├── LICENSE ├── README.md ├── file_handling ├── clustal_to_fasta.py ├── clustal_to_tsv.py ├── compare_bed.py ├── extract_accession_no.py ├── extract_fasta_headers.py ├── extract_fasta_records.py ├── extract_seq.py ├── fasta2db_feed.py ├── fasta2fastq.py ├── fasta_concatenator.py ├── fasta_record_finder.py ├── fastq2fasta.py ├── file_comparison.py ├── ftp_download.py ├── gdc_download.py ├── multi_fasta_deconcatenator.py ├── mysqldb_find.py └── seq_concatenator.py ├── machine_learning ├── brca_classifier-1.py └── dna_classifier-1.py ├── sequence_analysis ├── PSSM.py ├── aa_comp.py ├── alignment2consensus.py ├── base_composition.py ├── consensus.py ├── gc_percent.py ├── hydrophobicity_plot.py ├── k-mer_constructor.py ├── kmer_constructor-1.py ├── orf_analyzer.py ├── prot_mol_weight_calculator.py ├── prototype_aligner1.py ├── random_seq_generator-1.py ├── random_seq_generator.py ├── temp_to_cod.py └── translate.py ├── supplementary_data └── images │ ├── dna_helix.png │ └── nt_seq_logo.png 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