├── .gitattributes ├── .gitconfig ├── .gitignore ├── .readthedocs.yml ├── LICENSE ├── README.md ├── docs ├── Makefile ├── conf.py ├── examples │ ├── Atom_Fitting.ipynb │ ├── DPC.ipynb │ ├── ImageSimulation.ipynb │ ├── Image_Registration.ipynb │ ├── Strain_4DSTEM.ipynb │ └── Strain_GPA.ipynb ├── index.rst ├── make.bat ├── modules.rst ├── requirements.txt ├── stemtool.afit.rst ├── stemtool.dpc.rst ├── stemtool.eels.rst ├── stemtool.gpa.rst ├── stemtool.nbed.rst ├── stemtool.rst ├── stemtool.sim.rst └── stemtool.util.rst ├── pyproject.toml └── stemtool ├── __init__.py ├── afit ├── __init__.py ├── atom_positions.py └── drift_corr.py ├── dpc ├── __init__.py ├── atomic_dpc.py ├── dpc_utils.py └── nbed_dpc.py ├── eels ├── __init__.py └── eels_tools.py ├── gpa ├── __init__.py └── gpa.py ├── nbed ├── __init__.py └── nbed_strain.py ├── sim ├── Kirkland_Potentials.npy ├── __init__.py └── multislice.py ├── timer.py └── util ├── __init__.py ├── fourier_reg.py ├── gauss_utils.py ├── image_utils.py 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