├── .gitignore ├── Makefile ├── README.md ├── data └── 12mer-kd │ ├── 10fold_idx │ ├── test_idx-1.txt │ ├── test_idx-10.txt │ ├── test_idx-2.txt │ ├── test_idx-3.txt │ ├── test_idx-4.txt │ ├── test_idx-5.txt │ ├── test_idx-6.txt │ ├── test_idx-7.txt │ ├── test_idx-8.txt │ ├── test_idx-9.txt │ ├── train_idx-1.txt │ ├── train_idx-10.txt │ ├── train_idx-2.txt │ ├── train_idx-3.txt │ ├── train_idx-4.txt │ ├── train_idx-5.txt │ ├── train_idx-6.txt │ ├── train_idx-7.txt │ ├── train_idx-8.txt │ └── train_idx-9.txt │ ├── 12mer-kd.txt │ ├── raw-12mer-kd.csv │ └── split_train_test.m ├── include ├── config.h ├── matrix │ ├── cuda_binary_kernel.cuh │ ├── cuda_helper.h │ ├── cuda_rand_kernel.cuh │ ├── cuda_unary_kernel.cuh │ ├── dense_matrix.h │ ├── fastWalshTransform_kernel_double.cuh │ ├── fastWalshTransform_kernel_float.cuh │ ├── fast_wht.h │ ├── gpuhandle.h │ ├── imatrix.h │ ├── mat_typedef.h │ ├── matrix_utils.h │ ├── mkl_helper.h │ ├── sp_data.h │ ├── sparse_matrix.h │ └── vector.h ├── net │ ├── abs_criterion_layer.h │ ├── avg_rank_criterion_layer.h │ ├── c_add_layer.h │ ├── c_mul_layer.h │ ├── classnll_criterion_layer.h │ ├── col_slice_layer.h │ ├── concat_layer.h │ ├── const_scalar_param.h │ ├── err_cnt_criterion_layer.h │ ├── exp_layer.h │ ├── gaussian_ll_layer.h │ ├── general_loss_criterion_layer.h │ ├── global_sum_layer.h │ ├── graph_pool_param.h │ ├── graph_struct.h │ ├── i_act_layer.h │ ├── i_criterion_layer.h │ ├── i_layer.h │ ├── i_param.h │ ├── inner_product_layer.h │ ├── input_layer.h │ ├── learner.h │ ├── linear_param.h │ ├── log_layer.h │ ├── loss_func.h │ ├── max_entropy_criterion_layer.h │ ├── mixture_nll_criterion_layer.h │ ├── model.h │ ├── mse_criterion_layer.h │ ├── msg_pass_param.h │ ├── multinomial_sample_layer.h │ ├── mvn_diag_nll_criterion_layer.h │ ├── nngraph.h │ ├── param_layer.h │ ├── relu_layer.h │ ├── repeat_layer.h │ ├── sigmoid_layer.h │ ├── softmax_layer.h │ ├── tanh_layer.h │ └── transpose_layer.h ├── nn_common.h └── utils.h ├── local_run.sh ├── make_common └── src ├── kernel_loopy_bp.cpp ├── kernel_mean_field.cpp ├── matrix ├── cpu_dense_matrix.cpp ├── cpu_sparse_mat.cpp ├── cpu_vector.cpp ├── fast_wht.cpp ├── fast_wht.cu ├── gpu_dense_matrix.cu ├── gpu_sparse_mat.cu ├── gpu_vector.cu └── gpuhandle.cu └── net ├── act_layer.cpp ├── act_layer.cu ├── concat_layer.cpp ├── gaussian_ll_layer.cpp ├── global_sum_layer.cpp ├── graph_pool_param.cpp ├── graph_pool_param.cu ├── learner.cpp ├── loss_func.cpp ├── loss_func.cu ├── max_entropy_criterion_layer.cpp ├── mixture_nll_criterion_layer.cpp ├── msg_pass_param.cpp ├── mvn_diag_nll_criterion_layer.cpp └── nngraph.cpp /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ramzan1990/sequence2vec/HEAD/.gitignore -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- 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