├── images └── la-palma-map.png ├── _extensions └── quarto-journals │ └── agu │ ├── partials │ ├── _corresponding-author.tex │ ├── _authors.tex │ ├── _affiliations.tex │ ├── before-body.tex │ └── title.tex │ ├── agu.lua │ ├── _extension.yml │ └── american-geophysical-union.csl ├── site_libs ├── bootstrap │ └── bootstrap-icons.woff ├── quarto-contrib │ └── glightbox │ │ ├── lightbox.css │ │ └── glightbox.min.css ├── quarto-html │ ├── tippy.css │ ├── quarto-syntax-highlighting.css │ ├── anchor.min.js │ ├── popper.min.js │ └── tippy.umd.min.js ├── manuscript-notebook │ └── headroom.min.js └── clipboard │ └── clipboard.min.js ├── _freeze ├── index │ ├── figure-docx │ │ ├── fig-timeline-1.png │ │ └── notebooks-explore-earthquakes-fig-spatial-plot-output-1.png │ ├── figure-html │ │ ├── fig-timeline-1.png │ │ └── notebooks-explore-earthquakes-fig-spatial-plot-output-1.png │ ├── figure-jats │ │ ├── fig-timeline-1.png │ │ └── notebooks-explore-earthquakes-fig-spatial-plot-output-1.png │ ├── figure-pdf │ │ └── fig-timeline-1.pdf │ ├── figure-ipynb │ │ └── notebooks-explore-earthquakes-fig-spatial-plot-output-1.png │ └── execute-results │ │ ├── html.json │ │ ├── xml.json │ │ ├── docx.json │ │ └── tex.json ├── site_libs │ ├── bootstrap │ │ └── bootstrap-icons.woff │ ├── quarto-contrib │ │ └── glightbox │ │ │ ├── lightbox.css │ │ │ └── glightbox.min.css │ ├── quarto-html │ │ ├── tippy.css │ │ ├── quarto-syntax-highlighting.css │ │ ├── anchor.min.js │ │ ├── popper.min.js │ │ └── tippy.umd.min.js │ ├── manuscript-notebook │ │ └── headroom.min.js │ └── clipboard │ │ └── clipboard.min.js └── notebooks │ └── explore-earthquakes │ ├── figure-html │ └── fig-spatial-plot-1.png │ ├── figure-jats │ └── fig-spatial-plot-1.png │ └── execute-results │ ├── html.json │ └── xml.json ├── .gitignore ├── README.md ├── _quarto.yml ├── manuscript-template-rstudio.Rproj ├── references.bib ├── .github └── workflows │ └── publish.yml ├── notebooks └── explore-earthquakes.qmd └── index.qmd 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*/.ipynb_checkpoints/* 3 | 4 | /.quarto/ 5 | /_manuscript 6 | 7 | /agujournal2019.cls 8 | /trackchanges.sty 9 | .Rproj.user 10 | .Rhistory 11 | .Rdata 12 | .httr-oauth 13 | .DS_Store 14 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | ## A Quarto Manuscript Template 2 | 3 | This is a template repo for generating a manuscript from Quarto that accompanies the tutorial at: [Quarto Manuscripts: RStudio](https://quarto.org/docs/manuscripts/authoring/rstudio.html) 4 | 5 | -------------------------------------------------------------------------------- /_freeze/index/figure-docx/notebooks-explore-earthquakes-fig-spatial-plot-output-1.png: -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- 1 | project: 2 | type: manuscript 3 | 4 | execute: 5 | freeze: auto 6 | 7 | format: 8 | html: 9 | toc: true 10 | comments: 11 | hypothesis: true 12 | docx: default 13 | jats: default 14 | agu-pdf: default 15 | 16 | 17 | 18 | -------------------------------------------------------------------------------- /manuscript-template-rstudio.Rproj: -------------------------------------------------------------------------------- 1 | Version: 1.0 2 | 3 | RestoreWorkspace: Default 4 | SaveWorkspace: Default 5 | AlwaysSaveHistory: Default 6 | 7 | EnableCodeIndexing: Yes 8 | UseSpacesForTab: Yes 9 | NumSpacesForTab: 2 10 | Encoding: UTF-8 11 | 12 | RnwWeave: knitr 13 | LaTeX: pdfLaTeX 14 | -------------------------------------------------------------------------------- /_extensions/quarto-journals/agu/agu.lua: -------------------------------------------------------------------------------- 1 | 2 | 3 | if quarto.doc.is_format("pdf") then 4 | return { 5 | { 6 | Div = function(div) 7 | if div.identifier == 'refs' then 8 | div.content:insert(pandoc.RawBlock('latex', '\\vspace{1em}')) 9 | return div 10 | end 11 | end 12 | } 13 | } 14 | end -------------------------------------------------------------------------------- /references.bib: -------------------------------------------------------------------------------- 1 | @article{marrero2019, 2 | author = {Marrero, Jos{\' e} and Garc{\' i}a, Alicia and Berrocoso, Manuel and Llinares, {\' A}ngeles and Rodr{\' i}guez-Losada, Antonio and Ortiz, R.}, 3 | journal = {Journal of Applied Volcanology}, 4 | year = {2019}, 5 | month = {7}, 6 | pages = {}, 7 | title = {Strategies for the development of volcanic hazard maps in monogenetic volcanic fields: the example of {La} {Palma} ({Canary} {Islands})}, 8 | volume = {8}, 9 | doi = {10.1186/s13617-019-0085-5}, 10 | } 11 | -------------------------------------------------------------------------------- /_extensions/quarto-journals/agu/partials/before-body.tex: -------------------------------------------------------------------------------- 1 | $if(title)$ 2 | \title{$title$} 3 | $endif$ 4 | 5 | \authors{${ by-author:_authors.tex()[, ] }} 6 | $by-affiliation:_affiliations.tex()$ 7 | $by-author:_corresponding-author.tex()$ 8 | 9 | $if(keypoints)$ 10 | \begin{keypoints} 11 | $for(keypoints)$\item $keypoints$ $endfor$ 12 | \end{keypoints} 13 | $endif$ 14 | 15 | $if(abstract)$ 16 | \begin{abstract} 17 | $abstract$ 18 | \end{abstract} 19 | $endif$ 20 | 21 | $if(plain-language-summary)$ 22 | \section*{Plain Language Summary} 23 | $plain-language-summary$ 24 | $endif$ 25 | 26 | 27 | 28 | -------------------------------------------------------------------------------- /site_libs/quarto-contrib/glightbox/lightbox.css: -------------------------------------------------------------------------------- 1 | body:not(.glightbox-mobile) div.gslide div.gslide-description, 2 | body:not(.glightbox-mobile) div.gslide-description .gslide-title, 3 | body:not(.glightbox-mobile) div.gslide-description .gslide-desc { 4 | color: var(--quarto-body-color); 5 | background-color: var(--quarto-body-bg); 6 | } 7 | 8 | .goverlay { 9 | background: rgba(0, 0, 0, 0.7); 10 | } 11 | 12 | div.gslide-description .gslide-title { 13 | margin-top: 0.25em; 14 | margin-bottom: 0.25em; 15 | font-weight: 500; 16 | font-family: inherit; 17 | } 18 | 19 | div.gslide-description .gslide-desc { 20 | padding-bottom: 0.5em; 21 | font-family: inherit; 22 | } 23 | -------------------------------------------------------------------------------- /_freeze/site_libs/quarto-contrib/glightbox/lightbox.css: -------------------------------------------------------------------------------- 1 | body:not(.glightbox-mobile) div.gslide div.gslide-description, 2 | body:not(.glightbox-mobile) div.gslide-description .gslide-title, 3 | body:not(.glightbox-mobile) div.gslide-description .gslide-desc { 4 | color: var(--quarto-body-color); 5 | background-color: var(--quarto-body-bg); 6 | } 7 | 8 | .goverlay { 9 | background: rgba(0, 0, 0, 0.7); 10 | } 11 | 12 | div.gslide-description .gslide-title { 13 | margin-top: 0.25em; 14 | margin-bottom: 0.25em; 15 | font-weight: 500; 16 | font-family: inherit; 17 | } 18 | 19 | div.gslide-description .gslide-desc { 20 | padding-bottom: 0.5em; 21 | font-family: inherit; 22 | } 23 | -------------------------------------------------------------------------------- /.github/workflows/publish.yml: -------------------------------------------------------------------------------- 1 | on: 2 | workflow_dispatch: 3 | push: 4 | branches: main 5 | 6 | name: Quarto Publish 7 | 8 | jobs: 9 | build-deploy: 10 | runs-on: ubuntu-latest 11 | permissions: 12 | contents: write 13 | steps: 14 | - name: Check out repository 15 | uses: actions/checkout@v4 16 | 17 | - name: Set up Quarto 18 | uses: quarto-dev/quarto-actions/setup@v2 19 | with: 20 | version: pre-release 21 | tinytex: true 22 | 23 | 24 | - name: Render and Publish 25 | uses: quarto-dev/quarto-actions/publish@v2 26 | with: 27 | target: gh-pages 28 | env: 29 | GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} 30 | -------------------------------------------------------------------------------- /notebooks/explore-earthquakes.qmd: -------------------------------------------------------------------------------- 1 | --- 2 | title: Explore Earthquakes 3 | author: Charlotte Wickham 4 | --- 5 | 6 | ```{r} 7 | library(tidyverse) 8 | ``` 9 | 10 | 11 | Read a clean version of data: 12 | 13 | ```{r} 14 | la_palma <- read_csv("la-palma.csv") 15 | ``` 16 | 17 | Create spatial plot: 18 | 19 | ```{r} 20 | #| label: fig-spatial-plot 21 | #| fig-cap: "Locations of earthquakes on La Palma since 2017" 22 | #| fig-alt: "A scatterplot of earthquake locations plotting latitude 23 | #| against longitude." 24 | la_palma |> 25 | ggplot(aes(Longitude, Latitude)) + 26 | geom_point(aes(color = Magnitude, size = 40-`Depth(km)`)) + 27 | scale_color_viridis_c(direction = -1) + 28 | scale_size(range = c(0.5, 2), guide = "none") + 29 | theme_bw() 30 | ``` 31 | 32 | -------------------------------------------------------------------------------- /_extensions/quarto-journals/agu/partials/title.tex: -------------------------------------------------------------------------------- 1 | $--% JGR: Atmospheres 2 | $--% JGR: Biogeosciences 3 | $--% JGR: Earth Surface 4 | $--% JGR: Oceans 5 | $--% JGR: Planets 6 | $--% JGR: Solid Earth 7 | $--% JGR: Space Physics 8 | $--% Global Biogeochemical Cycles 9 | $--% Geophysical Research Letters 10 | $--% Paleoceanography and Paleoclimatology 11 | $--% Radio Science 12 | $--% Reviews of Geophysics 13 | $--% Tectonics 14 | $--% Space Weather 15 | $--% Water Resources Research 16 | $--% Geochemistry, Geophysics, Geosystems 17 | $--% Journal of Advances in Modeling Earth Systems (JAMES) 18 | $--% Earth's Future 19 | $--% Earth and Space Science 20 | $--% Geohealth 21 | $if(citation.container-title)$ 22 | \journalname{$citation.container-title$} 23 | $endif$ 24 | 25 | $if(draft)$ 26 | $else$ 27 | \draftfalse 28 | $endif$ -------------------------------------------------------------------------------- /_extensions/quarto-journals/agu/_extension.yml: -------------------------------------------------------------------------------- 1 | title: AGU Journals Template 2 | author: Charles Teague 3 | version: 0.1.0 4 | contributes: 5 | formats: 6 | common: 7 | knitr: 8 | opts_chunk: 9 | echo: false 10 | number-sections: true 11 | csl: american-geophysical-union.csl 12 | filters: 13 | - agu.lua 14 | pdf: 15 | documentclass: agujournal2019 16 | classoptions: draft 17 | header-includes: | 18 | \usepackage{url} %this package should fix any errors with URLs in refs. 19 | \usepackage{lineno} 20 | \usepackage[inline]{trackchanges} %for better track changes. finalnew option will compile document with changes incorporated. 21 | \usepackage{soul} 22 | \linenumbers 23 | template-partials: 24 | - "partials/title.tex" 25 | - "partials/_authors.tex" 26 | - "partials/before-body.tex" 27 | - "partials/_affiliations.tex" 28 | - "partials/_corresponding-author.tex" 29 | format-resources: 30 | - agujournal2019.cls 31 | - trackchanges.sty 32 | html: 33 | toc: true 34 | -------------------------------------------------------------------------------- /site_libs/quarto-html/tippy.css: -------------------------------------------------------------------------------- 1 | .tippy-box[data-animation=fade][data-state=hidden]{opacity:0}[data-tippy-root]{max-width:calc(100vw - 10px)}.tippy-box{position:relative;background-color:#333;color:#fff;border-radius:4px;font-size:14px;line-height:1.4;white-space:normal;outline:0;transition-property:transform,visibility,opacity}.tippy-box[data-placement^=top]>.tippy-arrow{bottom:0}.tippy-box[data-placement^=top]>.tippy-arrow:before{bottom:-7px;left:0;border-width:8px 8px 0;border-top-color:initial;transform-origin:center top}.tippy-box[data-placement^=bottom]>.tippy-arrow{top:0}.tippy-box[data-placement^=bottom]>.tippy-arrow:before{top:-7px;left:0;border-width:0 8px 8px;border-bottom-color:initial;transform-origin:center bottom}.tippy-box[data-placement^=left]>.tippy-arrow{right:0}.tippy-box[data-placement^=left]>.tippy-arrow:before{border-width:8px 0 8px 8px;border-left-color:initial;right:-7px;transform-origin:center left}.tippy-box[data-placement^=right]>.tippy-arrow{left:0}.tippy-box[data-placement^=right]>.tippy-arrow:before{left:-7px;border-width:8px 8px 8px 0;border-right-color:initial;transform-origin:center right}.tippy-box[data-inertia][data-state=visible]{transition-timing-function:cubic-bezier(.54,1.5,.38,1.11)}.tippy-arrow{width:16px;height:16px;color:#333}.tippy-arrow:before{content:"";position:absolute;border-color:transparent;border-style:solid}.tippy-content{position:relative;padding:5px 9px;z-index:1} -------------------------------------------------------------------------------- /_freeze/site_libs/quarto-html/tippy.css: -------------------------------------------------------------------------------- 