├── .github └── workflows │ └── ci.yml ├── .gitignore ├── LICENSE ├── Makefile ├── README.md ├── docs ├── Makefile └── source │ ├── api.rst │ ├── conf.py │ ├── constraints.rst │ ├── criticism.rst │ ├── index.rst │ ├── internals.rst │ └── testing.rst ├── examples ├── README.md ├── immune_sequence.py ├── oed_vs_rand.png ├── plot_tf8_results.ipynb ├── rollout_tf8.py ├── tf8_criticism.ipynb └── tf8_demo.ipynb ├── pyroed ├── __init__.py ├── api.py ├── constraints.py ├── criticism.py ├── datasets │ ├── __init__.py │ ├── data.py │ └── tf_bind_8-PBX4_REF_R2.npy.gz ├── inference.py ├── models.py ├── oed.py ├── optimizers.py ├── py.typed ├── testing.py └── typing.py ├── setup.cfg ├── setup.py └── test ├── conftest.py ├── test_constraints.py └── test_e2e.py /.github/workflows/ci.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pyro-ppl/pyroed/HEAD/.github/workflows/ci.yml 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