├── README.md ├── Tutorial.md ├── Tutorial.pdf ├── extdata ├── Homo_sapiens_TF.txt └── annotations.rds └── images ├── coverage_gene_markers.png ├── coverage_peak_markers.png ├── elbowplot_depthcor.png ├── enriched_motifs.png ├── grn_df.png ├── top_markers_genes.png ├── top_markers_peaks.png ├── umap_atac.png ├── umap_atac_geneact.png ├── umap_atac_integrated.png ├── umap_bimodal.png ├── umap_bimodal_ct.png ├── umap_chromvar.png ├── umap_chromvar_tfs.png ├── umap_enriched_motifs_tf.png ├── umap_pando_regulon.png ├── umap_rna.png ├── umap_rna_css.png ├── umap_rna_css_clusters.png └── vlnplot_QC.png /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/quadbio/scMultiome_analysis_vignette/HEAD/README.md -------------------------------------------------------------------------------- /Tutorial.md: -------------------------------------------------------------------------------- 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