├── .coveragerc ├── .gitignore ├── .install-htslib.sh ├── .travis.yml ├── LICENSE ├── MANIFEST.in ├── README.md ├── docs ├── .nojekyll ├── Makefile ├── _sources │ └── index.rst.txt ├── _static │ ├── ajax-loader.gif │ ├── alabaster.css │ ├── basic.css │ ├── comment-bright.png │ ├── comment-close.png │ ├── comment.png │ ├── custom.css │ ├── doctools.js │ ├── down-pressed.png │ ├── down.png │ ├── file.png │ ├── jquery-3.1.0.js │ ├── jquery.js │ ├── minus.png │ ├── plus.png │ ├── pygments.css │ ├── searchtools.js │ ├── underscore-1.3.1.js │ ├── underscore.js │ ├── up-pressed.png │ ├── up.png │ └── websupport.js ├── conf.py ├── genindex.html ├── index.html ├── index.rst ├── objects.inv ├── search.html └── searchindex.js ├── hts ├── __init__.py ├── bam.py ├── fai.py ├── fisher.py ├── hts_concat.h ├── hts_extra.c ├── hts_extra.h ├── htsffi.py ├── tbx.py ├── test │ ├── __init__.py │ ├── e.sam │ ├── example.gtf.gz │ ├── example.gtf.gz.tbi │ ├── small.bam │ ├── small.bam.bai │ ├── t.fa │ ├── 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