├── Arena.cpp ├── Arena_counter.cpp ├── AtomicClashes.hpp ├── AtomicClashes_counter.hpp ├── BaseConformation.hpp ├── BondLengths.hpp ├── Examples ├── 2koc.pdb ├── 2n3q.pdb ├── 5osg2.P.pdb ├── 5osg2.index ├── 5osg2.pdb ├── 6sg9CA.index └── 6sg9CA.pdb ├── GeometryTools.hpp ├── INF.py ├── IdealRNA.hpp ├── IdealRNA ├── 224.rna.pdb ├── ACGU.rna.pdb └── createIdealRNA2.py ├── Makefile ├── MissingRNAatom.hpp ├── PDBParser.hpp ├── README.md ├── Superpose.hpp ├── calculate_MAE.py ├── calculate_RMSD.py ├── cssr.hpp ├── pstream.h └── split_models.py /Arena.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pylelab/Arena/HEAD/Arena.cpp -------------------------------------------------------------------------------- /Arena_counter.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pylelab/Arena/HEAD/Arena_counter.cpp 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