├── .ci ├── azure-pipelines-amdgpu.yml ├── azure-pipelines-regression.yml └── azure-pipelines.yml ├── .codespell-ignore-words ├── .codespellrc ├── .devcontainer ├── cuda-azp-agent-in-docker │ ├── Dockerfile │ ├── build.sh │ └── start.sh ├── cuda-container │ ├── Dockerfile │ └── devcontainer.json ├── gcc-container │ ├── Dockerfile │ └── devcontainer.json ├── rocm-azp-agent-in-docker │ ├── Dockerfile │ ├── build.sh │ └── start.sh └── rocm-container │ ├── Dockerfile │ ├── build-by-step.sh │ ├── build.sh │ ├── devcontainer.json │ └── rocm_so.conf ├── .github ├── CODEOWNERS ├── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature-proposal.md ├── dependabot.yml ├── pull_request_template.md └── workflows │ ├── check_changes.yml │ ├── checkpoint-restart-refine.yml │ ├── checkpoint-restart.yml │ ├── clang-tidy-comments.yml │ ├── clang-tidy.yml │ ├── claude-code-review.yml │ ├── claude.yml │ ├── cmake-arm64-debug.yml │ ├── cmake-arm64-hwasan.yml │ ├── cmake-arm64-release.yml │ ├── cmake-macos.yml │ ├── cmake.yml │ ├── codeql.yml │ ├── codeql │ └── codeql-config.yml │ ├── codespell.yml │ ├── codespell_ignore.txt │ ├── cuda.yml │ ├── dependencies │ ├── dependencies_ccache.sh │ ├── dependencies_dpcpp.sh │ ├── dependencies_hip.sh │ └── requirements.txt │ ├── dependency-review.yml │ ├── docs-toctree.yml │ ├── docs.yml │ ├── hip.yml │ ├── hydro-wave-convergence.yml │ ├── mhd-asan.yml │ ├── mhd.yml │ ├── openpmd.yml │ ├── scorecard.yml │ ├── sonarcloud.yml │ └── warnings.yml ├── .gitignore ├── .gitmodules ├── .mailmap ├── .pre-commit-config.yaml ├── AGENTS.md ├── CITATION.cff ├── CLAUDE.md ├── CMakeLists.txt ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── docs ├── apa-6th-edition.csl ├── markdown │ ├── about.md │ ├── amr_grid_refinement.md │ ├── amr_grid_refinement.svg │ ├── citation.md │ ├── contributing.md │ ├── debugging.md │ ├── developer_onboarding.md │ ├── developing_problem_generators.md │ ├── dust_module.md │ ├── equations.md │ ├── error_checking.md │ ├── extra.css │ ├── flowchart.md │ ├── gallery.md │ ├── howto_clang_tidy.md │ ├── html │ │ └── runtime-calculator │ │ │ ├── index.html │ │ │ ├── script.js │ │ │ └── style.css │ ├── hydro_integrator.md │ ├── index.md │ ├── insitu_analysis.md │ ├── instability.md │ ├── installation.md │ ├── javascripts │ │ └── mathjax.js │ ├── mhd_module.md │ ├── parameters.md │ ├── performance.md │ ├── postprocessing.md │ ├── references.bib │ ├── running_on_hpc_clusters.md │ ├── star_formation.md │ ├── tests │ │ ├── attach │ │ │ ├── hydro_shuosher.png │ │ │ ├── hydro_sms.png │ │ │ ├── radcoupling.png │ │ │ ├── radcoupling_rsla.png │ │ │ ├── radhydro_pulse_density-1.png │ │ │ ├── radhydro_pulse_density.png │ │ │ ├── radhydro_pulse_temperature-1.png │ │ │ ├── radhydro_pulse_temperature.png │ │ │ ├── radhydro_pulse_velocity-1.png │ │ │ ├── radhydro_pulse_velocity.png │ │ │ ├── radhydro_uniform_advecting_temperature-nobeta.png │ │ │ ├── radhydro_uniform_advecting_temperature.png │ │ │ ├── radhydro_uniform_advecting_velocity-nobeta.png │ │ │ ├── radhydro_uniform_advecting_velocity.png │ │ │ └── radshock_cgs_temperature.png │ │ ├── energy_exchange.md │ │ ├── index.md │ │ ├── parse_problems.py │ │ ├── radhydro_pulse.md │ │ ├── radhydro_uniform_adv.md │ │ ├── radshock.md │ │ ├── shu_osher.md │ │ ├── sms.md │ │ └── table_of_all_problems.md │ └── volume_render_sphere.png ├── mkdocs.yml └── requirements.txt ├── extern ├── ChabrierIMFCalculations.nb ├── Doppler-spectrum │ └── exact_flux_density.csv ├── Equilibrium.nb ├── LowrieEdwards │ ├── Tmat_fig30.csv │ ├── Trad_fig30.csv │ ├── radshock.py │ ├── shock.txt │ └── shock_Mach_30.0.txt ├── ShuOsher_athena_3c_hllc_vl.txt ├── SuOlson │ ├── 100pt_tau10p0.dat │ ├── 100pt_tau1p0.dat │ └── su_olson2.f ├── Toro │ ├── E1RPEX.F │ ├── E1RPEX_old.INI │ ├── e1rpex.ini │ └── e1rpex.out ├── agora_data │ ├── AgoraGalaxy_particles_LOW.tar.gz │ ├── README.txt │ ├── create_amrex_particles.py │ ├── filter_particles.py │ └── vcirc.tar.gz ├── cooling │ ├── CloudyData_UVB=HM2012_resampled.h5 │ ├── Koyama_Inutsuka_cooling.py │ ├── README.md │ ├── cct_cooling_reference_solution.csv │ ├── cloudy_cooling_tools_tables.py │ ├── fast_log_round_trip_error_analysis.md │ ├── grackle_reference_solution.csv │ ├── grackle_tables.py │ ├── integrate_cooling_zone.py │ ├── isrf_1000Go_grains.h5 │ ├── isrf_1000Go_grains_resampled.h5 │ ├── resample_cloudy_cooling_tables.py │ ├── resample_grackle_cooling_tables.py │ ├── test_cloudy_cooling_onezone.py │ └── test_cooling_onezone.py ├── data │ └── dust │ │ ├── rad_dust_exact_chat0.1.csv │ │ └── rad_dust_exact_chat0.8.csv ├── dust_shell │ ├── analyze.py │ ├── initial_conditions.txt │ ├── matplotlibrc │ ├── shell_velocity.pdf │ └── solution.py ├── highmach_reference.txt ├── marshak_similarity.csv ├── ppm1d │ ├── exact_leblanc.f │ ├── exact_riemann.f │ ├── leblanc.dat │ └── output ├── pressure_tube │ ├── initial_conditions.txt │ ├── optically_thin.py │ ├── optically_thin_wind.txt │ └── solution.py ├── quadrature │ └── quad.py ├── quokka_graphic.png ├── sedov │ ├── README │ ├── sedov.ipynb │ ├── sedov3_qp.dek │ ├── sedov3_qp.f90 │ ├── sedov_library_qp.f90 │ └── spherical_standard_omega0p00.dat └── weno_weights.ipynb ├── inputs ├── Advection.in ├── Advection2D.in ├── AdvectionSemiellipse.in ├── AlfvenWaveCircular.in ├── AlfvenWaveLinear.in ├── BinaryOrbitAMR.in ├── BinaryOrbitCIC.in ├── BinaryOrbit_particles.txt ├── BinaryOrbit_refactor.in ├── BinaryOrbit_refactor_init.in ├── BinaryOrbit_refactor_splitparticle.in ├── BinaryOrbit_split.in ├── BrioWuShockTube.in ├── Cooling.in ├── CurrentSheet.in ├── DiskGalaxy.in ├── DustDamping.in ├── DustDrag.in ├── DustDrag3D.in ├── DustSoundwave.in ├── FCQuantities.in ├── FastWave.in ├── FieldLoop.in ├── GravRadParticle3D.in ├── GravRadParticles3D.txt ├── GravRadParticles3D_cic_only.txt ├── GravRadParticles3D_rad_only.txt ├── HighMach_reference.in ├── HydroContact.in ├── HydroHighMach.in ├── HydroLeblanc.in ├── HydroQuirk.in ├── HydroSMS.in ├── HydroShocktube.in ├── HydroShocktubeCMA.in ├── HydroShuOsher.in ├── HydroVacuum.in ├── HydroWave.in ├── HydroWaveFc.in ├── KelvinHelmholz.in ├── KelvinHelmholz_512.in ├── KelvinHelmholz_tracer.in ├── MHDBitwiseICs.in ├── MHDBlast.in ├── MHDQuirk.in ├── MarshakAsymptoticCorr.in ├── NscbcChannel.in ├── NscbcVortex.in ├── ODEIntegration.in ├── OrszagTang.in ├── ParticleAccretion.in ├── ParticleAccretionBH.in ├── ParticleCreation.in ├── ParticleCreationAMR.in ├── ParticleRadiation.in ├── ParticleRadiationFastlog.in ├── ParticleRadiationLog.in ├── ParticleSF.in ├── ParticleSF2.in ├── ParticleSink.in ├── ParticleSinkFormation.in ├── PassiveScalar.in ├── PopIII.in ├── PrimordialChem.in ├── RT2D.in ├── RT3D.in ├── RadDust.in ├── RadDustMG.in ├── RadForce.in ├── RadLineCooling.in ├── RadLineCoolingCoupled.in ├── RadLineCoolingMG.in ├── RadMarshak.in ├── RadMarshakAsymptotic.in ├── RadMarshakCGS.in ├── RadMarshakDust.in ├── RadMarshakDustPE.in ├── RadMarshakDustPEdecoupled.in ├── RadMarshakVaytet.in ├── RadMatterCoupling.in ├── RadMatterCouplingRSLA.in ├── RadParticles1D.in ├── RadParticles1D.txt ├── RadParticles2D.in ├── RadParticles2D.txt ├── RadStreaming.in ├── RadStreamingY.in ├── RadSuOlson.in ├── RadTube.in ├── RadhydroBB.in ├── RadhydroPulse.in ├── RadhydroPulseDyn.in ├── RadhydroPulseGrey.in ├── RadhydroPulseMGconst.in ├── RadhydroShell.in ├── RadhydroShock.in ├── RadhydroShockCGS.in ├── RadhydroShockMultigroup.in ├── RadhydroUniformAdvecting.in ├── RandomBlast.in ├── RandomBlastAMR_regression.in ├── RandomBlast_regression.in ├── ResampledCoolingTest.in ├── SN.in ├── SN.txt ├── SN_long_grackle.in ├── SN_long_resampled.in ├── ShockCloud_32.in ├── ShockCloud_64.in ├── ShockCloud_64_regression.in ├── Sink_2.txt ├── Sink_40.txt ├── SphericalCollapse.in ├── SphericalCollapseAMR_regression.in ├── SphericalCollapse_regression.in ├── StarCluster.in ├── StarCluster_AMR.in ├── TabulatedCooling.in ├── TestParticles.txt ├── TestParticlesNoRad.txt ├── Tophat.in ├── alfven_wave_linear_regression.in ├── ascent_actions.yaml ├── beam.in ├── benchmark_unigrid_1024.in ├── benchmark_unigrid_2048.in ├── benchmark_unigrid_256.in ├── benchmark_unigrid_4096.in ├── benchmark_unigrid_512.in ├── benchmark_unigrid_8192.in ├── blast2d.in ├── blast2d_amr_example.in ├── blast_32.in ├── blast_64.in ├── blast_amr_maxlev2.in ├── blast_unigrid_1024.in ├── blast_unigrid_128.in ├── blast_unigrid_128_AMR_regression.in ├── blast_unigrid_128_cpu.in ├── blast_unigrid_128_regression.in ├── blast_unigrid_2048.in ├── blast_unigrid_256.in ├── blast_unigrid_256_cpu.in ├── blast_unigrid_512.in ├── blast_unigrid_512_cpu.in ├── checkpoint_restart_refine_test.sh ├── checkpoint_restart_test.sh ├── implosion.in ├── leak_suppress.txt ├── lum_demo_2groups.csv ├── lum_demo_2groups_fastlog.csv ├── lum_demo_2groups_log.csv ├── radhydro_shell_1024.in ├── radhydro_shell_2048.in ├── radhydro_shell_256.in ├── radhydro_shell_512.in ├── radhydro_shell_amr.in ├── radhydro_shell_amr_512.in ├── radhydro_shell_regression.in ├── shadow.in ├── sink.txt ├── sink4.txt └── sink_moving.txt ├── paper ├── SuOlsonTest.pdf ├── aas_macros.sty ├── abstract.txt ├── beam1.png ├── beam2.png ├── density_1.0000.pdf ├── hydro_contact.pdf ├── hydro_leblanc_6.0000.pdf ├── hydro_leblanc_eint_6.0000.pdf ├── hydro_shocktube_0.4000.pdf ├── hydro_shuosher.pdf ├── hydro_sms_1.0000.pdf ├── hydro_vacuum_0.1500.pdf ├── hydro_vacuum_eint_0.1500.pdf ├── implosion.png ├── latexdiff.cfg ├── linear_wave.csv ├── make_tarball.py ├── marshak_wave_cgs_gastemperature.pdf ├── matplotlibrc ├── mnras.bst ├── mnras.cls ├── performance_a100.csv ├── plot_convergence.py ├── pressure_1.0000.pdf ├── quokka.bib ├── quokka.pdf ├── quokka.tex ├── quokka_diff.pdf ├── quokka_diff.tex ├── quokka_full.pdf ├── quokka_v1.tex ├── quokka_zoom.pdf ├── quokka_zoom2.pdf ├── radcoupling_rsla.pdf ├── radiation_force_tube_vel.pdf ├── radiation_pressure_tube.pdf ├── radshock_cgs_temperature.pdf ├── shadow1.png ├── shadow2.png ├── shell_velocity.pdf ├── strong_scaling.csv ├── wave_convergence.pdf ├── weak_scaling_hydro.csv ├── weak_scaling_hydro_plm.csv └── weak_scaling_radhydro.csv ├── regression └── quokka-tests.ini ├── run-codeql.sh ├── scripts ├── bash │ ├── compute_sloc_by_author.py │ ├── docs_build.sh │ ├── docs_build_and_view.sh │ ├── format.sh │ ├── make_movie.sh │ ├── mpirun-singleton-wrapper.sh │ ├── run-cuda-container.sh │ ├── slurm_job_monitor.sh │ ├── test_gpu_race.sh │ └── tidy.sh ├── check_docs_toctree.py ├── hpc_profiles │ ├── delta_ai.profile │ ├── frontier.profile │ ├── gadi_hopper.profile │ ├── moth-sanitizer.profile │ ├── moth.profile │ └── setonix-gpu.profile ├── pbs │ ├── gpuhopper-1node.pbs │ └── gpuvolta │ │ ├── amr-shell-1node.pbs │ │ ├── amr-shell-2nodes.pbs │ │ ├── amr-shell-4nodes.pbs │ │ ├── amr-shell-8nodes.pbs │ │ ├── cpu-sedov-1node.pbs │ │ ├── cpu-sedov-64nodes.pbs │ │ ├── cpu-sedov-8nodes.pbs │ │ ├── gpu_wrapper_amr_shell.sh │ │ ├── gpu_wrapper_cooling_1024.sh │ │ ├── gpu_wrapper_sedov_1024.sh │ │ ├── gpu_wrapper_sedov_2048.sh │ │ ├── gpu_wrapper_sedov_256.sh │ │ ├── gpu_wrapper_sedov_512.sh │ │ ├── gpu_wrapper_shell_1024.sh │ │ ├── gpu_wrapper_shell_2048.sh │ │ ├── gpu_wrapper_shell_256.sh │ │ ├── gpu_wrapper_shell_512.sh │ │ ├── sedov-1gpu.pbs │ │ ├── sedov-1node.pbs │ │ ├── sedov-64nodes.pbs │ │ ├── sedov-8nodes.pbs │ │ ├── shell-1gpu.pbs │ │ ├── shell-1node.pbs │ │ ├── shell-64nodes.pbs │ │ └── shell-8nodes.pbs ├── python │ ├── hydro_wave_convergence_analysis.py │ ├── plot_PDF_2D_outputs.py │ ├── plot_face_velocities.py │ └── quick_plot ├── read_fc_print.py └── slurm │ ├── dtai-1node.submit │ ├── dtai-64node.submit │ ├── dtai-8node.submit │ ├── frontier-1node.submit │ ├── frontier-4096node.submit │ ├── frontier-512node.submit │ ├── frontier-64node.submit │ ├── frontier-8node.submit │ ├── setonix-1node.submit │ ├── setonix-64nodes.submit │ └── setonix-8nodes.submit ├── sonar-project.properties ├── src ├── .clang-format ├── .clang-tidy ├── CMakeLists.txt ├── CPPLINT.cfg ├── Factory.H ├── QuokkaSimulation.cpp ├── QuokkaSimulation.hpp ├── SimulationData.hpp ├── chemistry │ ├── Chemistry.cpp │ └── Chemistry.hpp ├── cooling │ ├── ResampledCooling.cpp │ └── ResampledCooling.hpp ├── dust │ ├── DustState.hpp │ ├── dustRiemannSolver.hpp │ ├── dust_system.cpp │ └── dust_system.hpp ├── grid.hpp ├── hydro │ ├── EOS.hpp │ ├── HLLC.hpp │ ├── HLLD.hpp │ ├── HydroState.hpp │ ├── LLF.hpp │ ├── LLF_mhd.hpp │ ├── NSCBC_inflow.hpp │ ├── NSCBC_outflow.hpp │ ├── hydro_system.cpp │ ├── hydro_system.hpp │ ├── mhd_system.cpp │ └── mhd_system.hpp ├── hyperbolic_system.cpp ├── hyperbolic_system.hpp ├── io │ ├── DiagBase.H │ ├── DiagBase.cpp │ ├── DiagFilter.H │ ├── DiagFilter.cpp │ ├── DiagFramePlane.H │ ├── DiagFramePlane.cpp │ ├── DiagPDF.H │ ├── DiagPDF.cpp │ ├── DiagPlotfile.H │ ├── DiagPlotfile.cpp │ ├── DiagProjectionPlot.H │ ├── DiagProjectionPlot.cpp │ ├── io_utils.hpp │ ├── openPMD.cpp │ ├── openPMD.hpp │ ├── projection.cpp │ └── projection.hpp ├── linear_advection │ ├── AdvectionSimulation.cpp │ ├── AdvectionSimulation.hpp │ ├── linear_advection.cpp │ └── linear_advection.hpp ├── main.cpp ├── main.hpp ├── math │ ├── FastMath.hpp │ ├── Interpolate2D.cpp │ ├── Interpolate2D.hpp │ ├── ODEIntegrate.hpp │ ├── gauss.hpp │ ├── interpolate.hpp │ ├── math_impl.hpp │ ├── quadrature.hpp │ └── root_finding.hpp ├── particles │ ├── PhysicsParticles.hpp │ ├── particle_IO.hpp │ ├── particle_accretion.hpp │ ├── particle_creation.hpp │ ├── particle_deposition.hpp │ ├── particle_destruction.hpp │ ├── particle_radiation.hpp │ ├── particle_types.hpp │ ├── particle_update.hpp │ ├── particle_utils.hpp │ └── stellarpop_data.hpp ├── physics_info.hpp ├── physics_numVars.hpp ├── problems │ ├── Advection │ │ ├── CMakeLists.txt │ │ └── testAdvection.cpp │ ├── Advection2D │ │ ├── CMakeLists.txt │ │ └── testAdvection2D.cpp │ ├── AdvectionSemiellipse │ │ ├── CMakeLists.txt │ │ └── testAdvectionSemiellipse.cpp │ ├── AlfvenWaveCircular │ │ ├── CMakeLists.txt │ │ └── testAlfvenWaveCircular.cpp │ ├── AlfvenWaveLinear │ │ ├── CMakeLists.txt │ │ └── testAlfvenWaveLinear.cpp │ ├── BinaryOrbitCIC │ │ ├── CMakeLists.txt │ │ ├── particle_orbit_plot.py │ │ └── testBinaryOrbitCIC.cpp │ ├── BrioWuShockTube │ │ ├── CMakeLists.txt │ │ └── testBrioWuShockTube.cpp │ ├── CMakeLists.txt │ ├── Cooling │ │ ├── CMakeLists.txt │ │ └── testCooling.cpp │ ├── CurrentSheet │ │ ├── CMakeLists.txt │ │ └── testCurrentSheet.cpp │ ├── DiskGalaxy │ │ ├── CMakeLists.txt │ │ ├── ascent_actions.yaml │ │ ├── plot_disk.py │ │ ├── plot_faceon.py │ │ ├── plot_phase.py │ │ └── testDiskGalaxy.cpp │ ├── DustDamping │ │ ├── CMakeLists.txt │ │ └── testDustDamping.cpp │ ├── DustDrag │ │ ├── CMakeLists.txt │ │ └── testDustDrag.cpp │ ├── DustDrag3D │ │ ├── CMakeLists.txt │ │ └── testDustDrag3D.cpp │ ├── DustSoundwave │ │ ├── CMakeLists.txt │ │ └── testDustSoundwave.cpp │ ├── FCQuantities │ │ ├── CMakeLists.txt │ │ └── testFCQuantities.cpp │ ├── FastWave │ │ ├── CMakeLists.txt │ │ ├── testFastWave.cpp │ │ └── test_fast_wave.hpp │ ├── FieldLoop │ │ ├── CMakeLists.txt │ │ └── testFieldLoop.cpp │ ├── GravRadParticle3D │ │ ├── CMakeLists.txt │ │ └── testGravRadParticle3D.cpp │ ├── HydroBlast2D │ │ ├── CMakeLists.txt │ │ └── testHydroBlast2D.cpp │ ├── HydroBlast3D │ │ ├── CMakeLists.txt │ │ └── testHydroBlast3D.cpp │ ├── HydroContact │ │ ├── CMakeLists.txt │ │ └── testHydroContact.cpp │ ├── HydroHighMach │ │ ├── CMakeLists.txt │ │ └── testHydroHighMach.cpp │ ├── HydroKelvinHelmholz │ │ ├── CMakeLists.txt │ │ └── testHydroKelvinHelmholz.cpp │ ├── HydroLeblanc │ │ ├── CMakeLists.txt │ │ └── testHydroLeblanc.cpp │ ├── HydroQuirk │ │ ├── CMakeLists.txt │ │ └── testHydroQuirk.cpp │ ├── HydroRichtmeyerMeshkov │ │ ├── CMakeLists.txt │ │ └── testHydroRichtmeyerMeshkov.cpp │ ├── HydroSMS │ │ ├── CMakeLists.txt │ │ └── testHydroSMS.cpp │ ├── HydroShocktube │ │ ├── CMakeLists.txt │ │ └── testHydroShocktube.cpp │ ├── HydroShocktubeCMA │ │ ├── CMakeLists.txt │ │ └── testHydroShocktubeCMA.cpp │ ├── HydroShuOsher │ │ ├── CMakeLists.txt │ │ └── testHydroShuOsher.cpp │ ├── HydroVacuum │ │ ├── CMakeLists.txt │ │ └── testHydroVacuum.cpp │ ├── HydroWave │ │ ├── CMakeLists.txt │ │ └── testHydroWave.cpp │ ├── HydroWaveConvergence │ │ ├── CMakeLists.txt │ │ └── testHydroWaveConvergence.cpp │ ├── MHDBitwiseICs │ │ ├── CMakeLists.txt │ │ └── testMHDBitwiseICs.cpp │ ├── MHDBlast │ │ ├── CMakeLists.txt │ │ └── testMHDBlast.cpp │ ├── MHDQuirk │ │ ├── CMakeLists.txt │ │ └── testMHDQuirk.cpp │ ├── NscbcChannel │ │ ├── CMakeLists.txt │ │ ├── dQ_dx_inflow.ipynb │ │ ├── dQ_dx_outflow.ipynb │ │ └── testNscbcChannel.cpp │ ├── NscbcVortex │ │ ├── CMakeLists.txt │ │ └── testNscbcVortex.cpp │ ├── ODEIntegration │ │ ├── CMakeLists.txt │ │ └── testODEIntegration.cpp │ ├── OrszagTang │ │ ├── CMakeLists.txt │ │ └── testOrszagTang.cpp │ ├── ParticleAccretion │ │ ├── CMakeLists.txt │ │ └── testParticleAccretion.cpp │ ├── ParticleCreation │ │ ├── CMakeLists.txt │ │ └── testParticleCreation.cpp │ ├── ParticleRadiation │ │ ├── CMakeLists.txt │ │ └── testParticleRadiation.cpp │ ├── ParticleSF │ │ ├── CMakeLists.txt │ │ └── testParticleSF.cpp │ ├── ParticleSink │ │ ├── CMakeLists.txt │ │ └── testParticleSink.cpp │ ├── ParticleSinkFormation │ │ ├── CMakeLists.txt │ │ └── testParticleSinkFormation.cpp │ ├── PassiveScalar │ │ ├── CMakeLists.txt │ │ └── testPassiveScalar.cpp │ ├── PopIII │ │ ├── CMakeLists.txt │ │ ├── ascent_actions.yaml │ │ └── testPopIII.cpp │ ├── PrimordialChem │ │ ├── CMakeLists.txt │ │ └── testPrimordialChem.cpp │ ├── ProblemHelpers.cmake │ ├── RadBeam │ │ ├── CMakeLists.txt │ │ └── testRadBeam.cpp │ ├── RadDust │ │ ├── CMakeLists.txt │ │ └── testRadDust.cpp │ ├── RadDustMG │ │ ├── CMakeLists.txt │ │ └── testRadDustMG.cpp │ ├── RadForce │ │ ├── CMakeLists.txt │ │ └── testRadForce.cpp │ ├── RadLineCooling │ │ ├── CMakeLists.txt │ │ └── testRadLineCooling.cpp │ ├── RadLineCoolingMG │ │ ├── CMakeLists.txt │ │ └── testRadLineCoolingMG.cpp │ ├── RadMarshak │ │ ├── CMakeLists.txt │ │ └── testRadMarshak.cpp │ ├── RadMarshakAsymptotic │ │ ├── CMakeLists.txt │ │ └── testRadMarshakAsymptotic.cpp │ ├── RadMarshakCGS │ │ ├── CMakeLists.txt │ │ └── testRadMarshakCGS.cpp │ ├── RadMarshakDust │ │ ├── CMakeLists.txt │ │ └── testRadMarshakDust.cpp │ ├── RadMarshakDustPE │ │ ├── CMakeLists.txt │ │ └── testRadMarshakDustPE.cpp │ ├── RadMarshakVaytet │ │ ├── CMakeLists.txt │ │ └── testRadMarshakVaytet.cpp │ ├── RadMatterCoupling │ │ ├── CMakeLists.txt │ │ └── testRadMatterCoupling.cpp │ ├── RadMatterCouplingRSLA │ │ ├── CMakeLists.txt │ │ └── testRadMatterCouplingRSLA.cpp │ ├── RadShadow │ │ ├── CMakeLists.txt │ │ └── testRadShadow.cpp │ ├── RadStreaming │ │ ├── CMakeLists.txt │ │ └── testRadStreaming.cpp │ ├── RadStreamingY │ │ ├── CMakeLists.txt │ │ └── testRadStreamingY.cpp │ ├── RadSuOlson │ │ ├── CMakeLists.txt │ │ └── testRadSuOlson.cpp │ ├── RadTophat │ │ ├── CMakeLists.txt │ │ └── testRadTophat.cpp │ ├── RadTube │ │ ├── CMakeLists.txt │ │ └── testRadTube.cpp │ ├── RadhydroBB │ │ ├── CMakeLists.txt │ │ └── testRadhydroBB.cpp │ ├── RadhydroPulse │ │ ├── CMakeLists.txt │ │ └── testRadhydroPulse.cpp │ ├── RadhydroPulseDyn │ │ ├── CMakeLists.txt │ │ └── testRadhydroPulseDyn.cpp │ ├── RadhydroPulseGrey │ │ ├── CMakeLists.txt │ │ └── testRadhydroPulseGrey.cpp │ ├── RadhydroPulseMGconst │ │ ├── CMakeLists.txt │ │ └── testRadhydroPulseMGconst.cpp │ ├── RadhydroPulseMGint │ │ ├── CMakeLists.txt │ │ └── testRadhydroPulseMGint.cpp │ ├── RadhydroShell │ │ ├── CMakeLists.txt │ │ └── testRadhydroShell.cpp │ ├── RadhydroShock │ │ ├── CMakeLists.txt │ │ └── testRadhydroShock.cpp │ ├── RadhydroShockCGS │ │ ├── CMakeLists.txt │ │ └── testRadhydroShockCGS.cpp │ ├── RadhydroShockMultigroup │ │ ├── CMakeLists.txt │ │ └── testRadhydroShockMultigroup.cpp │ ├── RadhydroUniformAdvecting │ │ ├── CMakeLists.txt │ │ └── testRadhydroUniformAdvecting.cpp │ ├── RandomBlast │ │ ├── CMakeLists.txt │ │ └── testRandomBlast.cpp │ ├── RayleighTaylor2D │ │ ├── CMakeLists.txt │ │ └── testRayleighTaylor2D.cpp │ ├── RayleighTaylor3D │ │ ├── CMakeLists.txt │ │ ├── ascent_actions.yaml │ │ └── testRayleighTaylor3D.cpp │ ├── ResampledCoolingTest │ │ ├── CMakeLists.txt │ │ └── testResampledCoolingTest.cpp │ ├── SN │ │ ├── CMakeLists.txt │ │ ├── plot_curve.py │ │ └── testSN.cpp │ ├── ShockCloud │ │ ├── CMakeLists.txt │ │ ├── boundary_conditions.ipynb │ │ └── testShockCloud.cpp │ ├── SphericalCollapse │ │ ├── CMakeLists.txt │ │ └── testSphericalCollapse.cpp │ └── StarCluster │ │ ├── CMakeLists.txt │ │ ├── ascent_actions.yaml │ │ └── testStarCluster.cpp ├── radiation │ ├── planck_integral.hpp │ ├── radiation_dust_system.hpp │ ├── radiation_system.hpp │ ├── source_terms_multi_group.hpp │ └── source_terms_single_group.hpp ├── simulation.cpp ├── simulation.hpp ├── turbulence │ ├── TurbDataReader.cpp │ ├── TurbDataReader.hpp │ └── perturbation.py └── util │ ├── ArrayUtil.hpp │ ├── ArrayView.hpp │ ├── ArrayView_2d.hpp │ ├── 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