py │ └── plot_timeseries_graphs.py ├── pyproject.toml ├── pywhy_graphs ├── __init__.py ├── _version.py ├── algorithms │ ├── __init__.py │ ├── cpdag.py │ ├── cyclic.py │ ├── generic.py │ ├── multidomain.py │ ├── pag.py │ ├── semi_directed_paths.py │ └── tests │ │ ├── test_cpdag.py │ │ ├── test_cyclic.py │ │ ├── test_generic.py │ │ ├── test_multidomain_algs.py │ │ ├── test_pag.py │ │ └── test_semi_directed_paths.py ├── array │ ├── __init__.py │ ├── api.py │ └── tests │ │ └── test_api.py ├── classes │ ├── __init__.py │ ├── admg.py │ ├── augmented.py │ ├── base.py │ ├── cpdag.py │ ├── functions.py │ ├── networkxprotocol.py │ ├── pag.py │ ├── tests │ │ └── test_graph.py │ └── timeseries │ │ ├── __init__.py │ │ ├── base.py │ │ ├── conversion.py │ │ ├── cpdag.py │ │ ├── digraph.py │ │ ├── functions.py │ │ ├── graph.py │ │ ├── mixededge.py │ │ ├── pag.py │ │ └── tests │ │ ├── test_basic_timeseries.py │ │ ├── test_equivalence_classes.py │ │ ├── test_functions.py │ │ ├── test_mixededge_stationary_timeseries.py │ │ ├── test_mixededge_timeseries.py │ │ └── test_networkx.py ├── config.py ├── export │ ├── __init__.py │ ├── ananke.py │ ├── causallearn.py │ ├── numpy.py │ ├── pcalg.py │ ├── tests │ │ ├── test_ananke.py │ │ ├── test_causal_learn.py │ │ ├── test_numpy.py │ │ ├── test_pag_tetrad.txt │ │ ├── test_pcalg.py │ │ └── test_tetrad.py │ ├── tetrad.py │ └── tigramite.py ├── functional │ ├── __init__.py │ ├── additive.py │ ├── base.py │ ├── discrete.py │ ├── linear.py │ ├── multidomain.py │ ├── sampling.py │ ├── tests │ │ ├── conftest.py │ │ ├── test_base.py │ │ ├── test_discrete.py │ │ ├── test_linear.py │ │ ├── test_multidomain.py │ │ └── test_utils.py │ └── utils.py ├── networkx │ ├── __init__.py │ ├── algorithms │ │ ├── __init__.py │ │ └── causal │ │ │ ├── __init__.py │ │ │ ├── convert.py │ │ │ ├── m_separation.py │ │ │ ├── mixed_edge_moral.py │ │ │ └── tests │ │ │ ├── test_convert.py │ │ │ ├── test_m_separation.py │ │ │ └── test_mixed_edge_moral.py │ └── classes │ │ ├── __init__.py │ │ ├── mixededge.py │ │ └── tests │ │ └── test_mixedgraph.py ├── simulate.py ├── testing.py ├── tests │ ├── test_config.py │ └── test_simulate.py ├── typing.py └── viz │ ├── __init__.py │ ├── draw.py │ ├── layout.py │ └── tests │ └── test_draw.py └── style_requirements.txt /.circleci/config.yml: -------------------------------------------------------------------------------- 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