├── .Rbuildignore ├── .github ├── .gitignore ├── FUNDING.yml └── workflows │ ├── R-CMD-check.yaml │ ├── format-check.yaml │ └── pkgdown.yaml ├── .gitignore ├── .vscode ├── extensions.json └── settings.json ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── StatsandGeoms.R ├── adjustment_sets.R ├── as_tbl_graph.R ├── canonical.R ├── colliders.R ├── dag_labels.R ├── dagify.R ├── documentation_params.R ├── dplyr_methods.R ├── drelationship.R ├── equivalence.R ├── exogenous.R ├── geom_dag.R ├── ggdag-package.R ├── ggdag.R ├── implied_conditional_independence.R ├── instrumental.R ├── is_functions.R ├── layouts.R ├── paths.R ├── pull.R ├── query_functions.R ├── quick_plots.R ├── relations.R ├── saturate_and_prune.R ├── simulate_data.R ├── status.R ├── themes.R ├── tidy_dag.R ├── utils-pipe.R └── utils.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── air.toml ├── codecov.yml ├── ggdag.Rproj ├── inst └── WORDLIST ├── man ├── activate_collider_paths.Rd ├── adjustment_sets.Rd ├── aes_dag.Rd ├── as.data.frame.tidy_dagitty.Rd ├── as.tbl.tidy_dagitty.Rd ├── as_tbl_graph.Rd ├── as_tidy_dagitty.Rd ├── canonicalize.Rd ├── colliders.Rd ├── control_for.Rd ├── coordinates.Rd ├── d_relationship.Rd ├── dag.Rd ├── dag_params.Rd ├── dag_saturate.Rd ├── dagify.Rd ├── dot-validate_query_input.Rd ├── dplyr.Rd ├── draw_key_dag_collider.Rd ├── draw_key_dag_combined.Rd ├── draw_key_dag_edge.Rd ├── draw_key_dag_point.Rd ├── edge_backdoor.Rd ├── equivalent.Rd ├── exogenous.Rd ├── expand_plot.Rd ├── figures │ ├── ggdag-1.png │ ├── ggdag-2.png │ ├── ggdag_common-1.png │ ├── ggdag_common-2.png │ ├── ggdag_geoms-1.png │ └── logo.png ├── format.tidy_dagitty.Rd ├── fortify.Rd ├── geom_dag.Rd ├── geom_dag_collider_edges.Rd ├── geom_dag_edge_functions.Rd ├── geom_dag_edges.Rd ├── geom_dag_label.Rd ├── geom_dag_text.Rd ├── ggdag-package.Rd ├── ggdag.Rd ├── ggdag_classic.Rd ├── ggplot.tidy_dagitty.Rd ├── instrumental.Rd ├── is.tidy_dagitty.Rd ├── is_collider.Rd ├── is_confounder.Rd ├── is_dag_properties.Rd ├── is_node_properties.Rd ├── is_node_relationships.Rd ├── label.Rd ├── node_point.Rd ├── path_params.Rd ├── paths.Rd ├── pipe.Rd ├── print.tidy_dagitty.Rd ├── pull_dag.Rd ├── query_adjustment_sets.Rd ├── query_ancestors.Rd ├── query_children.Rd ├── query_colliders.Rd ├── query_conditional_independence.Rd ├── query_dconnected.Rd ├── query_descendants.Rd ├── query_dseparated.Rd ├── query_exogenous.Rd ├── query_functions.Rd ├── query_instrumental.Rd ├── query_markov_blanket.Rd ├── query_parents.Rd ├── query_paths.Rd ├── query_status.Rd ├── quick_plot.Rd ├── reexports.Rd ├── remove_axes.Rd ├── repel.Rd ├── scale_adjusted.Rd ├── simulate_data.Rd ├── status.Rd ├── tbl_df.tidy_dagitty.Rd ├── tbl_sum.tidy_dagitty.Rd ├── theme_dag_blank.Rd ├── theme_dag_grey.Rd ├── tidy_dagitty.Rd ├── time_ordered_coords.Rd └── variable_family.Rd ├── tests ├── figs │ ├── adjustment-sets │ │ └── ggdag-adjustment-set-renders.svg │ ├── deps.txt │ ├── ggdag-base │ │ ├── ggdag-classic-plots-basic-dag-classically.svg │ │ └── ggdag-plots-basic-dag.svg │ ├── ggdag-canonical │ │ └── ggdag-canonical-expands.svg │ ├── ggdag-collider │ │ └── ggdag-collider-highlights-m.svg │ ├── ggdag-drelationship │ │ ├── ggdag-dconnected-d-separates-x-and-y.svg │ │ ├── ggdag-drelationship-d-connects-x-and-y-no-collider-line.svg │ │ ├── ggdag-drelationship-d-connects-x-and-y.svg │ │ ├── ggdag-drelationship-d-separates-x-and-y.svg │ │ └── ggdag-dseparated-d-separates-x-and-y.svg │ ├── ggdag-equivalent-dags │ │ ├── ggdag-equivalent-class-plots-all-reversible-edges.svg │ │ ├── ggdag-equivalent-class-plots-labels.svg │ │ ├── ggdag-equivalent-class-plots-no-reversible-edges.svg │ │ ├── ggdag-equivalent-dags-plots-6-equivalent-dags.svg │ │ └── ggdag-equivalent-dags-plots-no-equivalent-dags.svg │ ├── ggdag-exogenous │ │ └── ggdag-exogenous-identifies-v-w1-w2-as-exogenous.svg │ ├── ggdag-instrumental │ │ └── ggdag-instrumental-identifies-i-and-i2-as-instrumental.svg │ ├── ggdag-paths │ │ ├── ggdag-paths-draws-2-open-paths.svg │ │ └── ggdag-paths-fan-draws-4-open-paths.svg │ ├── ggdag-status │ │ └── ggdag-status-x-as-exposure-y-as-outcome-and-l-as-latent.svg │ ├── ggrepel-extensions │ │ ├── geom-dag-edges-arc-is-arcy.svg │ │ ├── geom-dag-edges-diagonal-is-arcy.svg │ │ ├── geom-dag-edges-fan-is-fany.svg │ │ ├── geom-dag-edges-link-is-straight.svg │ │ ├── geom-dag-label-repel-repels-labels.svg │ │ └── geom-dag-text-repel-repels-names.svg │ ├── quick-plots │ │ ├── ggdag-butterfly-bias-is-a-butterfly.svg │ │ ├── ggdag-collider-triangle-is-triangle-too.svg │ │ ├── ggdag-confounder-triangle-is-triangle.svg │ │ └── ggdag-m-bias-is-an-m.svg │ ├── relations │ │ ├── ggdag-ancestors-identifies-v-w1-and-z1.svg │ │ ├── ggdag-children-identifies-y-x-and-z1.svg │ │ ├── ggdag-descendants-identifies-y-x-and-z1.svg │ │ └── ggdag-parents-identifies-z2-x-w1-and-w2.svg │ └── themes │ │ ├── theme-dag-gray-grid.svg │ │ ├── theme-dag-gray.svg │ │ ├── theme-dag-grid.svg │ │ └── theme-dag.svg ├── spelling.R ├── testthat.R └── testthat │ ├── _snaps │ ├── StatsandGeoms.md │ ├── adjustment-sets-additional.md │ ├── adjustment_sets.md │ ├── adjustment_sets │ │ ├── ggdag-adjustment-set-renders-with-low-width.svg │ │ ├── ggdag-adjustment-set-renders-without-shadows.svg │ │ └── ggdag-adjustment-set-renders.svg │ ├── canonical │ │ └── ggdag-canonical-expands.svg │ ├── colliders │ │ └── ggdag-collider-highlights-m.svg │ ├── dagify.md │ ├── dplyr_methods.md │ ├── drelationship-comprehensive.md │ ├── drelationship │ │ ├── ggdag-dconnected-d-separates-x-and-y.svg │ │ ├── ggdag-drelationship-d-connects-x-and-y.svg │ │ ├── ggdag-drelationship-d-connects-xy-no-collider.svg │ │ ├── ggdag-drelationship-d-separates-x-and-y.svg │ │ └── ggdag-dseparated-d-separates-x-and-y.svg │ ├── edge-cases-comprehensive.md │ ├── equivalence │ │ ├── ggdag-equivalent-class-plots-all-reversible-edges.svg │ │ ├── ggdag-equivalent-class-plots-labels.svg │ │ ├── ggdag-equivalent-class-plots-no-reversible-edges.svg │ │ ├── ggdag-equivalent-dags-plots-6-equivalent-dags.svg │ │ └── ggdag-equivalent-dags-plots-no-equivalent-dags.svg │ ├── exogenous │ │ └── ggdag-exogenous-identifies-v-w1-w2-as-exogenous.svg │ ├── geom_dag │ │ ├── circular-layout-with-arc-edges.svg │ │ ├── geom-dag-default-label-geom.svg │ │ ├── geom-dag-edges-arc-is-arcy.svg │ │ ├── geom-dag-edges-diagonal-is-arcy.svg │ │ ├── geom-dag-edges-fan-is-fany.svg │ │ ├── geom-dag-edges-link-is-straight.svg │ │ ├── geom-dag-label-labels.svg │ │ ├── geom-dag-label-repel-repels-labels.svg │ │ ├── geom-dag-label-repel2-repels-labels.svg │ │ ├── geom-dag-label-repel2.svg │ │ ├── geom-dag-static-labels.svg │ │ ├── geom-dag-text-repel-repels-names.svg │ │ ├── geom-dag-text-repel.svg │ │ ├── geom-dag-text-repel2-repels-names.svg │ │ ├── geom-dag-text-repel2.svg │ │ ├── label-repel2-custom-defaults.svg │ │ ├── repel-constrained-to-center.svg │ │ ├── repel-default-max-overlaps.svg │ │ ├── repel-default-min-segment-length.svg │ │ ├── repel-direction-x-only.svg │ │ ├── repel-direction-y-only.svg │ │ ├── repel-ignoring-data-points.svg │ │ ├── repel-infinite-max-overlaps.svg │ │ ├── repel-label-nudge-params.svg │ │ ├── repel-label-position-nudge.svg │ │ ├── repel-large-point-padding.svg │ │ ├── repel-longer-min-segment-length.svg │ │ ├── repel-max-overlaps-2.svg │ │ ├── repel-nudge-params.svg │ │ ├── repel-position-nudge.svg │ │ ├── repel-seed-1111.svg │ │ ├── repel-seed-9999-first.svg │ │ ├── repel-seed-9999-second.svg │ │ ├── repel-segment-alpha-0-3.svg │ │ ├── repel-segment-curvature-negative.svg │ │ ├── repel-segment-linetype-dashed.svg │ │ ├── repel-segment-parameters-combined.svg │ │ ├── repel-vector-nudges.svg │ │ ├── repel-zero-min-segment-length.svg │ │ └── text-repel2-custom-defaults.svg │ ├── geom_dag_comprehensive.md │ ├── ggdag │ │ ├── ggdag-classic-plots-basic-dag-classically.svg │ │ └── ggdag-plots-basic-dag.svg │ ├── implied_conditional_independence.md │ ├── implied_conditional_independence │ │ ├── fake-tests-flexibly-plot.svg │ │ ├── real-tests-plot.svg │ │ ├── sorted-plot-default.svg │ │ └── unsorted-plot.svg │ ├── instrumental │ │ ├── ggdag-instrumental-identifies-i-and-i2-as-instrumental.svg │ │ ├── ggdag-instrumental-identifies-nothing-as-instrumental.svg │ │ └── ggdag-instrumental-instrumental-plus-collider.svg │ ├── label_geom_visual │ │ ├── adjustment-set-default-labels.svg │ │ ├── adjustment-set-static-labels.svg │ │ ├── collider-default-labels.svg │ │ ├── collider-label-repel2.svg │ │ ├── collider-static-labels.svg │ │ ├── confounder-triangle-text-labels.svg │ │ ├── equivalent-dags-faceted-labels.svg │ │ ├── ggdag-custom-label-params.svg │ │ ├── ggdag-default-label-repel.svg │ │ ├── ggdag-static-labels.svg │ │ ├── ggdag-text-repel.svg │ │ ├── m-bias-static-labels.svg │ │ ├── paths-default-labels.svg │ │ ├── paths-text-repel.svg │ │ ├── status-default-labels.svg │ │ └── status-text-repel2.svg │ ├── layouts │ │ ├── df-time-ordered-coords.svg │ │ └── list-time-ordered-coords.svg │ ├── paths │ │ ├── ggdag-paths-draws-2-open-paths-without-shadows.svg │ │ ├── ggdag-paths-draws-2-open-paths.svg │ │ ├── ggdag-paths-fan-draws-4-open-paths-without-shadows.svg │ │ ├── ggdag-paths-fan-draws-4-open-paths.svg │ │ ├── ggdag-paths-with-no-open-paths-and-shadow.svg │ │ └── ggdag-paths-with-no-open-paths-no-shadow.svg │ ├── quick_plots │ │ ├── ggdag-butterfly-bias-is-a-butterfly.svg │ │ ├── ggdag-collider-triangle-is-triangle-too.svg │ │ ├── ggdag-confounder-triangle-is-triangle.svg │ │ ├── ggdag-m-bias-is-an-m.svg │ │ ├── ggdag-quartet-collider-shows-collider-structure.svg │ │ ├── ggdag-quartet-confounder-shows-confounder-structure.svg │ │ ├── ggdag-quartet-m-bias-shows-m-bias-structure.svg │ │ ├── ggdag-quartet-mediator-shows-mediator-structure.svg │ │ └── ggdag-quartet-time-collider-shows-time-varying-structure.svg │ ├── relations-comprehensive.md │ ├── relations │ │ ├── ggdag-ancestors-identifies-v-w1-and-z1.svg │ │ ├── ggdag-children-identifies-y-x-and-z1.svg │ │ ├── ggdag-descendants-identifies-y-x-and-z1.svg │ │ └── ggdag-parents-identifies-z2-x-w1-and-w2.svg │ ├── saturate_and_prune │ │ └── dag-saturate-returns-a-saturated-dag.svg │ ├── status │ │ └── ggdag-status-x-as-exposure-y-as-outcome-and-l-as-latent.svg │ ├── themes │ │ ├── theme-dag-gray-grid-with-facets.svg │ │ ├── theme-dag-gray-grid.svg │ │ ├── theme-dag-gray-with-facets.svg │ │ ├── theme-dag-gray.svg │ │ ├── theme-dag-grid-with-facets.svg │ │ ├── theme-dag-grid.svg │ │ ├── theme-dag-with-facets.svg │ │ └── theme-dag.svg │ ├── tidy-dag-methods.md │ ├── tidy_dag.md │ ├── tidy_dag │ │ └── list-creates-saturated-ordered-dag.svg │ └── utils-additional.md │ ├── helper-edge-analysis.R │ ├── helper-edge-counting.R │ ├── helper-load_dag.R │ ├── helper-snapshot.R │ ├── helper-vdiffr.R │ ├── test-StatsandGeoms.R │ ├── test-adjustment-sets-additional.R │ ├── test-adjustment_sets.R │ ├── test-as_tbl_graph.R │ ├── test-canonical.R │ ├── test-colliders.R │ ├── test-dag_labels.R │ ├── test-dagify.R │ ├── test-dplyr_methods.R │ ├── test-drelationship-comprehensive.R │ ├── test-drelationship.R │ ├── test-edge-cases-comprehensive.R │ ├── test-edge-counts-all-functions.R │ ├── test-equivalence.R │ ├── test-exogenous.R │ ├── test-geom_dag.R │ ├── test-geom_dag_comprehensive.R │ ├── test-ggdag-edge-counts-comprehensive.R │ ├── test-ggdag.R │ ├── test-helper-functions.R │ ├── test-implied_conditional_independence.R │ ├── test-instrumental.R │ ├── test-is_functions.R │ ├── test-label_geom_feature.R │ ├── test-label_geom_visual.R │ ├── test-layouts-comprehensive.R │ ├── test-layouts.R │ ├── test-paths.R │ ├── test-pull.R │ ├── test-query_functions.R │ ├── test-quick_plots-comprehensive.R │ ├── test-quick_plots.R │ ├── test-relations-comprehensive.R │ ├── test-relations.R │ ├── test-saturate_and_prune.R │ ├── test-simulate_data.R │ ├── test-status.R │ ├── 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