├── .dockerignore ├── .github └── workflows │ ├── build-static.yml │ ├── build-staticx.yml │ ├── docs.yml │ ├── release.yml │ └── rust.yml ├── .gitignore ├── Cargo.toml ├── LICENSE ├── README.md ├── benches └── random_intervals.rs ├── ci └── build.rs.ci ├── docker ├── Dockerfile.gnu-static ├── README.md ├── build-static.sh └── codex-login.sh ├── docs.sh ├── examples └── expressions.rs.skip ├── src ├── bedder_bed.rs ├── bedder_vcf.rs ├── chrom_ordering.rs ├── cli │ ├── closest.rs │ ├── full.rs │ ├── intersect.rs │ ├── mod.rs │ └── shared.rs ├── column.rs ├── glibc_shims.rs ├── hts_format.rs ├── intersection.rs ├── intersections.rs ├── interval.rs ├── lib.rs ├── main.rs ├── position.rs ├── py.rs ├── py_test.rs ├── report.rs ├── report_options.rs ├── skip.rs ├── sniff.rs ├── string.rs ├── tests │ ├── mod.rs │ └── parse_intersections.rs └── writer.rs └── tests ├── a.bed ├── b.bed ├── examples ├── README.md ├── aa.bed ├── bb.bed ├── example.py └── fake.fai ├── hg38.small.fai ├── 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