1 | .tippy-box[data-animation=fade][data-state=hidden]{opacity:0}[data-tippy-root]{max-width:calc(100vw - 10px)}.tippy-box{position:relative;background-color:#333;color:#fff;border-radius:4px;font-size:14px;line-height:1.4;white-space:normal;outline:0;transition-property:transform,visibility,opacity}.tippy-box[data-placement^=top]>.tippy-arrow{bottom:0}.tippy-box[data-placement^=top]>.tippy-arrow:before{bottom:-7px;left:0;border-width:8px 8px 0;border-top-color:initial;transform-origin:center top}.tippy-box[data-placement^=bottom]>.tippy-arrow{top:0}.tippy-box[data-placement^=bottom]>.tippy-arrow:before{top:-7px;left:0;border-width:0 8px 8px;border-bottom-color:initial;transform-origin:center bottom}.tippy-box[data-placement^=left]>.tippy-arrow{right:0}.tippy-box[data-placement^=left]>.tippy-arrow:before{border-width:8px 0 8px 8px;border-left-color:initial;right:-7px;transform-origin:center left}.tippy-box[data-placement^=right]>.tippy-arrow{left:0}.tippy-box[data-placement^=right]>.tippy-arrow:before{left:-7px;border-width:8px 8px 8px 0;border-right-color:initial;transform-origin:center right}.tippy-box[data-inertia][data-state=visible]{transition-timing-function:cubic-bezier(.54,1.5,.38,1.11)}.tippy-arrow{width:16px;height:16px;color:#333}.tippy-arrow:before{content:"";position:absolute;border-color:transparent;border-style:solid}.tippy-content{position:relative;padding:5px 9px;z-index:1} -------------------------------------------------------------------------------- /_freeze/notebooks/explore-earthquakes/execute-results/html.json: -------------------------------------------------------------------------------- 1 | { 2 | "hash": "bf2dd7dd143e10c09c8bbd562f84cac2", 3 | "result": { 4 | "engine": "knitr", 5 | "markdown": "---\ntitle: Explore Earthquakes\nauthor: Charlotte Wickham\n---\n\n::: {.cell}\n\n```{.r .cell-code .hidden}\nlibrary(tidyverse)\n```\n\n::: {.cell-output .cell-output-stderr .hidden}\n\n```\n── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ──\n✔ dplyr 1.1.4 ✔ readr 2.1.5\n✔ forcats 1.0.0 ✔ stringr 1.5.1\n✔ ggplot2 3.5.0 ✔ tibble 3.2.1\n✔ lubridate 1.9.3 ✔ tidyr 1.3.1\n✔ purrr 1.0.2 \n── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──\n✖ dplyr::filter() masks stats::filter()\n✖ dplyr::lag() masks stats::lag()\nℹ Use the conflicted package () to force all conflicts to become errors\n```\n\n\n:::\n:::\n\n\n\n\n\n\n\nRead a clean version of data:\n\n\n\n\n\n\n::: {.cell}\n\n```{.r .cell-code .hidden}\nla_palma <- read_csv(\"la-palma.csv\")\n```\n\n::: {.cell-output .cell-output-stderr .hidden}\n\n```\nRows: 11347 Columns: 5\n── Column specification ────────────────────────────────────────────────────────\nDelimiter: \",\"\ndbl (4): Longitude, Latitude, Depth(km), Magnitude\ndttm (1): DateTime\n\nℹ Use `spec()` to retrieve the full column specification for this data.\nℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.\n```\n\n\n:::\n:::\n\n\n\n\n\n\nCreate spatial plot:\n\n\n\n\n\n\n::: {#cell-fig-spatial-plot .cell}\n\n```{.r .cell-code .hidden}\n#| label: fig-spatial-plot\n#| fig-cap: \"Locations of earthquakes on La Palma since 2017\"\n#| fig-alt: \"A scatterplot of earthquake locations plotting latitude\n#| against longitude.\"\nla_palma |> \n ggplot(aes(Longitude, Latitude)) +\n geom_point(aes(color = Magnitude, size = 40-`Depth(km)`)) +\n scale_color_viridis_c(direction = -1) + \n scale_size(range = c(0.5, 2), guide = \"none\") +\n theme_bw()\n```\n\n::: {.cell-output-display}\n![Locations of earthquakes on La Palma since 2017](explore-earthquakes_files/figure-html/fig-spatial-plot-1.png){#fig-spatial-plot fig-alt='A scatterplot of earthquake locations plotting latitude against longitude.' width=672}\n:::\n:::\n", 6 | "supporting": [ 7 | "explore-earthquakes_files" 8 | ], 9 | "filters": [ 10 | "rmarkdown/pagebreak.lua" 11 | ], 12 | "includes": {}, 13 | "engineDependencies": {}, 14 | "preserve": {}, 15 | "postProcess": true 16 | } 17 | } -------------------------------------------------------------------------------- /_freeze/notebooks/explore-earthquakes/execute-results/xml.json: -------------------------------------------------------------------------------- 1 | { 2 | "hash": "bf2dd7dd143e10c09c8bbd562f84cac2", 3 | "result": { 4 | "engine": "knitr", 5 | "markdown": "---\ntitle: Explore Earthquakes\nauthor: Charlotte Wickham\n---\n\n::: {.cell}\n\n```{.r .cell-code .hidden}\nlibrary(tidyverse)\n```\n\n::: {.cell-output .cell-output-stderr .hidden}\n\n```\n── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ──\n✔ dplyr 1.1.4 ✔ readr 2.1.5\n✔ forcats 1.0.0 ✔ stringr 1.5.1\n✔ ggplot2 3.5.0 ✔ tibble 3.2.1\n✔ lubridate 1.9.3 ✔ tidyr 1.3.1\n✔ purrr 1.0.2 \n── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──\n✖ dplyr::filter() masks stats::filter()\n✖ dplyr::lag() masks stats::lag()\nℹ Use the conflicted package () to force all conflicts to become errors\n```\n\n\n:::\n:::\n\n\n\n\n\n\n\n\n\n\n\nRead a clean version of data:\n\n\n\n\n\n\n\n\n\n\n::: {.cell}\n\n```{.r .cell-code .hidden}\nla_palma <- read_csv(\"la-palma.csv\")\n```\n\n::: {.cell-output .cell-output-stderr .hidden}\n\n```\nRows: 11347 Columns: 5\n── Column specification ────────────────────────────────────────────────────────\nDelimiter: \",\"\ndbl (4): Longitude, Latitude, Depth(km), Magnitude\ndttm (1): DateTime\n\nℹ Use `spec()` to retrieve the full column specification for this data.\nℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.\n```\n\n\n:::\n:::\n\n\n\n\n\n\n\n\n\n\nCreate spatial plot:\n\n\n\n\n\n\n\n\n\n\n::: {#cell-fig-spatial-plot .cell}\n\n```{.r .cell-code .hidden}\n#| label: fig-spatial-plot\n#| fig-cap: \"Locations of earthquakes on La Palma since 2017\"\n#| fig-alt: \"A scatterplot of earthquake locations plotting latitude\n#| against longitude.\"\nla_palma |> \n ggplot(aes(Longitude, Latitude)) +\n geom_point(aes(color = Magnitude, size = 40-`Depth(km)`)) +\n scale_color_viridis_c(direction = -1) + \n scale_size(range = c(0.5, 2), guide = \"none\") +\n theme_bw()\n```\n\n::: {.cell-output-display}\n![Locations of earthquakes on La Palma since 2017](explore-earthquakes_files/figure-jats/fig-spatial-plot-1.png){#fig-spatial-plot fig-alt='A scatterplot of earthquake locations plotting latitude against longitude.'