├── .github └── workflows │ └── python-app.yml ├── .gitignore ├── LICENSE ├── README.md ├── conf ├── dataset │ ├── .yaml │ ├── CPSC.yaml │ ├── ChapmanShaoxing.yaml │ ├── Ga.yaml │ ├── Ningbo.yaml │ ├── aptos.yaml │ ├── cbis.yaml │ ├── chexpert.yaml │ ├── chexpert_full.yaml │ ├── ddi.yaml │ ├── ham10000.yaml │ ├── isic2019.yaml │ ├── isic2020.yaml │ ├── isruc.yaml │ ├── jinchi.yaml │ ├── lidc.yaml │ ├── lndb.yaml │ ├── messidor2.yaml │ ├── mimic-cxr.yaml │ ├── mros.yaml │ ├── pad_ufes_20.yaml │ ├── ptbxl.yaml │ ├── radfusion.yaml │ ├── rsna.yaml │ ├── shhs.yaml │ ├── vindr-cxr.yaml │ ├── vindr.yaml │ ├── vindrmulti.yaml │ └── xray8.yaml ├── model │ ├── imagenet-vit.yaml │ └── transformer.yaml ├── pretrain.yaml └── transfer.yaml ├── dataset-info.md ├── derm-tutorial.ipynb ├── ecg-tutorial.ipynb ├── img ├── benchmd_methods.png └── benchmd_results.png ├── preprocessing.py ├── pretrain.py ├── pyproject.toml ├── requirements.txt ├── src ├── __init__.py ├── datasets │ ├── catalog.py │ ├── chest_xray │ │ ├── chexpert.py │ │ ├── chexpert_full.py │ │ ├── ddi.py │ │ ├── mimic_cxr.py │ │ ├── vindr_cxr.py │ │ └── xray8.py │ ├── ct │ │ ├── base_ct.py │ │ ├── dicom_utils.py │ │ ├── lidc.py │ │ ├── lndb.py │ │ ├── lndb_utils.py │ │ ├── process_rsna.py │ │ ├── radfusion.py │ │ ├── readNoduleList.py │ │ └── rsna.py │ ├── derm │ │ ├── HAM10000.py │ │ ├── isic2019.py │ │ ├── isic2020.py │ │ └── pad_ufes_20.py │ ├── ecg │ │ ├── CPSC.py │ │ ├── CPSC_splits.csv │ │ ├── ChapmanShaoxing.py │ │ ├── ChapmanShaoxing_splits.csv │ │ ├── Ga.py │ │ ├── Ga_splits.csv │ │ ├── generate_labels.py │ │ ├── ptbxl.py │ │ └── ptbxl_splits.csv │ ├── eeg │ │ ├── isruc.py │ │ ├── preprocess │ │ │ ├── isruc.py │ │ │ └── shhs.py │ │ └── shhs.py │ ├── fundus │ │ ├── aptos.py │ │ ├── jinchi.py │ │ └── messidor2.py │ ├── mammo │ │ ├── cbis.py │ │ └── vindr.py │ └── specs.py ├── models │ ├── base_model.py │ ├── embedding_modules.py │ └── transformer.py ├── online_evaluator.py ├── systems │ ├── base_system.py │ 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