├── .gitignore ├── LICENSE ├── README.md ├── gene-sets └── GRCh37 │ ├── ad_genes │ ├── README.md │ └── make.sh │ ├── ar_genes │ ├── README.md │ └── make.sh │ ├── cancer_genes │ ├── README.md │ └── make.sh │ ├── eiee_genes │ ├── README.md │ ├── make.py │ └── make.sh │ ├── heart_genes │ ├── README.md │ ├── make.py │ └── make.sh │ └── hi_genes │ ├── README.md │ ├── make.py │ └── make.sh ├── pathoscore.py ├── requirements.txt ├── score-sets └── GRCh37 │ ├── CADD │ ├── README.md │ ├── filter.py │ └── make.sh │ ├── CCR │ ├── README.md │ └── make.sh │ ├── DANN │ ├── README.md │ └── make.sh │ ├── GERP │ └── make.sh │ ├── MCAP │ ├── README.md │ └── make.sh │ ├── MPC │ └── make.sh │ ├── MTR │ ├── README.md │ └── make.sh │ ├── REVEL │ ├── README.md │ └── make.sh │ ├── RVIS │ ├── README.md │ ├── make.py │ └── make.sh │ ├── VVP │ ├── README.md │ └── make.sh │ ├── aloft │ ├── README.md │ ├── make.py │ └── make.sh │ ├── fathmm │ ├── README.md │ └── make.sh │ ├── fitcons │ └── make.sh │ ├── metasvm │ ├── README.md │ └── make.sh │ ├── mis_Z │ ├── README.md │ ├── make.py │ └── make.sh │ ├── pLI │ ├── make.py │ └── make.sh │ ├── phastCons │ ├── README.md │ └── make.sh │ ├── phylop │ ├── README.md │ └── make.sh │ ├── polyphen2 │ ├── README.md │ └── make.sh │ └── sift │ ├── README.md │ └── make.sh ├── scripts ├── bcsq.sh └── gnomad │ ├── af.conf │ ├── makeexac.sh │ └── makegnomad.sh ├── tmpl.html └── truth-sets ├── GRCh37 ├── clinvar │ ├── README.md │ ├── benchmark │ │ ├── README.md │ │ └── make.sh │ ├── make.py │ └── make.sh ├── homsy │ ├── README.md │ ├── make.py │ └── make.sh ├── samocha │ ├── README.md │ ├── make.py │ └── make.sh ├── wellderly │ ├── README.md │ └── make.sh └── wigler-autism │ ├── README.md │ ├── make.py │ └── make.sh ├── score-lookup.txt └── score.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/quinlan-lab/pathoscore/HEAD/.gitignore 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