}\n:::\n:::\n", 6 | "supporting": [ 7 | "explore-earthquakes_files/figure-jats" 8 | ], 9 | "filters": [ 10 | "rmarkdown/pagebreak.lua" 11 | ], 12 | "includes": {}, 13 | "engineDependencies": {}, 14 | "preserve": null, 15 | "postProcess": false 16 | } 17 | } -------------------------------------------------------------------------------- /index.qmd: -------------------------------------------------------------------------------- 1 | --- 2 | title: La Palma Earthquakes 3 | author: 4 | - name: Steve Purves 5 | orcid: 0000-0002-0760-5497 6 | corresponding: true 7 | email: steve@curvenote.com 8 | roles: 9 | - Investigation 10 | - Project administration 11 | - Software 12 | - Visualization 13 | affiliations: 14 | - Curvenote 15 | - name: Rowan Cockett 16 | orcid: 0000-0002-7859-8394 17 | corresponding: false 18 | roles: [] 19 | affiliations: 20 | - Curvenote 21 | keywords: 22 | - La Palma 23 | - Earthquakes 24 | abstract: | 25 | In September 2021, a significant jump in seismic activity on the island of La Palma (Canary Islands, Spain) signaled the start of a volcanic crisis that still continues at the time of writing. Earthquake data is continually collected and published by the Instituto Geográphico Nacional (IGN). ... 26 | plain-language-summary: | 27 | Earthquake data for the island of La Palma from the September 2021 eruption is found ... 28 | key-points: 29 | - A web scraping script was developed to pull data from the Instituto Geogràphico Nacional into a machine-readable form for analysis 30 | - Earthquake events on La Palma are consistent with the presence of both mantle and crustal reservoirs. 31 | date: last-modified 32 | bibliography: references.bib 33 | citation: 34 | container-title: Earth and Space Science 35 | number-sections: true 36 | --- 37 | 38 | ## Introduction 39 | 40 | ```{r} 41 | eruptions <- c(1492, 1585, 1646, 1677, 1712, 1949, 1971, 2021) 42 | n_eruptions <- length(eruptions) 43 | ``` 44 | 45 | ```{r} 46 | #| label: fig-timeline 47 | #| fig-cap: Timeline of recent earthquakes on La Palma 48 | #| fig-alt: An event plot of the years of the last 8 eruptions on La Palma. 49 | #| fig-height: 1.5 50 | #| fig-width: 6 51 | par(mar = c(3, 1, 1, 1) + 0.1) 52 | plot(eruptions, rep(0, n_eruptions), 53 | pch = "|", axes = FALSE) 54 | axis(1) 55 | box() 56 | ``` 57 | 58 | ```{r} 59 | #| output: false 60 | avg_years_between_eruptions <- mean(diff(eruptions[-n_eruptions])) 61 | avg_years_between_eruptions 62 | ``` 63 | 64 | Based on data up to and including 1971, eruptions on La Palma happen every `{r} round(avg_years_between_eruptions, 1)` years on average. 65 | 66 | Studies of the magma systems feeding the volcano, such as @marrero2019, have proposed that there are two main magma reservoirs feeding the Cumbre Vieja volcano; one in the mantle (30-40km depth) which charges and in turn feeds a shallower crustal reservoir (10-20km depth). 67 | 68 | Eight eruptions have been recorded since the late 1400s (@fig-timeline). 69 | 70 | Data and methods are discussed in @sec-data-methods. 71 | 72 | Let $x$ denote the number of eruptions in a year. Then, $x$ can be modeled by a Poisson distribution 73 | 74 | $$ 75 | p(x) = \frac{e^{-\lambda} \lambda^{x}}{x !} 76 | $$ {#eq-poisson} 77 | 78 | where $\lambda$ is the rate of eruptions per year. Using @eq-poisson, the probability of an eruption in the next $t$ years can be calculated. 79 | 80 | | Name | Year | 81 | | -------------------- | ------ | 82 | | Current | 2021 | 83 | | Teneguía | 1971 | 84 | | Nambroque | 1949 | 85 | | El Charco | 1712 | 86 | | Volcán San Antonio | 1677 | 87 | | Volcán San Martin | 1646 | 88 | | Tajuya near El Paso | 1585 | 89 | | Montaña Quemada | 1492 | 90 | 91 | : Recent historic eruptions on La Palma {#tbl-history} 92 | 93 | @tbl-history summarises the eruptions recorded since the colonization of the islands by Europeans in the late 1400s. 94 | 95 | ![Map of La Palma](images/la-palma-map.png){#fig-map} 96 | 97 | La Palma is one of the west most islands in the Volcanic Archipelago of the Canary Islands (@fig-map). 98 | 99 | {{< embed notebooks/explore-earthquakes.qmd#fig-spatial-plot >}} 100 | 101 | @fig-spatial-plot shows the location of recent Earthquakes on La Palma. 102 | 103 | ## Data & Methods {#sec-data-methods} 104 | 105 | ## Conclusion 106 | 107 | ## References {.unnumbered} 108 | 109 | :::{#refs} 110 | 111 | ::: -------------------------------------------------------------------------------- /_freeze/index/execute-results/html.json: -------------------------------------------------------------------------------- 1 | { 2 | "hash": "12f412c1727b545eefadd0ae0deef926", 3 | "result": { 4 | "engine": "knitr", 5 | "markdown": "---\ntitle: La Palma Earthquakes\nauthor:\n - name: Steve Purves\n orcid: 0000-0002-0760-5497\n corresponding: true\n email: steve@curvenote.com\n roles:\n - Investigation\n - Project administration\n - Software\n - Visualization\n affiliations:\n - Curvenote\n - name: Rowan Cockett\n orcid: 0000-0002-7859-8394\n corresponding: false\n roles: []\n affiliations:\n - Curvenote\nkeywords:\n - La Palma\n - Earthquakes\nabstract: |\n In September 2021, a significant jump in seismic activity on the island of La Palma (Canary Islands, Spain) signaled the start of a volcanic crisis that still continues at the time of writing. Earthquake data is continually collected and published by the Instituto Geográphico Nacional (IGN). ...\nplain-language-summary: |\n Earthquake data for the island of La Palma from the September 2021 eruption is found ...\nkey-points:\n - A web scraping script was developed to pull data from the Instituto Geogràphico Nacional into a machine-readable form for analysis\n - Earthquake events on La Palma are consistent with the presence of both mantle and crustal reservoirs.\ndate: last-modified\nbibliography: references.bib\ncitation:\n container-title: Earth and Space Science\nnumber-sections: true\n---\n\n\n\n\n\n\n## Introduction\n\n\n\n\n\n\n::: {.cell}\n\n```{.r .cell-code .hidden}\neruptions <- c(1492, 1585, 1646, 1677, 1712, 1949, 1971, 2021)\nn_eruptions <- length(eruptions)\n```\n:::\n\n::: {#cell-fig-timeline .cell}\n\n```{.r .cell-code .hidden}\npar(mar = c(3, 1, 1, 1) + 0.1)\nplot(eruptions, rep(0, n_eruptions), \n pch = \"|\", axes = FALSE)\naxis(1)\nbox()\n```\n\n::: {.cell-output-display}\n![Timeline of recent earthquakes on La Palma](index_files/figure-html/fig-timeline-1.png){#fig-timeline fig-alt='An event plot of the years of the last 8 eruptions on La Palma.' width=576}\n:::\n:::\n\n::: {.cell}\n\n```{.r .cell-code .hidden}\navg_years_between_eruptions <- mean(diff(eruptions[-n_eruptions]))\navg_years_between_eruptions\n```\n\n::: {.cell-output .cell-output-stdout .hidden}\n\n```\n[1] 79.83333\n```\n\n\n:::\n:::\n\n\n\n\n\n\nBased on data up to and including 1971, eruptions on La Palma happen every 79.8 years on average.