├── .gitignore ├── .travis.yml ├── .travis_dependencies.sh ├── LICENSE ├── README.md ├── docs ├── Makefile ├── api.rst ├── conf.py ├── example.rst ├── index.rst └── requirements.txt ├── motif ├── __init__.py ├── contour_classifiers │ ├── __init__.py │ ├── mv_gaussian.py │ └── random_forest.py ├── contour_decoders │ ├── __init__.py │ ├── maximum.py │ └── viterbi.py ├── contour_extractors │ ├── __init__.py │ ├── deepsal.py │ ├── hll.py │ ├── peak_stream.py │ ├── resources │ │ ├── hll │ │ └── hll.c │ ├── salamon.py │ └── utils.py ├── core.py ├── feature_extractors │ ├── __init__.py │ ├── bitteli.py │ ├── cesium.py │ ├── melodia.py │ └── utils.py ├── plot.py ├── run.py ├── utils.py └── version.py ├── setup.py └── tests ├── __init__.py ├── contour_classifiers ├── __init__.py ├── test_mvgaussian.py └── test_randomforest.py ├── contour_decoders ├── __init__.py ├── test_maximum.py └── test_viterbi.py ├── contour_extractors ├── __init__.py ├── test_hll.py ├── test_peak_stream.py ├── test_salamon.py └── test_utils.py ├── data ├── input.wav ├── input_annotation.csv ├── seeds_hll.csv ├── short.wav ├── short_annotation.csv ├── short_contours_hll.csv ├── short_contours_salamon.csv └── test_annotation.csv ├── feature_extractors ├── __init__.py ├── test_bitteli.py ├── test_cesium.py ├── test_melodia.py └── test_utils.py ├── test_core.py ├── test_plot.py ├── test_run.py └── test_utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rabitt/motif/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rabitt/motif/HEAD/.travis.yml -------------------------------------------------------------------------------- /.travis_dependencies.sh: -------------------------------------------------------------------------------- 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