├── .Rbuildignore ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS ├── NEWS.md ├── R ├── RQGIS3.R ├── data.R ├── globals.R ├── helper_funs.R ├── init.R └── processing.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── appveyor.yml ├── cran-comments.md ├── data ├── comm.rda ├── dem.rda ├── ndvi.rda ├── random_points.rda └── study_area.rda ├── figures ├── 00_express.PNG ├── 01_initial_setup.PNG ├── 02_from_internet.PNG ├── 03_define_location.PNG ├── 04_select_packages.PNG ├── 05_command_line_utilties.PNG ├── 06_desktop_gis.PNG ├── 07_rest_default.PNG ├── 08_suggestions.PNG ├── 09_download.PNG ├── 10_plot_ger.png ├── README-unnamed-chunk-12-1.png ├── r_qgis_puzzle.png └── rewrite_algexecutor.PNG ├── inst ├── CITATION ├── python │ ├── python3_funs.py │ └── python_funs.py ├── test-scripts │ ├── 3_RQGIS3_testing.R │ ├── 3_cmd_python_setup.R │ ├── 3_exploring_rqgis_python3.py │ ├── 3_python3_reticulate_testing.R │ ├── 3_python_manual_processing.py │ ├── linux_map_canvas.py │ ├── linux_run_qgis.R │ ├── mac_run_qgis.R │ ├── python_manual_processing.py │ ├── reticulate.R │ └── saga_test.R └── travis │ └── gdal-abi.sh ├── known_issues.Rmd ├── man ├── RQGIS3-package.Rd ├── check_apps.Rd ├── check_for_server.Rd ├── comm.Rd ├── convert_ntf.Rd ├── dem.Rd ├── find_algorithms.Rd ├── get_args_man.Rd ├── get_extent.Rd ├── get_options.Rd ├── get_usage.Rd ├── ndvi.Rd ├── open_app.Rd ├── open_grass_help.Rd ├── open_help.Rd ├── pass_args.Rd ├── qgis_session_info.Rd ├── random_points.Rd ├── reset_path.Rd ├── run_ini.Rd ├── run_qgis.Rd ├── save_spatial_objects.Rd ├── set_env.Rd ├── setup_linux.Rd ├── setup_mac.Rd ├── setup_win.Rd └── study_area.Rd ├── revdep ├── README.md ├── check_revdep.R ├── checks.rds ├── problems.md └── timing.md ├── tests ├── testthat.R └── testthat │ ├── test-get-options.R │ ├── test-get-usage.R │ ├── test-paper-analysis.R │ ├── test-pass_args.R │ ├── test-qgis-prerun.R │ └── test-run-qgis.R ├── tic.R └── vignettes └── 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