\n\nStudies of the magma systems feeding the volcano, such as @marrero2019, have proposed that there are two main magma reservoirs feeding the Cumbre Vieja volcano; one in the mantle (30-40km depth) which charges and in turn feeds a shallower crustal reservoir (10-20km depth).\n\nEight eruptions have been recorded since the late 1400s (@fig-timeline).\n\nData and methods are discussed in @sec-data-methods.\n\nLet $x$ denote the number of eruptions in a year. Then, $x$ can be modeled by a Poisson distribution\n\n$$\np(x) = \\frac{e^{-\\lambda} \\lambda^{x}}{x !}\n$$ {#eq-poisson}\n\nwhere $\\lambda$ is the rate of eruptions per year. Using @eq-poisson, the probability of an eruption in the next $t$ years can be calculated.\n\n| Name | Year |\n| -------------------- | ------ |\n| Current | 2021 |\n| Teneguía | 1971 |\n| Nambroque | 1949 |\n| El Charco | 1712 |\n| Volcán San Antonio | 1677 |\n| Volcán San Martin | 1646 |\n| Tajuya near El Paso | 1585 |\n| Montaña Quemada | 1492 |\n\n: Recent historic eruptions on La Palma {#tbl-history}\n\n@tbl-history summarises the eruptions recorded since the colonization of the islands by Europeans in the late 1400s.\n\n![Map of La Palma](images/la-palma-map.png){#fig-map}\n\nLa Palma is one of the west most islands in the Volcanic Archipelago of the Canary Islands (@fig-map). \n\n\n\n\n\n\n{{< embed notebooks/explore-earthquakes.qmd#fig-spatial-plot >}}\n\n\n\n\n\n\n\n\n\n\n@fig-spatial-plot shows the location of recent Earthquakes on La Palma.\n\n## Data & Methods {#sec-data-methods}\n\n## Conclusion\n\n## References {.unnumbered}\n\n:::{#refs}\n\n:::", 6 | "supporting": [ 7 | "index_files" 8 | ], 9 | "filters": [ 10 | "rmarkdown/pagebreak.lua" 11 | ], 12 | "includes": {}, 13 | "engineDependencies": {}, 14 | "preserve": {}, 15 | "postProcess": true 16 | } 17 | } -------------------------------------------------------------------------------- /_freeze/index/execute-results/xml.json: -------------------------------------------------------------------------------- 1 | { 2 | "hash": "12f412c1727b545eefadd0ae0deef926", 3 | "result": { 4 | "engine": "knitr", 5 | "markdown": "---\ntitle: La Palma Earthquakes\nauthor:\n - name: Steve Purves\n orcid: 0000-0002-0760-5497\n corresponding: true\n email: steve@curvenote.com\n roles:\n - Investigation\n - Project administration\n - Software\n - Visualization\n affiliations:\n - Curvenote\n - name: Rowan Cockett\n orcid: 0000-0002-7859-8394\n corresponding: false\n roles: []\n affiliations:\n - Curvenote\nkeywords:\n - La Palma\n - Earthquakes\nabstract: |\n In September 2021, a significant jump in seismic activity on the island of La Palma (Canary Islands, Spain) signaled the start of a volcanic crisis that still continues at the time of writing. Earthquake data is continually collected and published by the Instituto Geográphico Nacional (IGN). ...\nplain-language-summary: |\n Earthquake data for the island of La Palma from the September 2021 eruption is found ...\nkey-points:\n - A web scraping script was developed to pull data from the Instituto Geogràphico Nacional into a machine-readable form for analysis\n - Earthquake events on La Palma are consistent with the presence of both mantle and crustal reservoirs.\ndate: last-modified\nbibliography: references.bib\ncitation:\n container-title: Earth and Space Science\nnumber-sections: true\n---\n\n\n\n\n\n\n## Introduction\n\n\n\n\n\n\n::: {.cell}\n\n```{.r .cell-code .hidden}\neruptions <- c(1492, 1585, 1646, 1677, 1712, 1949, 1971, 2021)\nn_eruptions <- length(eruptions)\n```\n:::\n\n::: {#cell-fig-timeline .cell}\n\n```{.r .cell-code .hidden}\npar(mar = c(3, 1, 1, 1) + 0.1)\nplot(eruptions, rep(0, n_eruptions), \n pch = \"|\", axes = FALSE)\naxis(1)\nbox()\n```\n\n::: {.cell-output-display}\n![Timeline of recent earthquakes on La Palma](index_files/figure-jats/fig-timeline-1.png){#fig-timeline fig-alt='An event plot of the years of the last 8 eruptions on La Palma.'}\n:::\n:::\n\n::: {.cell}\n\n```{.r .cell-code .hidden}\navg_years_between_eruptions <- mean(diff(eruptions[-n_eruptions]))\navg_years_between_eruptions\n```\n\n::: {.cell-output .cell-output-stdout .hidden}\n\n```\n[1] 79.83333\n```\n\n\n:::\n:::\n\n\n\n\n\n\nBased on data up to and including 1971, eruptions on La Palma happen every 79.8 years on average.\n\nStudies of the magma systems feeding the volcano, such as @marrero2019, have proposed that there are two main magma reservoirs feeding the Cumbre Vieja volcano; one in the mantle (30-40km depth) which charges and in turn feeds a shallower crustal reservoir (10-20km depth).\n\nEight eruptions have been recorded since the late 1400s (@fig-timeline).\n\nData and methods are discussed in @sec-data-methods.\n\nLet $x$ denote the number of eruptions in a year. Then, $x$ can be modeled by a Poisson distribution\n\n$$\np(x) = \\frac{e^{-\\lambda} \\lambda^{x}}{x !}\n$$ {#eq-poisson}\n\nwhere $\\lambda$ is the rate of eruptions per year. Using @eq-poisson, the probability of an eruption in the next $t$ years can be calculated.\n\n| Name | Year |\n| -------------------- | ------ |\n| Current | 2021 |\n| Teneguía | 1971 |\n| Nambroque | 1949 |\n| El Charco | 1712 |\n| Volcán San Antonio | 1677 |\n| Volcán San Martin | 1646 |\n| Tajuya near El Paso | 1585 |\n| Montaña Quemada | 1492 |\n\n: Recent historic eruptions on La Palma {#tbl-history}\n\n@tbl-history summarises the eruptions recorded since the colonization of the islands by Europeans in the late 1400s.\n\n![Map of La Palma](images/la-palma-map.png){#fig-map}\n\nLa Palma is one of the west most islands in the Volcanic Archipelago of the Canary Islands (@fig-map). \n\n\n\n\n\n\n{{< embed notebooks/explore-earthquakes.qmd#fig-spatial-plot >}}\n\n\n\n\n\n\n\n\n\n\n@fig-spatial-plot shows the location of recent Earthquakes on La Palma.