├── .clang-format ├── .dockerignore ├── .github └── workflows │ └── build.yml ├── .gitignore ├── .gitmodules ├── CMake ├── DeployQt5.cmake ├── GitBranch.cmake ├── InstallQt5Plugin.cmake ├── rpavlik │ ├── GetGitRevisionDescription.cmake │ └── GetGitRevisionDescription.cmake.in └── standalone.cmake ├── CMakeLists.txt ├── COPYING ├── CTestConfig.cmake ├── Common ├── AbstractModel.cxx ├── AbstractModel.h ├── AbstractPropertyContainerModel.cxx ├── AbstractPropertyContainerModel.h ├── AffineTransformHelper.cxx ├── AffineTransformHelper.h ├── ColorLabelPropertyModel.cxx ├── ColorLabelPropertyModel.h ├── CommandLineArgumentParser.cxx ├── CommandLineArgumentParser.h ├── Credits.h ├── EventBucket.cxx ├── EventBucket.h ├── ExtendedGDCMSerieHelper.cxx ├── ExtendedGDCMSerieHelper.h ├── GPUSettings.h.in ├── HistoryManager.cxx ├── HistoryManager.h ├── IPCHandler.cxx ├── IPCHandler.h ├── IRISException.cxx ├── IRISException.h ├── IRISVectorTypes.h ├── IRISVectorTypes.txx ├── IRISVectorTypesToITKConversion.h ├── ITKBinaryWeightedAverage │ ├── itkBWAandRFinterpolation.h │ ├── itkBWAandRFinterpolation.hxx │ ├── itkBWAfilter.h │ ├── itkBWAfilter.hxx │ ├── itkComputeInterpolation.h │ ├── itkComputeInterpolation.txx │ ├── itkRFLabelMap.h │ ├── itkRFLabelMap.txx │ ├── itkRandomForest.h │ └── itkRandomForest.txx ├── ITKExtras │ ├── README.txt │ ├── itkBinaryDiamondStructuringElement.h │ ├── itkBinaryDiamondStructuringElement.txx │ ├── itkCoxDeBoorBSplineKernelFunction.h │ ├── itkCoxDeBoorBSplineKernelFunction.txx │ ├── itkMorphologicalContourInterpolator_old.h │ ├── itkMorphologicalContourInterpolator_old.hxx │ ├── itkParallelSparseFieldLevelSetImageFilterBugFix.h │ ├── itkParallelSparseFieldLevelSetImageFilterBugFix.txx │ ├── itkRepresentImageAsVectorImageFilter.h │ ├── itkTopologyPreservingDigitalSurfaceEvolutionImageFilter.h │ ├── itkTopologyPreservingDigitalSurfaceEvolutionImageFilter.txx │ ├── itkVoxBoCUBImageIO.cxx │ ├── itkVoxBoCUBImageIO.h │ ├── itkVoxBoCUBImageIOFactory.cxx │ └── itkVoxBoCUBImageIOFactory.h ├── ImageFunctions.cxx ├── ImageFunctions.h ├── JSon │ ├── README.md │ ├── json │ │ ├── json-forwards.h │ │ └── json.h │ └── jsoncpp.cpp ├── MultiFrameDicomSeriesSorter.cxx ├── MultiFrameDicomSeriesSorter.h ├── PresetManager.h ├── PresetManager.hxx ├── PropertyModel.h ├── Rebroadcaster.cxx ├── Rebroadcaster.h ├── Registry.cxx ├── Registry.h ├── SNAPBorlandDummyTypes.h ├── SNAPCommon.cxx.in ├── SNAPCommon.h ├── SNAPEventListenerCallbacks.h ├── SNAPEvents.cxx ├── SNAPEvents.h ├── SNAPExportITKToVTK.h ├── SystemInterface.cxx ├── SystemInterface.h ├── TagList.cxx ├── TagList.h ├── ThreadSpecificData.cxx ├── ThreadSpecificData.h └── tdigest_apache │ ├── common_defs.hpp │ ├── memory_operations.hpp │ ├── tdigest.hpp │ └── tdigest_impl.hpp ├── Documentation ├── DesignNotes │ └── gui_design.txt └── Shortcuts │ ├── Shortcuts_SNAP3.pages │ └── Shortcuts_SNAP3.pdf ├── GUI ├── Model │ ├── AbstractLayerAssociatedModel.h │ ├── AbstractLayerInfoItemSetDomain.h │ ├── AnnotationModel.cxx │ ├── AnnotationModel.h │ ├── CollectionModel.cxx │ ├── CollectionModel.h │ ├── ColorLabelQuickListModel.cxx │ ├── ColorLabelQuickListModel.h │ ├── ColorMapModel.cxx │ ├── ColorMapModel.h │ ├── CursorInspectionModel.cxx │ ├── CursorInspectionModel.h │ ├── DeepLearningSegmentationModel.cxx │ ├── DeepLearningSegmentationModel.h │ ├── DeformationGridModel.cxx │ ├── DeformationGridModel.h │ ├── DisplayLayoutModel.cxx │ ├── DisplayLayoutModel.h │ ├── DistributedSegmentationModel.cxx │ ├── DistributedSegmentationModel.h │ ├── Generic3DModel.cxx │ ├── Generic3DModel.h │ ├── GenericSliceModel.cxx │ ├── GenericSliceModel.h │ ├── GlobalPreferencesModel.cxx │ ├── GlobalPreferencesModel.h │ ├── GlobalUIModel.cxx │ ├── GlobalUIModel.h │ ├── ImageIOWizardModel.cxx │ ├── ImageIOWizardModel.h │ ├── ImageInfoModel.cxx │ ├── ImageInfoModel.h │ ├── IntensityCurveModel.cxx │ ├── IntensityCurveModel.h │ ├── InteractiveRegistrationModel.cxx │ ├── InteractiveRegistrationModel.h │ ├── InterpolateLabelModel.cxx │ ├── InterpolateLabelModel.h │ ├── LabelEditorModel.cxx │ ├── LabelEditorModel.h │ ├── LayerGeneralPropertiesModel.cxx │ ├── LayerGeneralPropertiesModel.h │ ├── LayerSelectionModel.cxx │ ├── LayerSelectionModel.h │ ├── LayerTableRowModel.cxx │ ├── LayerTableRowModel.h │ ├── MeshExportModel.cxx │ ├── MeshExportModel.h │ ├── MeshImportModel.cxx │ ├── MeshImportModel.h │ ├── NumericPropertyToggleAdaptor.h │ ├── OrthogonalSliceCursorNavigationModel.cxx │ ├── OrthogonalSliceCursorNavigationModel.h │ ├── PaintbrushModel.cxx │ ├── PaintbrushModel.h │ ├── PaintbrushSettingsModel.cxx │ ├── PaintbrushSettingsModel.h │ ├── PolygonDrawingModel.cxx │ ├── PolygonDrawingModel.h │ ├── PolygonSettingsModel.cxx │ ├── PolygonSettingsModel.h │ ├── RandomAccessCollectionModel.cxx │ ├── RandomAccessCollectionModel.h │ ├── RegistrationModel.cxx │ ├── RegistrationModel.h │ ├── RegistryEntryPropertyModel.h │ ├── ReorientImageModel.cxx │ ├── ReorientImageModel.h │ ├── SNAPUIFlag.h │ ├── SNAPUIFlag.txx │ ├── SaveModifiedLayersModel.cxx │ ├── SaveModifiedLayersModel.h │ ├── SliceWindowCoordinator.cxx │ ├── SliceWindowCoordinator.h │ ├── SmoothLabelsModel.cxx │ ├── SmoothLabelsModel.h │ ├── SnakeParameterModel.cxx │ ├── SnakeParameterModel.h │ ├── SnakeROIModel.cxx │ ├── SnakeROIModel.h │ ├── SnakeROIResampleModel.cxx │ ├── SnakeROIResampleModel.h │ ├── SnakeWizardModel.cxx │ ├── SnakeWizardModel.h │ ├── StateManagement.cxx │ ├── StateManagement.h │ ├── SynchronizationModel.cxx │ ├── SynchronizationModel.h │ ├── UIAction.cxx │ ├── UIAction.h │ ├── UIReporterDelegates.cxx │ ├── UIReporterDelegates.h │ ├── UIState.h │ ├── VoxelChangeReportModel.cxx │ └── VoxelChangeReportModel.h ├── Qt │ ├── Components │ │ ├── .DS_Store │ │ ├── AnnotationToolPanel.cxx │ │ ├── AnnotationToolPanel.h │ │ ├── AnnotationToolPanel.ui │ │ ├── CollapsableGroupBox.cxx │ │ ├── CollapsableGroupBox.h │ │ ├── CollapsableGroupBox.ui │ │ ├── ColorLabelQuickListWidget.cxx │ │ ├── ColorLabelQuickListWidget.h │ │ ├── ColorMapInspector.cxx │ │ ├── ColorMapInspector.h │ │ ├── ColorMapInspector.ui │ │ ├── ContrastInspector.cxx │ │ ├── ContrastInspector.h │ │ ├── ContrastInspector.ui │ │ ├── CursorInspector.cxx │ │ ├── CursorInspector.h │ │ ├── CursorInspector.ui │ │ ├── DICOMListingTable.cxx │ │ ├── DICOMListingTable.h │ │ ├── DarkModeToolbar.cxx │ │ ├── DarkModeToolbar.h │ │ ├── DeepLearningConnectionStatusCouplingTraits.h │ │ ├── DisplayLayoutInspector.cxx │ │ ├── DisplayLayoutInspector.h │ │ ├── DisplayLayoutInspector.ui │ │ ├── FileChooserPanelWithHistory.cxx │ │ ├── FileChooserPanelWithHistory.h │ │ ├── FileChooserPanelWithHistory.ui │ │ ├── GeneralLayerInspector.cxx │ │ ├── GeneralLayerInspector.h │ │ ├── GeneralLayerInspector.ui │ │ ├── HistoryQListModel.cxx │ │ ├── HistoryQListModel.h │ │ ├── ImageInfoInspector.cxx │ │ ├── ImageInfoInspector.h │ │ ├── ImageInfoInspector.ui │ │ ├── LabelInspector.cxx │ │ ├── LabelInspector.h │ │ ├── LabelInspector.ui │ │ ├── LabelMiniInspector.cxx │ │ ├── LabelMiniInspector.h │ │ ├── LabelMiniInspector.ui │ │ ├── LabelSelectionButton.cxx │ │ ├── LabelSelectionButton.h │ │ ├── LatentITKEventNotifier.cxx │ │ ├── LatentITKEventNotifier.h │ │ ├── LayerInspectorRowDelegate.cxx │ │ ├── LayerInspectorRowDelegate.h │ │ ├── LayerInspectorRowDelegate.ui │ │ ├── MetadataInspector.cxx │ │ ├── MetadataInspector.h │ │ ├── MetadataInspector.ui │ │ ├── PaintbrushToolPanel.cxx │ │ ├── PaintbrushToolPanel.h │ │ ├── PaintbrushToolPanel.ui │ │ ├── PolygonToolPanel.cxx │ │ ├── PolygonToolPanel.h │ │ ├── PolygonToolPanel.ui │ │ ├── ProcessEventsITKCommand.h │ │ ├── QActionButton.cxx │ │ ├── QActionButton.h │ │ ├── QColorButtonWidget.cxx │ │ ├── QColorButtonWidget.h │ │ ├── QDoubleSlider.cxx │ │ ├── QDoubleSlider.h │ │ ├── QDoubleSliderWithEditor.cxx │ │ ├── QDoubleSliderWithEditor.h │ │ ├── QDoubleSliderWithEditor.ui │ │ ├── QPainterRenderContext.cxx │ │ ├── QPainterRenderContext.h │ │ ├── QProcessOutputTextWidget.cxx │ │ ├── QProcessOutputTextWidget.h │ │ ├── QtCursorOverride.h │ │ ├── QtFlowLayout.cxx │ │ ├── QtFlowLayout.h │ │ ├── QtFrameBufferOpenGLWidget.cxx │ │ ├── QtFrameBufferOpenGLWidget.h │ │ ├── QtHideOnDeactivateContainer.cxx │ │ ├── QtHideOnDeactivateContainer.h │ │ ├── QtIPCManager.cxx │ │ ├── QtIPCManager.h │ │ ├── QtLocalDeepLearningServerDelegate.cxx │ │ ├── QtLocalDeepLearningServerDelegate.h │ │ ├── QtRendererPlatformSupport.cxx │ │ ├── QtRendererPlatformSupport.h │ │ ├── QtReporterDelegates.cxx │ │ ├── QtReporterDelegates.h │ │ ├── QtWarningDialog.cxx │ │ ├── QtWarningDialog.h │ │ ├── QtWarningDialog.ui │ │ ├── QtWidgetActivator.cxx │ │ ├── QtWidgetActivator.h │ │ ├── RecentHistoryItemsView.cxx │ │ ├── RecentHistoryItemsView.h │ │ ├── RecentHistoryItemsView.ui │ │ ├── SNAPComponent.cxx │ │ ├── SNAPComponent.h │ │ ├── SNAPQApplication.cxx │ │ ├── SNAPQApplication.h │ │ ├── SNAPQtCommon.cxx │ │ ├── SNAPQtCommon.h │ │ ├── SNAPQtCommonTranslations.cxx │ │ ├── SNAPQtCommonTranslations.h │ │ ├── SNAPToolbar.cxx │ │ ├── SNAPToolbar.h │ │ ├── SSHTunnelWorkerThread.cxx │ │ ├── SSHTunnelWorkerThread.h │ │ ├── SliceViewPanel.cxx │ │ ├── SliceViewPanel.h │ │ ├── SliceViewPanel.ui │ │ ├── SnakeToolROIPanel.cxx │ │ ├── SnakeToolROIPanel.h │ │ ├── SnakeToolROIPanel.ui │ │ ├── SnakeWizardPanel.cxx │ │ ├── SnakeWizardPanel.h │ │ ├── SnakeWizardPanel.ui │ │ ├── SynchronizationInspector.cxx │ │ ├── SynchronizationInspector.h │ │ ├── SynchronizationInspector.ui │ │ ├── TagListWidget.cxx │ │ ├── TagListWidget.h │ │ ├── ViewPanel3D.cxx │ │ ├── ViewPanel3D.h │ │ ├── ViewPanel3D.ui │ │ ├── VoxelIntensityQTableModel.cxx │ │ ├── VoxelIntensityQTableModel.h │ │ ├── ZoomInspector.cxx │ │ ├── ZoomInspector.h │ │ └── ZoomInspector.ui │ ├── Coupling │ │ ├── QtAbstractButtonCoupling.h │ │ ├── QtAbstractItemViewCoupling.h │ │ ├── QtActionCoupling.h │ │ ├── QtActionGroupCoupling.h │ │ ├── QtCheckBoxCoupling.h │ │ ├── QtCheckableWidgetGroupCoupling.h │ │ ├── QtColorWheelCoupling.h │ │ ├── QtComboBoxCoupling.h │ │ ├── QtDoubleSliderWithEditorCoupling.h │ │ ├── QtDoubleSpinBoxCoupling.h │ │ ├── QtLabelCoupling.h │ │ ├── QtLineEditCoupling.h │ │ ├── QtListWidgetCoupling.h │ │ ├── QtMenuCoupling.h │ │ ├── QtPagedWidgetCoupling.h │ │ ├── QtProgressBarCoupling.h │ │ ├── QtRadioButtonCoupling.h │ │ ├── QtScrollbarCoupling.h │ │ ├── QtSliderCoupling.h │ │ ├── QtSpinBoxCoupling.h │ │ ├── QtTableWidgetCoupling.cxx │ │ ├── QtTableWidgetCoupling.h │ │ ├── QtToolbarCoupling.h │ │ ├── QtWidgetArrayCoupling.h │ │ ├── QtWidgetCoupling.h │ │ └── TagListWidgetCoupling.h │ ├── External │ │ └── ColorWheel │ │ │ ├── ColorWheel.cxx │ │ │ └── ColorWheel.h │ ├── ModelView │ │ ├── GMMTableModel.cxx │ │ └── GMMTableModel.h │ ├── Resources │ │ ├── COPYING │ │ ├── SNAPResources.qrc │ │ ├── SNAPResources_Linux.qrc │ │ ├── SNAPResources_MacOS.qrc │ │ ├── SNAPResources_Windows.qrc │ │ ├── annotation_28.png │ │ ├── arrow_down_16.png │ │ ├── arrow_up_16.png │ │ ├── brush_shape_adaptive.png │ │ ├── brush_shape_round.png │ │ ├── brush_shape_square.png │ │ ├── color_bar.png │ │ ├── combo_all_labels.png │ │ ├── combo_visible_labels.png │ │ ├── configure.png │ │ ├── context_gray_10.png │ │ ├── context_gray_10@2x.png │ │ ├── context_gray_12.png │ │ ├── context_gray_12@2x.png │ │ ├── context_gray_16.png │ │ ├── context_gray_48.png │ │ ├── credits.html │ │ ├── crosshair.gif │ │ ├── crosshair3D.gif │ │ ├── crosshair3Dtiny.gif │ │ ├── crosshair_cursor_bitmap.png │ │ ├── crosshair_cursor_mask.png │ │ ├── delete_22.png │ │ ├── dl_3d.png │ │ ├── dl_axial.png │ │ ├── dl_coronal.png │ │ ├── dl_fourviews.png │ │ ├── dl_sagittal.png │ │ ├── dl_toolbox.png │ │ ├── dlg_error_32.png │ │ ├── dlg_warning_32.png │ │ ├── edgefunction.png │ │ ├── expand_16.png │ │ ├── fancyslider.css │ │ ├── fltkbutton.png │ │ ├── fltkbutton_pressed.png │ │ ├── fltkpanel.png │ │ ├── formula01.gif │ │ ├── formula02.gif │ │ ├── formula03.gif │ │ ├── gear_16.png │ │ ├── gear_16@x2.png │ │ ├── html │ │ │ ├── components.html │ │ │ ├── external_citations.md │ │ │ ├── splash.html │ │ │ └── tooltips │ │ │ │ ├── ModeTipTemplate.html │ │ │ │ └── TipTableRow.html │ │ ├── icons8-camera-12.png │ │ ├── icons8-camera-12@x2.png │ │ ├── icons8_attach_16.png │ │ ├── icons8_attach_16@2x.png │ │ ├── icons8_close_16.png │ │ ├── icons8_cloud_connection_16.png │ │ ├── icons8_cloud_connection_16@2x.png │ │ ├── icons8_cursor_16.png │ │ ├── icons8_cursor_16@2x.png │ │ ├── icons8_delete_sign_16.png │ │ ├── icons8_delete_sign_16@2x.png │ │ ├── icons8_down_12.png │ │ ├── icons8_down_12@x2.png │ │ ├── icons8_down_18.png │ │ ├── icons8_error_16.png │ │ ├── icons8_error_16@2x.png │ │ ├── icons8_fantasy_16.png │ │ ├── icons8_film_reel_12.png │ │ ├── icons8_film_reel_12@2x.png │ │ ├── icons8_flip_vertical_16.png │ │ ├── icons8_flip_vertical_16@2x.png │ │ ├── icons8_generic_text_16.png │ │ ├── icons8_generic_text_16@2x.png │ │ ├── icons8_info_16.png │ │ ├── icons8_info_16@2x.png │ │ ├── icons8_invisible_12.png │ │ ├── icons8_invisible_12@2x.png │ │ ├── icons8_invisible_16.png │ │ ├── icons8_layers_16.png │ │ ├── icons8_layers_16@2x.png │ │ ├── icons8_local_computer_16.png │ │ ├── icons8_local_computer_16@2x.png │ │ ├── icons8_mouse_left_click_16.png │ │ ├── icons8_mouse_left_click_16@2x.png │ │ ├── icons8_mouse_right_click_16.png │ │ ├── icons8_mouse_right_click_16@2x.png │ │ ├── icons8_mouse_scrolling_16.png │ │ ├── icons8_mouse_scrolling_16@2x.png │ │ ├── icons8_no_entry_16.png │ │ ├── icons8_no_entry_16@2x.png │ │ ├── icons8_opened_folder_16.png │ │ ├── icons8_opened_folder_16@2x.png │ │ ├── icons8_palette_16.png │ │ ├── icons8_palette_16@2x.png │ │ ├── icons8_pin-48.png │ │ ├── icons8_pin_10.png │ │ ├── icons8_pin_12.png │ │ ├── icons8_pin_12@2x.png │ │ ├── icons8_pin_16.png │ │ ├── icons8_plus_16.png │ │ ├── icons8_plus_16@2x.png │ │ ├── icons8_redo-48.png │ │ ├── icons8_refresh-48.png │ │ ├── icons8_reset_16.png │ │ ├── icons8_reset_16@2x.png │ │ ├── icons8_ruler_16.png │ │ ├── icons8_ruler_16@2x.png │ │ ├── icons8_slr_camera_12.png │ │ ├── icons8_slr_camera_12@2x.png │ │ ├── icons8_slr_camera_16.png │ │ ├── icons8_slr_camera_16@2x.png │ │ ├── icons8_star-48.png │ │ ├── icons8_star_12.png │ │ ├── icons8_star_8.png │ │ ├── icons8_swap_12.png │ │ ├── icons8_swap_12@2x.png │ │ ├── icons8_undo-48.png │ │ ├── icons8_unpin_12.png │ │ ├── icons8_unpin_12@2x.png │ │ ├── icons8_unpin_16.png │ │ ├── icons8_up_12.png │ │ ├── icons8_up_12@x2.png │ │ ├── icons8_up_18.png │ │ ├── icons8_video_camera_16.png │ │ ├── icons8_video_camera_16@2x.png │ │ ├── icons8_video_camera_pad_16.png │ │ ├── icons8_video_camera_pad_16@2x.png │ │ ├── icons8_visible_12.png │ │ ├── icons8_visible_12@2x.png │ │ ├── icons8_visible_16.png │ │ ├── icons8_whitepin_16.png │ │ ├── icons8_zoomin_16.png │ │ ├── icons8_zoomout_16.png │ │ ├── icontabwidget.css │ │ ├── itkLogoSmallTransparentBackground.gif │ │ ├── itksnap.css │ │ ├── itksnap.qss │ │ ├── layer_Inspector_16.png │ │ ├── layer_invisible_16.png │ │ ├── layer_visible_16.png │ │ ├── layout_axial_lr.png │ │ ├── layout_axial_rl.png │ │ ├── layout_coronal_lr.png │ │ ├── layout_coronal_rl.png │ │ ├── layout_orientation_ap.png │ │ ├── layout_orientation_lr.png │ │ ├── layout_orientation_pa.png │ │ ├── layout_orientation_rl.png │ │ ├── layout_overlay_16.png │ │ ├── layout_sagittal_ap.png │ │ ├── layout_sagittal_pa.png │ │ ├── layout_thumb_16.png │ │ ├── layout_tile_16.png │ │ ├── license.txt │ │ ├── lock_blue_16.png │ │ ├── lock_gray_16.png │ │ ├── logo.gif │ │ ├── logo_dkfz.png │ │ ├── logo_helmholz.png │ │ ├── logo_new.gif │ │ ├── logo_square.png │ │ ├── logo_square_shadow.png │ │ ├── mb_left.png │ │ ├── media-playback-pause-4.png │ │ ├── media-playback-singlestep.png │ │ ├── media-playback-start-10x-4.png │ │ ├── media-playback-start-1x-4.png │ │ ├── media-playback-start-4.png │ │ ├── media-playback-stop-4.png │ │ ├── media-seek-backward-4.png │ │ ├── media-skip-forward-4.png │ │ ├── menu-arrow.png │ │ ├── menu-arrow_8.png │ │ ├── menu-arrow_8@2x.png │ │ ├── mesh_cell_data.png │ │ ├── mesh_point_data.png │ │ ├── network-wireless.png │ │ ├── nnInteractive.png │ │ ├── nnInteractive@2x.png │ │ ├── open_22.png │ │ ├── open_popup_16.png │ │ ├── outputintensity.gif │ │ ├── paintbrush.gif │ │ ├── poly.gif │ │ ├── popup_clear_16.png │ │ ├── popup_delete_16.png │ │ ├── popup_edit_16.png │ │ ├── popup_ok_16.png │ │ ├── popup_paste_16.png │ │ ├── popup_split_16.png │ │ ├── popup_undo_16.png │ │ ├── ra.gif │ │ ├── rb.gif │ │ ├── rc.gif │ │ ├── redo_22.png │ │ ├── reslice_16.png │ │ ├── reslice_16@2x.png │ │ ├── revertaxis_16.png │ │ ├── rotate3d.gif │ │ ├── rotate3dTiny.gif │ │ ├── save_22.png │ │ ├── scalpel.gif │ │ ├── screencapture.gif │ │ ├── screencapture2.gif │ │ ├── snake.gif │ │ ├── snap_splash_172.png │ │ ├── snapres │ │ │ ├── EdgeForcesExample.png │ │ │ ├── RegionForcesExample.png │ │ │ └── SnakeParameterPreviewCurve.txt │ │ ├── source │ │ │ ├── CVS │ │ │ │ ├── Entries │ │ │ │ ├── Repository │ │ │ │ └── Root │ │ │ ├── annotation_28.graffle │ │ │ └── snaplogo_gimp.xcf.gz │ │ ├── speed_bluegray.png │ │ ├── speed_redoverlay.png │ │ ├── spray.gif │ │ ├── thresh_both.png │ │ ├── thresh_lower.png │ │ ├── thresh_upper.png │ │ ├── tools.png │ │ ├── triangle_small_down_16.png │ │ ├── triangle_small_right_16.png │ │ ├── undo_22.png │ │ ├── view-refresh-4.png │ │ ├── zoom.gif │ │ └── zoom3d.gif │ ├── Translations │ │ ├── itksnap_de.ts │ │ ├── itksnap_en.ts │ │ ├── itksnap_es.ts │ │ └── itksnap_zh_CN.ts │ ├── View │ │ ├── AnnotationInteractionMode.cxx │ │ ├── AnnotationInteractionMode.h │ │ ├── ColorMapInteractionDelegate.cxx │ │ ├── ColorMapInteractionDelegate.h │ │ ├── CrosshairsInteractionMode.cxx │ │ ├── CrosshairsInteractionMode.h │ │ ├── GenericView3D.cxx │ │ ├── GenericView3D.h │ │ ├── InteractionMode.cxx │ │ ├── InteractionMode.h │ │ ├── InteractionModeClient.cxx │ │ ├── InteractionModeClient.h │ │ ├── PaintbrushInteractionMode.cxx │ │ ├── PaintbrushInteractionMode.h │ │ ├── PolygonDrawingInteractionMode.cxx │ │ ├── PolygonDrawingInteractionMode.h │ │ ├── QtInteractionDelegateWidget.cxx │ │ ├── QtInteractionDelegateWidget.h │ │ ├── QtVTKInteractionDelegateWidget.cxx │ │ ├── QtVTKInteractionDelegateWidget.h │ │ ├── QtVTKRenderWindowBox.cxx │ │ ├── QtVTKRenderWindowBox.h │ │ ├── RegistrationInteractionMode.cxx │ │ ├── RegistrationInteractionMode.h │ │ ├── SliceWindowInteractionDelegateWidget.cxx │ │ ├── SliceWindowInteractionDelegateWidget.h │ │ ├── SnakeROIInteractionMode.cxx │ │ ├── SnakeROIInteractionMode.h │ │ ├── TestOpenGLDialog.h │ │ ├── ThumbnailInteractionMode.cxx │ │ └── ThumbnailInteractionMode.h │ ├── Windows │ │ ├── .DS_Store │ │ ├── AboutDialog.cxx │ │ ├── AboutDialog.h │ │ ├── AboutDialog.ui │ │ ├── AnnotationEditDialog.cxx │ │ ├── AnnotationEditDialog.h │ │ ├── AnnotationEditDialog.ui │ │ ├── DSS │ │ │ ├── DistributedSegmentationDialog.cxx │ │ │ ├── DistributedSegmentationDialog.h │ │ │ ├── DistributedSegmentationDialog.ui │ │ │ ├── DownloadTicketDialog.cxx │ │ │ ├── DownloadTicketDialog.h │ │ │ └── DownloadTicketDialog.ui │ │ ├── DeepLearningInfoDialog.cxx │ │ ├── DeepLearningInfoDialog.h │ │ ├── DeepLearningInfoDialog.ui │ │ ├── DeepLearningServerEditor.cxx │ │ ├── DeepLearningServerEditor.h │ │ ├── DeepLearningServerEditor.ui │ │ ├── DeepLearningServerPanel.cxx │ │ ├── DeepLearningServerPanel.h │ │ ├── DeepLearningServerPanel.ui │ │ ├── DropActionDialog.cxx │ │ ├── DropActionDialog.h │ │ ├── DropActionDialog.ui │ │ ├── ImageIODialog.cxx │ │ ├── ImageIODialog.h │ │ ├── ImageIODialog.ui │ │ ├── ImageIOWizard.cxx │ │ ├── ImageIOWizard.h │ │ ├── ImageIOWizard │ │ │ ├── OverlayRolePage.cxx │ │ │ ├── OverlayRolePage.h │ │ │ └── OverlayRolePage.ui │ │ ├── ImageIOWizardSummaryPage.ui │ │ ├── InterpolateLabelsDialog.cxx │ │ ├── InterpolateLabelsDialog.h │ │ ├── InterpolateLabelsDialog.ui │ │ ├── LabelEditorDialog.cxx │ │ ├── LabelEditorDialog.h │ │ ├── LabelEditorDialog.ui │ │ ├── LabelSelectionPopup.cxx │ │ ├── LabelSelectionPopup.h │ │ ├── LabelSelectionPopup.ui │ │ ├── LayerInspectorDialog.cxx │ │ ├── LayerInspectorDialog.h │ │ ├── LayerInspectorDialog.ui │ │ ├── LayoutReminderDialog.cxx │ │ ├── LayoutReminderDialog.h │ │ ├── LayoutReminderDialog.ui │ │ ├── LoadTransformationDialog.cxx │ │ ├── LoadTransformationDialog.h │ │ ├── LoadTransformationDialog.ui │ │ ├── MainControlPanel.cxx │ │ ├── MainControlPanel.h │ │ ├── MainControlPanel.ui │ │ ├── MainImageWindow.cxx │ │ ├── MainImageWindow.h │ │ ├── MainImageWindow.ui │ │ ├── MeshExportWizard │ │ │ ├── MeshExportBrowsePage.cxx │ │ │ ├── MeshExportBrowsePage.h │ │ │ ├── MeshExportBrowsePage.ui │ │ │ ├── MeshExportModePage.cxx │ │ │ ├── MeshExportModePage.h │ │ │ ├── MeshExportModePage.ui │ │ │ ├── MeshExportWizard.cxx │ │ │ ├── MeshExportWizard.h │ │ │ └── MeshExportWizard.ui │ │ ├── MeshImportWizard │ │ │ ├── MeshImportFileSelectionPage.cxx │ │ │ ├── MeshImportFileSelectionPage.h │ │ │ ├── MeshImportFileSelectionPage.ui │ │ │ ├── MeshImportWizard.cxx │ │ │ ├── MeshImportWizard.h │ │ │ └── MeshImportWizard.ui │ │ ├── PreferencesDialog.cxx │ │ ├── PreferencesDialog.h │ │ ├── PreferencesDialog.ui │ │ ├── QtStyles.cxx │ │ ├── QtStyles.h │ │ ├── Registration │ │ │ ├── RegistrationDialog.cxx │ │ │ ├── RegistrationDialog.h │ │ │ └── RegistrationDialog.ui │ │ ├── ReorientImageDialog.cxx │ │ ├── ReorientImageDialog.h │ │ ├── ReorientImageDialog.ui │ │ ├── ResampleDialog.cxx │ │ ├── ResampleDialog.h │ │ ├── ResampleDialog.ui │ │ ├── SaveModifiedLayersDialog.cxx │ │ ├── SaveModifiedLayersDialog.h │ │ ├── SaveModifiedLayersDialog.ui │ │ ├── SimpleFileDialogWithHistory.cxx │ │ ├── SimpleFileDialogWithHistory.h │ │ ├── SimpleFileDialogWithHistory.ui │ │ ├── SmoothLabelsDialog.cxx │ │ ├── SmoothLabelsDialog.h │ │ ├── SmoothLabelsDialog.ui │ │ ├── SnakeParameterDialog.cxx │ │ ├── SnakeParameterDialog.h │ │ ├── SnakeParameterDialog.ui │ │ ├── SpeedImageDialog.cxx │ │ ├── SpeedImageDialog.h │ │ ├── SpeedImageDialog.ui │ │ ├── SplashPanel.cxx │ │ ├── SplashPanel.h │ │ ├── SplashPanel.ui │ │ ├── StatisticsDialog.cxx │ │ ├── StatisticsDialog.h │ │ ├── StatisticsDialog.ui │ │ ├── VoxelChangeReportDialog.cxx │ │ ├── VoxelChangeReportDialog.h │ │ └── VoxelChangeReportDialog.ui │ └── main.cxx └── Renderer │ ├── AbstractContextBasedRenderer.h │ ├── AbstractRenderer.cxx │ ├── AbstractRenderer.h │ ├── AbstractVTKRenderer.cxx │ ├── AbstractVTKRenderer.h │ ├── AbstractVTKSceneRenderer.cxx │ ├── AbstractVTKSceneRenderer.h │ ├── AnnotationRenderer.cxx │ ├── AnnotationRenderer.h │ ├── ColorMapRenderer.cxx │ ├── ColorMapRenderer.h │ ├── CrosshairsRenderer.cxx │ ├── CrosshairsRenderer.h │ ├── DeformationGridRenderer.cxx │ ├── DeformationGridRenderer.h │ ├── EdgePreprocessingSettingsRenderer.cxx │ ├── EdgePreprocessingSettingsRenderer.h │ ├── GLToPNG.cxx │ ├── GLToPNG.h │ ├── GMMRenderer.cxx │ ├── GMMRenderer.h │ ├── Generic3DRenderer.cxx │ ├── Generic3DRenderer.h │ ├── GenericSliceRenderer.cxx │ ├── GenericSliceRenderer.h │ ├── IntensityCurveVTKRenderer.cxx │ ├── IntensityCurveVTKRenderer.h │ ├── IntensityUnderCursorRenderer.cxx │ ├── IntensityUnderCursorRenderer.h │ ├── LayerHistogramPlotAssembly.cxx │ ├── LayerHistogramPlotAssembly.h │ ├── OptimizationProgressRenderer.cxx │ ├── OptimizationProgressRenderer.h │ ├── OrientationGraphicRenderer.cxx │ ├── OrientationGraphicRenderer.h │ ├── OrientationWidget │ ├── Reorient │ │ ├── AbstractScannerHelper.cxx │ │ ├── AbstractScannerHelper.h │ │ ├── AxesWidget.cxx │ │ ├── AxesWidget.h │ │ ├── PolyDataAlgorithm2ActorPipe.cxx │ │ ├── PolyDataAlgorithm2ActorPipe.h │ │ ├── ReorientProps.cxx │ │ ├── ReorientProps.h │ │ ├── ScannedHuman.cxx │ │ ├── ScannedHuman.h │ │ ├── ScanningROI.cxx │ │ └── ScanningROI.h │ ├── Test_OrientationWidget │ │ ├── CMakeLists.txt │ │ ├── OrientationWidgetGUI.cxx │ │ ├── OrientationWidgetGUI.h │ │ ├── OrientationWidgetGUI.ui │ │ └── main.cxx │ └── Test_ReorientGUI │ │ ├── CMakeLists.txt │ │ ├── Reorient.cxx │ │ ├── Reorient.h │ │ ├── ReorientGUI.cxx │ │ ├── ReorientGUI.h │ │ ├── ReorientGUI.ui │ │ └── main.cxx │ ├── PaintbrushRenderer.cxx │ ├── PaintbrushRenderer.h │ ├── PolygonDrawingRenderer.cxx │ ├── PolygonDrawingRenderer.h │ ├── PolygonScanConvert.h │ ├── PolygonVTKProp2D.cxx │ ├── PolygonVTKProp2D.h │ ├── RegistrationRenderer.cxx │ ├── RegistrationRenderer.h │ ├── SliceWindowDecorationRenderer.cxx │ ├── SliceWindowDecorationRenderer.h │ ├── SnakeModeRenderer.cxx │ ├── SnakeModeRenderer.h │ ├── SnakeParameterPreviewRenderer.cxx │ ├── SnakeParameterPreviewRenderer.h │ ├── SnakeROIRenderer.cxx │ ├── SnakeROIRenderer.h │ ├── TexturedRectangleAssembly.cxx │ ├── TexturedRectangleAssembly.h │ ├── ThresholdSettingsRenderer.cxx │ ├── ThresholdSettingsRenderer.h │ ├── TiledViewportVTKRenderer.cxx │ ├── TiledViewportVTKRenderer.h │ ├── VTKRenderGeometry.cxx │ ├── VTKRenderGeometry.h │ ├── Window3DPicker.cxx │ └── Window3DPicker.h ├── Logic ├── Common │ ├── BrushWatershedPipeline.hxx │ ├── ColorLabel.h │ ├── ColorLabelTable.cxx │ ├── ColorLabelTable.h │ ├── ColorMap.cxx │ ├── ColorMap.h │ ├── ColorMapPresetManager.cxx │ ├── ColorMapPresetManager.h │ ├── IRISDisplayGeometry.cxx │ ├── IRISDisplayGeometry.h │ ├── ImageCoordinateGeometry.cxx │ ├── ImageCoordinateGeometry.h │ ├── ImageCoordinateTransform.cxx │ ├── ImageCoordinateTransform.h │ ├── ImageRayIntersectionFinder.h │ ├── ImageRayIntersectionFinder.txx │ ├── LabelUseHistory.cxx │ ├── LabelUseHistory.h │ ├── MetaDataAccess.cxx │ ├── MetaDataAccess.h │ ├── SNAPAppearanceSettings.cxx │ ├── SNAPAppearanceSettings.h │ ├── SNAPRegistryIO.cxx │ ├── SNAPRegistryIO.h │ ├── SNAPSegmentationROISettings.cxx │ ├── SNAPSegmentationROISettings.h │ ├── SegmentationStatistics.cxx │ └── SegmentationStatistics.h ├── Framework │ ├── DefaultBehaviorSettings.cxx │ ├── DefaultBehaviorSettings.h │ ├── GenericImageData.cxx │ ├── GenericImageData.h │ ├── GlobalState.cxx │ ├── GlobalState.h │ ├── IRISApplication.cxx │ ├── IRISApplication.h │ ├── IRISImageData.cxx │ ├── IRISImageData.h │ ├── ImageAnnotationData.cxx │ ├── ImageAnnotationData.h │ ├── ImageIODelegates.cxx │ ├── ImageIODelegates.h │ ├── LayerAssociation.h │ ├── LayerAssociation.txx │ ├── LayerIterator.cxx │ ├── LayerIterator.h │ ├── SNAPImageData.cxx │ ├── SNAPImageData.h │ ├── SegmentationUpdateIterator.h │ ├── TimePointProperties.cxx │ ├── TimePointProperties.h │ ├── UndoDataManager.h │ ├── UndoDataManager.txx │ └── UndoDataManager_LabelType.cxx ├── ImageWrapper │ ├── CPUImageToGPUImageFilter.h │ ├── CPUImageToGPUImageFilter.hxx │ ├── ChangeImageDimensionTraits.h │ ├── DisplayMappingPolicy.cxx │ ├── DisplayMappingPolicy.h │ ├── GuidedNativeImageIO.cxx │ ├── GuidedNativeImageIO.h │ ├── ImageWrapper.cxx │ ├── ImageWrapper.h │ ├── ImageWrapperBase.cxx │ ├── ImageWrapperBase.h │ ├── ImageWrapperPartialSpecialization.h │ ├── ImageWrapperTraits.cxx │ ├── ImageWrapperTraits.h │ ├── IncreaseDimensionImageFilter.h │ ├── IncreaseDimensionImageFilter.txx │ ├── InputSelectionImageFilter.h │ ├── InputSelectionImageFilter.txx │ ├── LabelImageWrapper.cxx │ ├── LabelImageWrapper.h │ ├── LabelToRGBAFilter.h │ ├── MeshDisplayMappingPolicy.cxx │ ├── MeshDisplayMappingPolicy.h │ ├── MultiChannelDisplayMode.cxx │ ├── MultiChannelDisplayMode.h │ ├── NativeIntensityMappingPolicy.h │ ├── ScalarImageHistogram.cxx │ ├── ScalarImageHistogram.h │ ├── ScalarImageWrapper.cxx │ ├── ScalarImageWrapper.h │ ├── TDigestImageFilter.h │ ├── TDigestImageFilter.hxx │ ├── ThreadedHistogramImageFilter.h │ ├── ThreadedHistogramImageFilter.hxx │ ├── UnaryValueToValueFilter.h │ ├── VectorImageWrapper.cxx │ ├── VectorImageWrapper.h │ ├── VectorToScalarImageAccessor.h │ ├── WrapperBase.cxx │ └── WrapperBase.h ├── LevelSet │ ├── LevelSetExtensionFilter.h │ ├── SNAPAdvectionFieldImageFilter.h │ ├── SNAPAdvectionFieldImageFilter.txx │ ├── SNAPLevelSetDriver.h │ ├── SNAPLevelSetDriver.txx │ ├── SNAPLevelSetFunction.h │ ├── SNAPLevelSetFunction.txx │ ├── SNAPLevelSetStopAndGoFilter.h │ ├── SNAPLevelSetStopAndGoFilter.txx │ ├── SnakeParameters.cxx │ ├── SnakeParameters.h │ ├── SnakeParametersPreviewPipeline.cxx │ └── SnakeParametersPreviewPipeline.h ├── Mesh │ ├── ActorPool.cxx │ ├── ActorPool.h │ ├── AllPurposeProgressAccumulator.cxx │ ├── AllPurposeProgressAccumulator.h │ ├── GuidedMeshIO.cxx │ ├── GuidedMeshIO.h │ ├── ImageMeshLayers.cxx │ ├── ImageMeshLayers.h │ ├── LevelSetMeshPipeline.cxx │ ├── LevelSetMeshPipeline.h │ ├── LevelSetMeshWrapper.cxx │ ├── LevelSetMeshWrapper.h │ ├── MeshDataArrayProperty.cxx │ ├── MeshDataArrayProperty.h │ ├── MeshExportSettings.h │ ├── MeshIODelegates.cxx │ ├── MeshIODelegates.h │ ├── MeshManager.cxx │ ├── MeshManager.h │ ├── MeshOptions.cxx │ ├── MeshOptions.h │ ├── MeshWrapperBase.cxx │ ├── MeshWrapperBase.h │ ├── MultiLabelMeshPipeline.cxx │ ├── MultiLabelMeshPipeline.h │ ├── SegmentationMeshWrapper.cxx │ ├── SegmentationMeshWrapper.h │ ├── StandaloneMeshWrapper.cxx │ ├── StandaloneMeshWrapper.h │ ├── VTKMeshPipeline.cxx │ └── VTKMeshPipeline.h ├── Preprocessing │ ├── EdgePreprocessingImageFilter.h │ ├── EdgePreprocessingImageFilter.txx │ ├── EdgePreprocessingSettings.cxx │ ├── EdgePreprocessingSettings.h │ ├── GMM │ │ ├── EMGaussianMixtures.cxx │ │ ├── EMGaussianMixtures.h │ │ ├── Gaussian.cxx │ │ ├── Gaussian.h │ │ ├── GaussianMixtureModel.cxx │ │ ├── GaussianMixtureModel.h │ │ ├── KMeansPlusPlus.cxx │ │ ├── KMeansPlusPlus.h │ │ ├── UnsupervisedClustering.cxx │ │ └── UnsupervisedClustering.h │ ├── GMMClassifyImageFilter.h │ ├── GMMClassifyImageFilter.txx │ ├── ImageCollectionToImageFilter.h │ ├── PreprocessingFilterConfigTraits.cxx │ ├── PreprocessingFilterConfigTraits.h │ ├── RFClassificationEngine.cxx │ ├── RFClassificationEngine.h │ ├── SlicePreviewFilterWrapper.h │ ├── SlicePreviewFilterWrapper.txx │ ├── SmoothBinaryThresholdImageFilter.h │ ├── SmoothBinaryThresholdImageFilter.txx │ ├── Texture │ │ ├── MomentTextures.cxx │ │ └── MomentTextures.h │ ├── ThresholdSettings.cxx │ └── ThresholdSettings.h ├── RLEImage │ ├── RLEImage.h │ ├── RLEImage.txx │ ├── RLEImageConstIterator.h │ ├── RLEImageIterator.h │ ├── RLEImageRegionConstIterator.h │ ├── RLEImageRegionIterator.h │ ├── RLEImageScanlineConstIterator.h │ ├── RLEImageScanlineIterator.h │ ├── RLERegionOfInterestImageFilter.h │ └── RLERegionOfInterestImageFilter.txx ├── Slicing │ ├── AdaptiveSlicingPipeline.h │ ├── AdaptiveSlicingPipeline.txx │ ├── ColorLookupTable.cxx │ ├── ColorLookupTable.h │ ├── DrawTriangles.cxx │ ├── DrawTriangles.h │ ├── FastLinearInterpolator.h │ ├── IRISSlicer.h │ ├── IRISSlicer.txx │ ├── IRISSlicer_RLE.txx │ ├── ImageMechanicsTraits │ │ └── ImageMechanicsTraits.h │ ├── ImageRegionConstIteratorWithIndexOverride.h │ ├── IntensityCurveInterface.h │ ├── IntensityCurveVTK.cxx │ ├── IntensityCurveVTK.h │ ├── IntensityToColorLookupTableImageFilter.cxx │ ├── IntensityToColorLookupTableImageFilter.h │ ├── LookupTableIntensityMappingFilter.cxx │ ├── LookupTableIntensityMappingFilter.h │ ├── MultiComponentImageToScalarLookupTableImageFilter.cxx │ ├── MultiComponentImageToScalarLookupTableImageFilter.h │ ├── NonOrthogonalSlicer.h │ ├── NonOrthogonalSlicer.txx │ ├── RGBALookupTableIntensityMappingFilter.cxx │ └── RGBALookupTableIntensityMappingFilter.h └── WorkspaceAPI │ ├── CSVParser.cxx │ ├── CSVParser.h │ ├── FormattedTable.cxx │ ├── FormattedTable.h │ ├── RESTClient.cxx │ ├── RESTClient.h │ ├── SSHTunnel.cxx │ ├── SSHTunnel.h │ ├── WorkspaceAPI.cxx │ ├── WorkspaceAPI.h │ └── base64.h ├── ProgramData ├── CMakeLists.txt ├── HTMLHelp │ ├── Artwork │ │ ├── CMakeLists.txt │ │ ├── ttAutoIntroEdgesPicture.gif │ │ ├── ttAutoIntroEdgesPipeline01.gif │ │ ├── ttAutoIntroEdgesPipeline02.gif │ │ ├── ttAutoIntroEdgesPipeline03.gif │ │ ├── ttAutoIntroEdgesPipeline04.gif │ │ ├── ttAutoIntroEdgesScale.gif │ │ ├── ttAutoIntroRegionScale.gif │ │ ├── ttAutoIntroRegionsExample.gif │ │ ├── ttAutoIntroRegionsHisto.gif │ │ ├── ttAutoIntroRegionsRemapFunction.gif │ │ ├── ttAutoIntroRegionsSegment01.gif │ │ ├── ttAutoIntroRegionsSegment02.gif │ │ ├── ttAutoIntroRegionsSegment03.gif │ │ ├── ttAutoIntroRegionsSegment04.gif │ │ ├── ttAutoIntroSnakeConcept01.gif │ │ ├── ttAutoIntroSnakeConcept02.gif │ │ ├── ttAutoIntroSnakeConcept03.gif │ │ ├── ttAutoIntroSnakeConcept04.gif │ │ ├── ttAutoIntroSnakeMerge01.gif │ │ ├── ttAutoIntroSnakeMerge02.gif │ │ ├── ttAutoIntroSnakeMerge03.gif │ │ ├── ttAutoIntroSnakeMerge04.gif │ │ ├── ttAutoIntroSnakeVelocities.gif │ │ ├── ttAutoIntroSnakeVelocitiesMotion01.gif │ │ ├── ttEdgeBubbles.gif │ │ ├── ttEdgeFeatureImage.gif │ │ ├── ttEdgeFilterBox.gif │ │ ├── ttEdgeLeaky.gif │ │ ├── ttEdgeNoLeaks.gif │ │ ├── ttEdgeParameters1.gif │ │ ├── ttEdgePipeline1.gif │ │ ├── ttIconAction.gif │ │ ├── ttIconAttention.gif │ │ ├── ttIconExpert.gif │ │ ├── ttIconTip.gif │ │ ├── ttIntroScreenLayout.gif │ │ ├── ttLoadImageBrowser.gif │ │ ├── ttLoadImageMenuBar.gif │ │ ├── ttLoadImageResult.gif │ │ ├── ttLoadImageWizardOrientation.gif │ │ ├── ttLoadImageWizardPreview.gif │ │ ├── ttLoadImageWizardPreviewWithFile.gif │ │ ├── ttLoadImageWizardSummary.gif │ │ ├── ttManualSegmentLabelEditor.gif │ │ ├── ttManualSegmentLabelEditorChanged.gif │ │ ├── ttManualSegmentLabelEditorLoaded.gif │ │ ├── ttManualSegmentLabelFileDialog.gif │ │ ├── ttManualSegmentLabelSubPanel.gif │ │ ├── ttManualSegmentLabelSubPanel02.gif │ │ ├── ttManualSegmentPaintClosePath.gif │ │ ├── ttManualSegmentPaintFill.gif │ │ ├── ttManualSegmentPaintPaste.gif │ │ ├── ttManualSegmentPaintSelectSome.gif │ │ ├── ttManualSegmentPaintStart.gif │ │ ├── ttManualSegmentResult.gif │ │ ├── ttManualSegmentRightCaudate.gif │ │ ├── ttManualSegmentSaveWizard.gif │ │ ├── ttManualSegmentSaveWizardFilled.gif │ │ ├── ttManualSegmentToolbarManual.gif │ │ ├── ttRegion3DImaginaryLine.gif │ │ ├── ttRegion3DScalpelLine.gif │ │ ├── ttRegion3DScalpelResult.gif │ │ ├── ttRegion3DTools.gif │ │ ├── ttRegionAddBubble01.gif │ │ ├── ttRegionAddBubble02.gif │ │ ├── ttRegionFunctionForVentricles.gif │ │ ├── ttRegionNewInterface.gif │ │ ├── ttRegionParameterWindow.gif │ │ ├── ttRegionPreprocessor01.gif │ │ ├── ttRegionPreprocessor02.gif │ │ ├── ttRegionROISelection01.gif │ │ ├── ttRegionROISelection02.gif │ │ ├── ttRegionROISelectionFinal.gif │ │ ├── ttRegionResult.gif │ │ ├── ttRegionScalpelLabels.gif │ │ ├── ttRegionToolbar.gif │ │ ├── ttRegionVentricleResult.gif │ │ ├── ttRegionWizard02.gif │ │ ├── ttRegionWizard03.gif │ │ ├── ttSprayPaintCross.gif │ │ ├── ttSprayPaintTool.gif │ │ ├── ttTipsAdvanced.gif │ │ ├── ttTipsFocusPlus.gif │ │ ├── ttTipsFocusResult.gif │ │ ├── ttTipsImageInfo.gif │ │ ├── ttTipsResample1.gif │ │ ├── ttTipsResample2.gif │ │ ├── ttTipsResample3.gif │ │ ├── ttViewImageAppearance.gif │ │ ├── ttViewImageControlPanel.gif │ │ ├── ttViewImageControlPanelToolOptions01.gif │ │ ├── ttViewImageControlPanelToolOptions02.gif │ │ ├── ttViewImageControlPanelToolbox01.gif │ │ ├── ttViewImageControlPanelToolbox02.gif │ │ ├── ttViewImageDisplayOptions.gif │ │ ├── ttViewImageIntensityDialog.gif │ │ ├── ttViewImageIntensityDialogWindowing.gif │ │ ├── ttViewImageIntensityDialogWindowingCurve.gif │ │ ├── ttViewImageSliceWindowClick.gif │ │ ├── ttViewImageSliceWindowZoom.gif │ │ ├── ttVolumeStatsDialog.gif │ │ └── ttVolumeStatsMesh.gif │ ├── CMakeLists.txt │ ├── ContextHelp_Freehand.html │ ├── ContextHelp_SegmentationOptions.html │ ├── Credits.html │ ├── Shortcuts.html │ ├── Tutorial.html │ ├── TutorialSectionEdgeBasedSegmentation.html │ ├── TutorialSectionIntroduction.html │ ├── TutorialSectionIntroductionToAutomatic.html │ ├── TutorialSectionLoadingImages.html │ ├── TutorialSectionManualSegmentation.html │ ├── TutorialSectionRegionSegmentation.html │ ├── TutorialSectionTipsAndTricks.html │ ├── TutorialSectionViewingImages.html │ └── TutorialSectionVolumes.html ├── Images2D │ ├── CMakeLists.txt │ ├── EdgeForcesExample.hdr │ ├── EdgeForcesExample.img.gz │ ├── EdgeForcesExample.png │ ├── RegionForcesExample.hdr │ ├── RegionForcesExample.img.gz │ └── RegionForcesExample.png ├── Presets │ ├── CMakeLists.txt │ └── SnakeParameterPreviewCurve.txt └── SNAPProgramDataDirectory.txt ├── README.git ├── README.html ├── README.md ├── ReleaseNotes.md ├── Testing ├── GUI │ └── Qt │ │ ├── SNAPTestQt.cxx │ │ ├── SNAPTestQt.h │ │ ├── SSHTunnelTest │ │ └── main.cxx │ │ ├── Scripts │ │ ├── test_4DContinuousRendering.js │ │ ├── test_4DToMC.js │ │ ├── test_DeformationGrid.js │ │ ├── test_DiffSpace.js │ │ ├── test_EchoCartesianDicomLoading.js │ │ ├── test_EdgeAttraction.js │ │ ├── test_LabelSmoothing.js │ │ ├── test_Library.js │ │ ├── test_MCTo4D.js │ │ ├── test_MeshImport.js │ │ ├── test_MeshWorkspace.js │ │ ├── test_NaNs.js │ │ ├── test_PreferencesDialog.js │ │ ├── test_ProbeIntensity.js │ │ ├── test_RandomForest.js │ │ ├── test_RandomForestBailOut.js │ │ ├── test_RegionCompetition.js │ │ ├── test_Reloading.js │ │ ├── test_SegmentationMesh.js │ │ ├── test_VolumeRendering.js │ │ └── test_Workspace.js │ │ └── TestingScripts.qrc ├── Logic │ ├── IRISApplicationTest.cxx │ ├── SlicingPerformanceTest.cxx │ ├── TestTDigest.cxx │ ├── iteratorTests.cxx │ ├── itkImageIteratorTest.cxx │ ├── itkImageIteratorWithIndexTest.cxx │ ├── itkImageIteratorsForwardBackwardTest.cxx │ ├── itkImageRegionConstIteratorWithOnlyIndexTest.cxx │ ├── itkImageRegionIteratorTest.cxx │ ├── itkImageScanlineIteratorTest1.cxx │ ├── itkIteratorTests.cxx │ ├── itkRegionOfInterestImageFilterTest.cxx │ └── testRLE.cxx └── TestData │ ├── MRIcrop-orig.gipl.gz │ ├── MRIcrop-seg.gipl.gz │ ├── MRIcrop-seg.label │ ├── MRIcrop-ventricle-mesh.vtk │ ├── MRIcrop-with-mesh.itksnap │ ├── X300.mha │ ├── X39.nii.gz │ ├── Y300.mha │ ├── Y55.nii.gz │ ├── Z150.mha │ ├── Z32.nii.gz │ ├── diffspace.itksnap │ ├── echo_cartesian_dummy.dcm │ ├── echo_cartesian_loading.itksnap │ ├── external_mesh_f1.vtp │ ├── external_mesh_f2.vtp │ ├── external_mesh_f3.vtp │ ├── fixed_image.nii.gz │ ├── img4d_11f.itksnap │ ├── img4d_11f.nii.gz │ ├── img4d_11f_volren.itksnap │ ├── mesh_workspace.itksnap │ ├── moving_image.nii.gz │ ├── multi_chunk.nii.gz │ ├── nan.mha │ ├── nan_seg.mha │ ├── reslice_image.nii.gz │ ├── seg4d_11f.nii.gz │ ├── seg4d_11f_label1.nii.gz │ ├── seg4d_11f_label2.nii.gz │ ├── segmentation_mesh.itksnap │ ├── t1_chunk.nii.gz │ ├── t2_chunk.nii.gz │ ├── tdigest_test.nii.gz │ ├── tensor.itksnap │ ├── tensor_fa.nii.gz │ ├── tensor_rgb.nii.gz │ ├── tensor_t1.nii.gz │ ├── tensor_tr.nii.gz │ ├── ultrasound_img4d.nii.gz │ ├── ultrasound_seg4d.nii.gz │ ├── ultrasound_ws4d.itksnap │ ├── vb-seg.mha │ ├── warp_image.nii.gz │ └── warpfield.itksnap └── Utilities ├── Docker ├── itksnap-base │ └── Dockerfile └── itksnap │ └── Dockerfile ├── Forwarding ├── CMakeLists.txt ├── SharedForward.h.in └── SharedForwardExe.c.in ├── InnoSetup ├── InstallSNAP.iss.in └── itksnap.ico ├── Linux └── getsnap.sh ├── MacOS ├── BundleResources │ ├── Info.plist │ ├── README.txt │ ├── background.key │ ├── background.tiff │ ├── dsstore.bin │ ├── entitlements.plist │ ├── execaller.sh │ ├── install_cmdl.sh │ ├── itksnap.icns │ └── make_dsstore.scpt ├── apple_developer_for_github.p12 ├── notarize_and_staple.cmake └── unlock_keychain.cmake ├── Translation └── translate_itksnap.ipynb ├── Win32 ├── itksnap.rc └── snaplogo.ico ├── Workspace ├── CMakeLists.txt └── WorkspaceTool.cxx ├── licensetemplate.txt └── package_info.json /.clang-format: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/pyushkevich/itksnap/HEAD/.clang-format -------------------------------------------------------------------------------- /.dockerignore: -------------------------------------------------------------------------------- 1 | #.git 2 | -------------------------------------------------------------------------------- /.github/workflows/build.yml: 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