├── ALBEF ├── CODEOWNERS ├── CODE_OF_CONDUCT.md ├── CXR_ReDonE_dataset.py ├── CXR_ReDonE_module.py ├── CXR_ReDonE_pipeline.py ├── Grounding.py ├── LICENSE.txt ├── NLVR.py ├── Pretrain.py ├── Pretrain_nlvr.py ├── README.md ├── Retrieval.py ├── SECURITY.md ├── VE.py ├── VQA.py ├── cog.yaml ├── configs │ ├── Grounding.yaml │ ├── NLVR.yaml │ ├── NLVR_pretrain.yaml │ ├── Pretrain.yaml │ ├── Retrieval_coco.yaml │ ├── Retrieval_flickr.yaml │ ├── VE.yaml │ ├── VQA.yaml │ └── config_bert.json ├── dataset │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-39.pyc │ │ ├── caption_dataset.cpython-39.pyc │ │ ├── grounding_dataset.cpython-39.pyc │ │ ├── nlvr_dataset.cpython-39.pyc │ │ ├── randaugment.cpython-39.pyc │ │ ├── utils.cpython-39.pyc │ │ ├── ve_dataset.cpython-39.pyc │ │ └── vqa_dataset.cpython-39.pyc │ ├── caption_dataset.py │ ├── grounding_dataset.py │ ├── nlvr_dataset.py │ ├── randaugment.py │ ├── utils.py │ ├── ve_dataset.py │ └── vqa_dataset.py ├── examples │ ├── image0.jpg │ └── visualization.png ├── models │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-37.pyc │ │ ├── __init__.cpython-39.pyc │ │ ├── model_pretrain.cpython-39.pyc │ │ ├── model_retrieval.cpython-39.pyc │ │ ├── model_ve.cpython-37.pyc │ │ ├── model_ve.cpython-39.pyc │ │ ├── tokenization_bert.cpython-39.pyc │ │ ├── vit.cpython-37.pyc │ │ ├── vit.cpython-39.pyc │ │ ├── xbert.cpython-37.pyc │ │ └── xbert.cpython-39.pyc │ ├── model_nlvr.py │ ├── model_pretrain.py │ ├── model_pretrain_nlvr.py │ ├── model_retrieval.py │ ├── model_ve.py │ ├── model_vqa.py │ ├── tokenization_bert.py │ ├── vit.py │ └── xbert.py ├── optim │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-39.pyc │ │ ├── adafactor.cpython-39.pyc │ │ ├── adahessian.cpython-39.pyc │ │ ├── adamp.cpython-39.pyc │ │ ├── adamw.cpython-39.pyc │ │ ├── lookahead.cpython-39.pyc │ │ ├── nadam.cpython-39.pyc │ │ ├── novograd.cpython-39.pyc │ │ ├── nvnovograd.cpython-39.pyc │ │ ├── optim_factory.cpython-39.pyc │ │ ├── radam.cpython-39.pyc │ │ ├── rmsprop_tf.cpython-39.pyc │ │ └── sgdp.cpython-39.pyc │ ├── adafactor.py │ ├── adahessian.py │ ├── adamp.py │ ├── adamw.py │ ├── lookahead.py │ ├── nadam.py │ ├── novograd.py │ ├── nvnovograd.py │ ├── optim_factory.py │ ├── radam.py │ ├── rmsprop_tf.py │ └── sgdp.py ├── predict.py ├── pretrain_script.sh ├── refTools │ ├── __pycache__ │ │ ├── refer_python3.cpython-36.pyc │ │ └── refer_python3.cpython-38.pyc │ ├── evaluation │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-36.pyc │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── __init__.cpython-39.pyc │ │ │ ├── refEvaluation.cpython-36.pyc │ │ │ ├── refEvaluation.cpython-38.pyc │ │ │ └── refEvaluation.cpython-39.pyc │ │ ├── bleu │ │ │ ├── LICENSE │ │ │ ├── __init__.py │ │ │ ├── __init__.pyc │ │ │ ├── __pycache__ │ │ │ │ ├── __init__.cpython-36.pyc │ │ │ │ ├── __init__.cpython-38.pyc │ │ │ │ ├── __init__.cpython-39.pyc │ │ │ │ ├── bleu.cpython-36.pyc │ │ │ │ ├── bleu.cpython-38.pyc │ │ │ │ ├── bleu.cpython-39.pyc │ │ │ │ ├── bleu_scorer.cpython-36.pyc │ │ │ │ ├── bleu_scorer.cpython-38.pyc │ │ │ │ └── bleu_scorer.cpython-39.pyc │ │ │ ├── bleu.py │ │ │ ├── bleu.pyc │ │ │ ├── bleu_scorer.py │ │ │ └── bleu_scorer.pyc │ │ ├── cider │ │ │ ├── __init__.py │ │ │ ├── __init__.pyc │ │ │ ├── __pycache__ │ │ │ │ ├── __init__.cpython-36.pyc │ │ │ │ ├── __init__.cpython-38.pyc │ │ │ │ ├── __init__.cpython-39.pyc │ │ │ │ ├── cider.cpython-36.pyc │ │ │ │ ├── cider.cpython-38.pyc │ │ │ │ ├── cider.cpython-39.pyc │ │ │ │ ├── cider_scorer.cpython-36.pyc │ │ │ │ ├── cider_scorer.cpython-38.pyc │ │ │ │ └── cider_scorer.cpython-39.pyc │ │ │ ├── cider.py │ │ │ ├── cider.pyc │ │ │ ├── cider_scorer.py │ │ │ └── cider_scorer.pyc │ │ ├── meteor │ │ │ ├── __init__.py │ │ │ ├── __init__.pyc │ │ │ ├── __pycache__ │ │ │ │ ├── __init__.cpython-36.pyc │ │ │ │ ├── __init__.cpython-38.pyc │ │ │ │ ├── __init__.cpython-39.pyc │ │ │ │ ├── meteor.cpython-36.pyc │ │ │ │ ├── meteor.cpython-38.pyc │ │ │ │ └── meteor.cpython-39.pyc │ │ │ ├── meteor-1.5.jar │ │ │ ├── meteor.py │ │ │ └── meteor.pyc │ │ ├── readme.txt │ │ ├── refEvaluation.py │ │ ├── refEvaluation.pyc │ │ ├── rouge │ │ │ ├── __init__.py │ │ │ ├── __init__.pyc │ │ │ ├── __pycache__ │ │ │ │ ├── __init__.cpython-36.pyc │ │ │ │ ├── __init__.cpython-38.pyc │ │ │ │ ├── __init__.cpython-39.pyc │ │ │ │ ├── rouge.cpython-36.pyc │ │ │ │ ├── rouge.cpython-38.pyc │ │ │ │ └── rouge.cpython-39.pyc │ │ │ ├── rouge.py │ │ │ └── rouge.pyc │ │ └── tokenizer │ │ │ ├── __init__.py │ │ │ ├── __init__.pyc │ │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-36.pyc │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── __init__.cpython-39.pyc │ │ │ ├── ptbtokenizer.cpython-36.pyc │ │ │ ├── ptbtokenizer.cpython-38.pyc │ │ │ └── ptbtokenizer.cpython-39.pyc │ │ │ ├── ptbtokenizer.py │ │ │ ├── ptbtokenizer.pyc │ │ │ ├── stanford-corenlp-3.4.1.jar │ │ │ ├── tmp37tp6xj8 │ │ │ ├── tmp82iqkuu0 │ │ │ └── tmpn19wmqte │ └── refer_python3.py ├── scheduler │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-36.pyc │ │ ├── __init__.cpython-38.pyc │ │ ├── __init__.cpython-39.pyc │ │ ├── cosine_lr.cpython-36.pyc │ │ ├── cosine_lr.cpython-38.pyc │ │ ├── cosine_lr.cpython-39.pyc │ │ ├── plateau_lr.cpython-36.pyc │ │ ├── plateau_lr.cpython-38.pyc │ │ ├── plateau_lr.cpython-39.pyc │ │ ├── scheduler.cpython-36.pyc │ │ ├── scheduler.cpython-38.pyc │ │ ├── scheduler.cpython-39.pyc │ │ ├── scheduler_factory.cpython-36.pyc │ │ ├── scheduler_factory.cpython-38.pyc │ │ ├── scheduler_factory.cpython-39.pyc │ │ ├── step_lr.cpython-36.pyc │ │ ├── step_lr.cpython-38.pyc │ │ ├── step_lr.cpython-39.pyc │ │ ├── tanh_lr.cpython-36.pyc │ │ ├── tanh_lr.cpython-38.pyc │ │ └── tanh_lr.cpython-39.pyc │ ├── cosine_lr.py │ ├── plateau_lr.py │ ├── scheduler.py │ ├── scheduler_factory.py │ ├── step_lr.py │ └── tanh_lr.py ├── utils.py ├── ve_script.sh ├── visualization.ipynb └── vqaTools │ ├── __init__.py │ ├── __pycache__ │ ├── __init__.cpython-36.pyc │ ├── __init__.cpython-38.pyc │ ├── __init__.cpython-39.pyc │ ├── vqa.cpython-36.pyc │ ├── vqa.cpython-38.pyc │ ├── vqaEval.cpython-36.pyc │ ├── vqaEval.cpython-38.pyc │ └── vqaEval.cpython-39.pyc │ ├── vqa.py │ └── vqaEval.py ├── CXR-PRO └── README.md ├── CXR-Report-Metric_CXR_ReDonE_code ├── compute_avg_score.py └── prepare_df.py ├── FilBERT.ipynb ├── GILBERT.ipynb ├── LICENSE ├── README.md ├── environment.yml ├── ifcc_CXR_ReDonE_code ├── M2TransNLI.py └── m2trans_nli_filter.py ├── inference.sh └── remove_prior_refs.py /ALBEF/CODEOWNERS: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rajpurkarlab/CXR-ReDonE/HEAD/ALBEF/CODEOWNERS -------------------------------------------------------------------------------- /ALBEF/CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rajpurkarlab/CXR-ReDonE/HEAD/ALBEF/CODE_OF_CONDUCT.md 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