\n\n## Data & Methods {#sec-data-methods}\n\n## Conclusion\n\n## References {.unnumbered}\n\n:::{#refs}\n\n:::", 6 | "supporting": [ 7 | "index_files/figure-jats" 8 | ], 9 | "filters": [ 10 | "rmarkdown/pagebreak.lua" 11 | ], 12 | "includes": {}, 13 | "engineDependencies": {}, 14 | "preserve": null, 15 | "postProcess": false 16 | } 17 | } -------------------------------------------------------------------------------- /_freeze/index/execute-results/docx.json: -------------------------------------------------------------------------------- 1 | { 2 | "hash": "12f412c1727b545eefadd0ae0deef926", 3 | "result": { 4 | "engine": "knitr", 5 | "markdown": "---\ntitle: La Palma Earthquakes\nauthor:\n - name: Steve Purves\n orcid: 0000-0002-0760-5497\n corresponding: true\n email: steve@curvenote.com\n roles:\n - Investigation\n - Project administration\n - Software\n - Visualization\n affiliations:\n - Curvenote\n - name: Rowan Cockett\n orcid: 0000-0002-7859-8394\n corresponding: false\n roles: []\n affiliations:\n - Curvenote\nkeywords:\n - La Palma\n - Earthquakes\nabstract: |\n In September 2021, a significant jump in seismic activity on the island of La Palma (Canary Islands, Spain) signaled the start of a volcanic crisis that still continues at the time of writing. Earthquake data is continually collected and published by the Instituto Geográphico Nacional (IGN). ...\nplain-language-summary: |\n Earthquake data for the island of La Palma from the September 2021 eruption is found ...\nkey-points:\n - A web scraping script was developed to pull data from the Instituto Geogràphico Nacional into a machine-readable form for analysis\n - Earthquake events on La Palma are consistent with the presence of both mantle and crustal reservoirs.\ndate: last-modified\nbibliography: references.bib\ncitation:\n container-title: Earth and Space Science\nnumber-sections: true\n---\n\n\n\n\n\n\n## Introduction\n\n\n\n\n\n\n::: {.cell}\n\n```{.r .cell-code .hidden}\neruptions <- c(1492, 1585, 1646, 1677, 1712, 1949, 1971, 2021)\nn_eruptions <- length(eruptions)\n```\n:::\n\n::: {#cell-fig-timeline .cell}\n\n```{.r .cell-code .hidden}\npar(mar = c(3, 1, 1, 1) + 0.1)\nplot(eruptions, rep(0, n_eruptions), \n pch = \"|\", axes = FALSE)\naxis(1)\nbox()\n```\n\n::: {.cell-output-display}\n![Timeline of recent earthquakes on La Palma](index_files/figure-docx/fig-timeline-1.png){#fig-timeline fig-alt='An event plot of the years of the last 8 eruptions on La Palma.'}\n:::\n:::\n\n::: {.cell}\n\n```{.r .cell-code .hidden}\navg_years_between_eruptions <- mean(diff(eruptions[-n_eruptions]))\navg_years_between_eruptions\n```\n\n::: {.cell-output .cell-output-stdout .hidden}\n\n```\n[1] 79.83333\n```\n\n\n:::\n:::\n\n\n\n\n\n\nBased on data up to and including 1971, eruptions on La Palma happen every 79.8 years on average.\n\nStudies of the magma systems feeding the volcano, such as @marrero2019, have proposed that there are two main magma reservoirs feeding the Cumbre Vieja volcano; one in the mantle (30-40km depth) which charges and in turn feeds a shallower crustal reservoir (10-20km depth).\n\nEight eruptions have been recorded since the late 1400s (@fig-timeline).\n\nData and methods are discussed in @sec-data-methods.\n\nLet $x$ denote the number of eruptions in a year. Then, $x$ can be modeled by a Poisson distribution\n\n$$\np(x) = \\frac{e^{-\\lambda} \\lambda^{x}}{x !}\n$$ {#eq-poisson}\n\nwhere $\\lambda$ is the rate of eruptions per year. Using @eq-poisson, the probability of an eruption in the next $t$ years can be calculated.\n\n| Name | Year |\n| -------------------- | ------ |\n| Current | 2021 |\n| Teneguía | 1971 |\n| Nambroque | 1949 |\n| El Charco | 1712 |\n| Volcán San Antonio | 1677 |\n| Volcán San Martin | 1646 |\n| Tajuya near El Paso | 1585 |\n| Montaña Quemada | 1492 |\n\n: Recent historic eruptions on La Palma {#tbl-history}\n\n@tbl-history summarises the eruptions recorded since the colonization of the islands by Europeans in the late 1400s.\n\n![Map of La Palma](images/la-palma-map.png){#fig-map}\n\nLa Palma is one of the west most islands in the Volcanic Archipelago of the Canary Islands (@fig-map). \n\n\n\n\n\n\n{{< embed notebooks/explore-earthquakes.qmd#fig-spatial-plot >}}\n\n\n\n\n\n\n\n\n\n\n@fig-spatial-plot shows the location of recent Earthquakes on La Palma.\n\n## Data & Methods {#sec-data-methods}\n\n## Conclusion\n\n## References {.unnumbered}\n\n:::{#refs}\n\n:::", 6 | "supporting": [ 7 | "index_files/figure-docx" 8 | ], 9 | "filters": [ 10 | "rmarkdown/pagebreak.lua" 11 | ], 12 | "includes": {}, 13 | "engineDependencies": {}, 14 | "preserve": null, 15 | "postProcess": false 16 | } 17 | } -------------------------------------------------------------------------------- /_freeze/index/execute-results/tex.json: -------------------------------------------------------------------------------- 1 | { 2 | "hash": "12f412c1727b545eefadd0ae0deef926", 3 | "result": { 4 | "engine": "knitr", 5 | "markdown": "---\ntitle: La Palma Earthquakes\nauthor:\n - name: Steve Purves\n orcid: 0000-0002-0760-5497\n corresponding: true\n email: steve@curvenote.com\n roles:\n - Investigation\n - Project administration\n - Software\n - Visualization\n affiliations:\n - Curvenote\n - name: Rowan Cockett\n orcid: 0000-0002-7859-8394\n corresponding: false\n roles: []\n affiliations:\n - Curvenote\nkeywords:\n - La Palma\n - Earthquakes\nabstract: |\n In September 2021, a significant jump in seismic activity on the island of La Palma (Canary Islands, Spain) signaled the start of a volcanic crisis that still continues at the time of writing. Earthquake data is continually collected and published by the Instituto Geográphico Nacional (IGN). ...\nplain-language-summary: |\n Earthquake data for the island of La Palma from the September 2021 eruption is found ...\nkey-points:\n - A web scraping script was developed to pull data from the Instituto Geogràphico Nacional into a machine-readable form for analysis\n - Earthquake events on La Palma are consistent with the presence of both mantle and crustal reservoirs.\ndate: last-modified\nbibliography: references.bib\ncitation:\n container-title: Earth and Space Science\nnumber-sections: true\n---\n\n\n\n\n\n\n## Introduction\n\n\n\n\n\n\n::: {.cell}\n\n```{.r .cell-code .hidden}\neruptions <- c(1492, 1585, 1646, 1677, 1712, 1949, 1971, 2021)\nn_eruptions <- length(eruptions)\n```\n:::\n\n::: {#cell-fig-timeline .cell}\n\n```{.r .cell-code .hidden}\npar(mar = c(3, 1, 1, 1) + 0.1)\nplot(eruptions, rep(0, n_eruptions), \n pch = \"|\", axes = FALSE)\naxis(1)\nbox()\n```\n\n::: {.cell-output-display}\n![Timeline of recent earthquakes on La Palma](index_files/figure-pdf/fig-timeline-1.pdf){#fig-timeline fig-pos='H' fig-alt='An event plot of the years of the last 8 eruptions on La Palma.'}\n:::\n:::\n\n::: {.cell}\n\n```{.r .cell-code .hidden}\navg_years_between_eruptions <- mean(diff(eruptions[-n_eruptions]))\navg_years_between_eruptions\n```\n\n::: {.cell-output .cell-output-stdout .hidden}\n\n```\n[1] 79.83333\n```\n\n\n:::\n:::\n\n\n\n\n\n\nBased on data up to and including 1971, eruptions on La Palma happen every 79.8 years on average.\n\nStudies of the magma systems feeding the volcano, such as @marrero2019, have proposed that there are two main magma reservoirs feeding the Cumbre Vieja volcano; one in the mantle (30-40km depth) which charges and in turn feeds a shallower crustal reservoir (10-20km depth).\n\nEight eruptions have been recorded since the late 1400s (@fig-timeline).\n\nData and methods are discussed in @sec-data-methods.\n\nLet $x$ denote the number of eruptions in a year. Then, $x$ can be modeled by a Poisson distribution\n\n$$\np(x) = \\frac{e^{-\\lambda} \\lambda^{x}}{x !}\n$$ {#eq-poisson}\n\nwhere $\\lambda$ is the rate of eruptions per year. Using @eq-poisson, the probability of an eruption in the next $t$ years can be calculated.\n\n| Name | Year |\n| -------------------- | ------ |\n| Current | 2021 |\n| Teneguía | 1971 |\n| Nambroque | 1949 |\n| El Charco | 1712 |\n| Volcán San Antonio | 1677 |\n| Volcán San Martin | 1646 |\n| Tajuya near El Paso | 1585 |\n| Montaña Quemada | 1492 |\n\n: Recent historic eruptions on La Palma {#tbl-history}\n\n@tbl-history summarises the eruptions recorded since the colonization of the islands by Europeans in the late 1400s.\n\n![Map of La Palma](images/la-palma-map.png){#fig-map}\n\nLa Palma is one of the west most islands in the Volcanic Archipelago of the Canary Islands (@fig-map). \n\n\n\n\n\n\n{{< embed notebooks/explore-earthquakes.qmd#fig-spatial-plot >}}\n\n\n\n\n\n\n\n\n\n\n@fig-spatial-plot shows the location of recent Earthquakes on La Palma.\n\n## Data & Methods {#sec-data-methods}\n\n## Conclusion\n\n## References {.unnumbered}\n\n:::{#refs}\n\n:::", 6 | "supporting": [ 7 | "index_files/figure-pdf" 8 | ], 9 | "filters": [ 10 | "rmarkdown/pagebreak.lua" 11 | ], 12 | "includes": {}, 13 | "engineDependencies": {}, 14 | "preserve": null, 15 | "postProcess": false 16 | } 17 | } -------------------------------------------------------------------------------- /site_libs/quarto-html/quarto-syntax-highlighting.css: -------------------------------------------------------------------------------- 1 | /* quarto syntax highlight colors */ 2 | :root { 3 | --quarto-hl-ot-color: #003B4F; 4 | --quarto-hl-at-color: #657422; 5 | --quarto-hl-ss-color: #20794D; 6 | --quarto-hl-an-color: #5E5E5E; 7 | --quarto-hl-fu-color: #4758AB; 8 | --quarto-hl-st-color: #20794D; 9 | --quarto-hl-cf-color: #003B4F; 10 | --quarto-hl-op-color: #5E5E5E; 11 | --quarto-hl-er-color: #AD0000; 12 | --quarto-hl-bn-color: #AD0000; 13 | --quarto-hl-al-color: #AD0000; 14 | --quarto-hl-va-color: #111111; 15 | --quarto-hl-bu-color: inherit; 16 | --quarto-hl-ex-color: inherit; 17 | --quarto-hl-pp-color: #AD0000; 18 | --quarto-hl-in-color: #5E5E5E; 19 | --quarto-hl-vs-color: #20794D; 20 | --quarto-hl-wa-color: #5E5E5E; 21 | --quarto-hl-do-color: #5E5E5E; 22 | --quarto-hl-im-color: #00769E; 23 | --quarto-hl-ch-color: #20794D; 24 | --quarto-hl-dt-color: #AD0000; 25 | --quarto-hl-fl-color: #AD0000; 26 | --quarto-hl-co-color: #5E5E5E; 27 | --quarto-hl-cv-color: #5E5E5E; 28 | --quarto-hl-cn-color: #8f5902; 29 | --quarto-hl-sc-color: #5E5E5E; 30 | --quarto-hl-dv-color: #AD0000; 31 | --quarto-hl-kw-color: #003B4F; 32 | } 33 | 34 | /* other quarto variables */ 35 | :root { 36 | --quarto-font-monospace: SFMono-Regular, Menlo, Monaco, Consolas, "Liberation Mono", "Courier New", monospace; 37 | } 38 | 39 | pre > code.sourceCode > span { 40 | color: #003B4F; 41 | } 42 | 43 | code span { 44 | color: #003B4F; 45 | } 46 | 47 | code.sourceCode > span { 48 | color: #003B4F; 49 | } 50 | 51 | div.sourceCode, 52 | div.sourceCode pre.sourceCode { 53 | color: #003B4F; 54 | } 55 | 56 | code span.ot { 57 | color: #003B4F; 58 | font-style: inherit; 59 | } 60 | 61 | code span.at { 62 | color: #657422; 63 | font-style: inherit; 64 | } 65 | 66 | code span.ss { 67 | color: #20794D; 68 | font-style: inherit; 69 | } 70 | 71 | code span.an { 72 | color: #5E5E5E; 73 | font-style: inherit; 74 | } 75 | 76 | code span.fu { 77 | color: #4758AB; 78 | font-style: inherit; 79 | } 80 | 81 | code span.st { 82 | color: #20794D; 83 | font-style: inherit; 84 | } 85 | 86 | code span.cf { 87 | color: #003B4F; 88 | font-style: inherit; 89 | } 90 | 91 | code span.op { 92 | color: #5E5E5E; 93 | font-style: inherit; 94 | } 95 | 96 | code span.er { 97 | color: #AD0000; 98 | font-style: inherit; 99 | } 100 | 101 | code span.bn { 102 | color: #AD0000; 103 | font-style: inherit; 104 | } 105 | 106 | code span.al { 107 | color: #AD0000; 108 | font-style: inherit; 109 | } 110 | 111 | code span.va { 112 | color: #111111; 113 | font-style: inherit; 114 | } 115 | 116 | code span.bu { 117 | font-style: inherit; 118 | } 119 | 120 | code span.ex { 121 | font-style: inherit; 122 | } 123 | 124 | code span.pp { 125 | color: #AD0000; 126 | font-style: inherit; 127 | } 128 | 129 | code span.in { 130 | color: #5E5E5E; 131 | font-style: inherit; 132 | } 133 | 134 | code span.vs { 135 | color: #20794D; 136 | font-style: inherit; 137 | } 138 | 139 | code span.wa { 140 | color: #5E5E5E; 141 | font-style: italic; 142 | } 143 | 144 | code span.do { 145 | color: #5E5E5E; 146 | font-style: italic; 147 | } 148 | 149 | code span.im { 150 | color: #00769E; 151 | font-style: inherit; 152 | } 153 | 154 | code span.ch { 155 | color: #20794D; 156 | font-style: inherit; 157 | } 158 | 159 | code span.dt { 160 | color: #AD0000; 161 | font-style: inherit; 162 | } 163 | 164 | code span.fl { 165 | color: #AD0000; 166 | font-style: inherit; 167 | } 168 | 169 | code span.co { 170 | color: #5E5E5E; 171 | font-style: inherit; 172 | } 173 | 174 | code span.cv { 175 | color: #5E5E5E; 176 | font-style: italic; 177 | } 178 | 179 | code span.cn { 180 | color: #8f5902; 181 | font-style: inherit; 182 | } 183 | 184 | code span.sc { 185 | color: #5E5E5E; 186 | font-style: inherit; 187 | } 188 | 189 | code span.dv { 190 | color: #AD0000; 191 | font-style: inherit; 192 | } 193 | 194 | code span.kw { 195 | color: #003B4F; 196 | font-style: inherit; 197 | } 198 | 199 | .prevent-inlining { 200 | content: " code.sourceCode > span { 40 | color: #003B4F; 41 | } 42 | 43 | code span { 44 | color: #003B4F; 45 | } 46 | 47 | code.sourceCode > span { 48 | color: #003B4F; 49 | } 50 | 51 | div.sourceCode, 52 | div.sourceCode pre.sourceCode { 53 | color: #003B4F; 54 | } 55 | 56 | code span.ot { 57 | color: #003B4F; 58 | font-style: inherit; 59 | } 60 | 61 | code span.at { 62 | color: #657422; 63 | font-style: inherit; 64 | } 65 | 66 | code span.ss { 67 | color: #20794D; 68 | font-style: inherit; 69 | } 70 | 71 | code span.an { 72 | color: #5E5E5E; 73 | font-style: inherit; 74 | } 75 | 76 | code span.fu { 77 | color: #4758AB; 78 | font-style: inherit; 79 | } 80 | 81 | code span.st { 82 | color: #20794D; 83 | font-style: inherit; 84 | } 85 | 86 | code span.cf { 87 | color: #003B4F; 88 | font-style: inherit; 89 | } 90 | 91 | code span.op { 92 | color: #5E5E5E; 93 | font-style: inherit; 94 | } 95 | 96 | code span.er { 97 | color: #AD0000; 98 | font-style: inherit; 99 | } 100 | 101 | code span.bn { 102 | color: #AD0000; 103 | font-style: inherit; 104 | } 105 | 106 | code span.al { 107 | color: #AD0000; 108 | font-style: inherit; 109 | } 110 | 111 | code span.va { 112 | color: #111111; 113 | font-style: inherit; 114 | } 115 | 116 | code span.bu { 117 | font-style: inherit; 118 | } 119 | 120 | code span.ex { 121 | font-style: inherit; 122 | } 123 | 124 | code span.pp { 125 | color: #AD0000; 126 | font-style: inherit; 127 | } 128 | 129 | code span.in { 130 | color: #5E5E5E; 131 | font-style: inherit; 132 | } 133 | 134 | code span.vs { 135 | color: #20794D; 136 | font-style: inherit; 137 | } 138 | 139 | code span.wa { 140 | color: #5E5E5E; 141 | font-style: italic; 142 | } 143 | 144 | code span.do { 145 | color: #5E5E5E; 146 | font-style: italic; 147 | } 148 | 149 | code span.im { 150 | color: #00769E; 151 | font-style: inherit; 152 | } 153 | 154 | code span.ch { 155 | color: #20794D; 156 | font-style: inherit; 157 | } 158 | 159 | code span.dt { 160 | color: #AD0000; 161 | font-style: inherit; 162 | } 163 | 164 | code span.fl { 165 | color: #AD0000; 166 | font-style: inherit; 167 | } 168 | 169 | code span.co { 170 | color: #5E5E5E; 171 | font-style: inherit; 172 | } 173 | 174 | code span.cv { 175 | color: #5E5E5E; 176 | font-style: italic; 177 | } 178 | 179 | code span.cn { 180 | color: #8f5902; 181 | font-style: inherit; 182 | } 183 | 184 | code span.sc { 185 | color: #5E5E5E; 186 | font-style: inherit; 187 | } 188 | 189 | code span.dv { 190 | color: #AD0000; 191 | font-style: inherit; 192 | } 193 | 194 | code span.kw { 195 | color: #003B4F; 196 | font-style: inherit; 197 | } 198 | 199 | .prevent-inlining { 200 | content: "s.tolerance[a.direction],e(a),l=t,i=!1}function h(){i||(i=!0,n=requestAnimationFrame(c))}var u=!!o&&{passive:!0,capture:!1};return t.addEventListener("scroll",h,u),c(),{destroy:function(){cancelAnimationFrame(n),t.removeEventListener("scroll",h,u)}}}function o(t){return t===Object(t)?t:{down:t,up:t}}function s(t,n){n=n||{},Object.assign(this,s.options,n),this.classes=Object.assign({},s.options.classes,n.classes),this.elem=t,this.tolerance=o(this.tolerance),this.offset=o(this.offset),this.initialised=!1,this.frozen=!1}return s.prototype={constructor:s,init:function(){return s.cutsTheMustard&&!this.initialised&&(this.addClass("initial"),this.initialised=!0,setTimeout(function(t){t.scrollTracker=n(t.scroller,{offset:t.offset,tolerance:t.tolerance},t.update.bind(t))},100,this)),this},destroy:function(){this.initialised=!1,Object.keys(this.classes).forEach(this.removeClass,this),this.scrollTracker.destroy()},unpin:function(){!this.hasClass("pinned")&&this.hasClass("unpinned")||(this.addClass("unpinned"),this.removeClass("pinned"),this.onUnpin&&this.onUnpin.call(this))},pin:function(){this.hasClass("unpinned")&&(this.addClass("pinned"),this.removeClass("unpinned"),this.onPin&&this.onPin.call(this))},freeze:function(){this.frozen=!0,this.addClass("frozen")},unfreeze:function(){this.frozen=!1,this.removeClass("frozen")},top:function(){this.hasClass("top")||(this.addClass("top"),this.removeClass("notTop"),this.onTop&&this.onTop.call(this))},notTop:function(){this.hasClass("notTop")||(this.addClass("notTop"),this.removeClass("top"),this.onNotTop&&this.onNotTop.call(this))},bottom:function(){this.hasClass("bottom")||(this.addClass("bottom"),this.removeClass("notBottom"),this.onBottom&&this.onBottom.call(this))},notBottom:function(){this.hasClass("notBottom")||(this.addClass("notBottom"),this.removeClass("bottom"),this.onNotBottom&&this.onNotBottom.call(this))},shouldUnpin:function(t){return"down"===t.direction&&!t.top&&t.toleranceExceeded},shouldPin:function(t){return"up"===t.direction&&t.toleranceExceeded||t.top},addClass:function(t){this.elem.classList.add.apply(this.elem.classList,this.classes[t].split(" "))},removeClass:function(t){this.elem.classList.remove.apply(this.elem.classList,this.classes[t].split(" "))},hasClass:function(t){return this.classes[t].split(" ").every(function(t){return this.classList.contains(t)},this.elem)},update:function(t){t.isOutOfBounds||!0!==this.frozen&&(t.top?this.top():this.notTop(),t.bottom?this.bottom():this.notBottom(),this.shouldUnpin(t)?this.unpin():this.shouldPin(t)&&this.pin())}},s.options={tolerance:{up:0,down:0},offset:0,scroller:t()?window:null,classes:{frozen:"headroom--frozen",pinned:"headroom--pinned",unpinned:"headroom--unpinned",top:"headroom--top",notTop:"headroom--not-top",bottom:"headroom--bottom",notBottom:"headroom--not-bottom",initial:"headroom"}},s.cutsTheMustard=!!(t()&&function(){}.bind&&"classList"in document.documentElement&&Object.assign&&Object.keys&&requestAnimationFrame),s}); 8 | -------------------------------------------------------------------------------- /_freeze/site_libs/manuscript-notebook/headroom.min.js: -------------------------------------------------------------------------------- 1 | /*! 2 | * headroom.js v0.12.0 - Give your page some headroom. 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